partial implementation
This commit is contained in:
parent
da7c66d29d
commit
034a0d65d6
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@ -17,7 +17,7 @@ import org.springframework.stereotype.Component;
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import org.springframework.web.client.RestTemplate;
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@Component
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public class CommunityClient {
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public class CommunityClient implements HasCache {
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private static final String ZENODO_COMMUNITY = "zenodo.org/communities/";
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@ -80,6 +80,7 @@ public class CommunityClient {
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return res;
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}
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@Override
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@CacheEvict(value = { "contexts" }, allEntries = true)
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public void clearCache() {}
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@ -17,7 +17,7 @@ import eu.dnetlib.app.directindex.errors.DirectIndexApiException;
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import eu.dnetlib.app.directindex.input.DatasourceEntry;
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@Component
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public class DatasourceManagerClient {
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public class DatasourceManagerClient implements HasCache {
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@Value("${dnet.directindex.dsm.url}")
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private String dsmApiUrl;
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@ -45,6 +45,7 @@ public class DatasourceManagerClient {
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}
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}
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@Override
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@CacheEvict(value = "datasources", allEntries = true)
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public void clearCache() {}
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@ -0,0 +1,6 @@
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package eu.dnetlib.app.directindex.clients;
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public interface HasCache {
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void clearCache();
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}
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@ -0,0 +1,310 @@
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package eu.dnetlib.app.directindex.clients;
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import java.io.Serializable;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.springframework.cache.annotation.CacheEvict;
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import org.springframework.cache.annotation.Cacheable;
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import org.springframework.stereotype.Component;
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@Component
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public class ProjectClient implements HasCache {
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private static final Log log = LogFactory.getLog(ProjectClient.class);
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@Cacheable("projects")
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public ProjectInfo resolveProjectLink(final String s) {
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// info:eu-repo/grantAgreement/EC/FP7/244909/EU/Making Capabilities Work/WorkAble
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final String[] arr = s.split("/");
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if (arr.length <= 4) { return null; }
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final ProjectInfo info = new ProjectInfo();
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final String acronym = arr.length > 7 ? arr[7] : "";
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final String title = arr.length > 6 ? StringUtils.isNotBlank(arr[6]) ? arr[6] : acronym : "";
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final String code = unescape(arr[4]);
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final String jurisdiction = arr.length > 5 ? arr[5] : "";
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final String funderShortName = fixFunderShortName(arr[2]);
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final String funderId = calculateFunderId(funderShortName, arr[3]);
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final String funderName = calculateFunderName(funderShortName);
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final String fundingId = calculateFundingId(funderId, arr[3]);
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final String fundingName = calculateFundingName(funderShortName, arr[3]);
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info.setId(calculateProjectId(funderShortName, fundingName, code));
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info.setAcronym(acronym);
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info.setTitle(title);
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info.setCode(code);
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info.setJurisdiction(jurisdiction);
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info.setFunderId(funderId);
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info.setFunderShortName(funderShortName);
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info.setFunderName(funderName);
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info.setFundingId(fundingId);
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info.setFundingName(fundingName);
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return info;
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}
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@Override
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@CacheEvict(value = "projects", allEntries = true)
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public void clearCache() {}
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private String calculateProjectId(final String funderShortName, final String funding, final String code) {
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return String.format("%s::%s", calculateFunderPrefix(funderShortName, funding), DigestUtils.md5Hex(code));
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}
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private String calculateFunderPrefix(final String funderShortName, final String funding) {
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switch (funderShortName.toLowerCase()) {
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case "chist-era":
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return "chistera____";
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case "conicyt":
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return "conicytf____";
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case "dfg":
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return "dfgf________";
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case "ec":
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switch (funding.toLowerCase()) {
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case "fp7":
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return "corda_______";
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case "h2020":
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return "corda__h2020";
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default:
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return "corda_____he";
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}
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case "eea":
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return "euenvagency_";
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case "hrzz":
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case "mzos":
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return "irb_hr______";
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case "tara":
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return "taraexp_____";
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case "tubitak":
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return "tubitakf____";
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case "rcuk":
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return "ukri________";
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default:
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String prefix = funderShortName.toLowerCase();
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// ensure we have 12 chars
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while (prefix.length() < 12) {
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prefix += "_";
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}
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return prefix + "";
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}
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}
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private String calculateFundingId(final String funderId, final String funding) {
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return StringUtils.isNoneBlank(funderId, funding) ? String.format("%s::%s", funderId, funding) : null;
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}
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private String calculateFundingName(final String funderShortName, final String fundingName) {
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switch (funderShortName) {
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case "EC":
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if (fundingName.toLowerCase().startsWith("horizon 2020")) { return "H2020"; }
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if (fundingName.toLowerCase().startsWith("horizon europe")) { return "HE"; }
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default:
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return fundingName;
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}
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}
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private String unescape(final String code) {
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return code.replace("%2F", "/");
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}
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protected String calculateFunderId(final String funderShortName, final String funding) {
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switch (funderShortName.toLowerCase()) {
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case "ec":
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return "ec__________::EC";
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default:
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final String fixedFunderShortName = fixFunderShortName(funderShortName);
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final String prefix = calculateFunderPrefix(fixedFunderShortName, funding);
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return prefix + fixedFunderShortName.toUpperCase();
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}
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}
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protected String calculateFunderName(final String funderShortName) {
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switch (funderShortName.toLowerCase()) {
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case "aff":
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case "aka":
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return "Academy of Finland";
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case "anr":
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return "French National Research Agency (ANR)";
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case "arc":
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return "Australian Research Council (ARC)";
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case "asap":
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return "Aligning Science Across Parkinson's";
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case "chist-era":
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return "CHIST-ERA";
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case "cihr":
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return "Canadian Institutes of Health Research";
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case "conicyt":
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return "Comisión Nacional de Investigación Científica y Tecnológica";
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case "dfg":
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return "Deutsche Forschungsgemeinschaft";
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case "ec":
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return "European Commission";
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case "eea":
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return "European Environment Agency";
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case "fct":
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return "Fundação para a Ciência e a Tecnologia, I.P.";
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case "fwf":
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return "Austrian Science Fund (FWF)";
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case "gsrt":
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return "General Secretariat of Research and Technology (GSRT)";
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case "hrzz":
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return "Croatian Science Foundation (CSF)";
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case "innoviris":
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return "INNOVIRIS";
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case "mestd":
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return "Ministry of Education, Science and Technological Development of Republic of Serbia";
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case "miur":
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return "Ministero dell'Istruzione dell'Università e della Ricerca";
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case "mzos":
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return "Ministry of Science, Education and Sports of the Republic of Croatia (MSES)";
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case "nhmrc":
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return "National Health and Medical Research Council (NHMRC)";
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case "nih":
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return "National Institutes of Health";
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case "nsf":
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return "National Science Foundation";
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case "nserc":
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return "Natural Sciences and Engineering Research Council of Canada";
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case "nwo":
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return "Netherlands Organisation for Scientific Research (NWO)";
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case "rcuk":
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case "ukri":
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return "UK Research and Innovation";
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case "rif":
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case "rpf":
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return "Research and Innovation Foundation";
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case "rsf":
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return "Russian Science Foundation";
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case "sfi":
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return "Science Foundation Ireland";
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case "sgov":
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return "Gobierno de España";
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case "snsf":
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return "Swiss National Science Foundation";
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case "sshrc":
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return "Social Sciences and Humanities Research Council";
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case "tara":
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return "Tara Expeditions Foundation";
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case "tubitak":
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return "Türkiye Bilimsel ve Teknolojik Araştırma Kurumu";
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case "wt":
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return "Wellcome Trust";
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default:
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log.error("Funder short name '" + funderShortName + "' not managed");
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return "";
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}
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}
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// TODO: remove me when Zenodo ingests the good UKRI projects
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private String fixFunderShortName(final String funderShortName) {
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return "RCUK".equals(funderShortName) ? "UKRI" : funderShortName;
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}
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public class ProjectInfo implements Serializable {
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private static final long serialVersionUID = 4433787349231982285L;
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private String id;
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private String acronym;
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private String title;
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private String code;
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private String jurisdiction;
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private String funderId;
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private String funderShortName;
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private String funderName;
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private String fundingId;
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private String fundingName;
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public String getId() {
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return id;
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}
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public void setId(final String id) {
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this.id = id;
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}
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public String getAcronym() {
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return acronym;
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}
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public void setAcronym(final String acronym) {
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this.acronym = acronym;
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}
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public String getTitle() {
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return title;
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}
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public void setTitle(final String title) {
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this.title = title;
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}
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public String getCode() {
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return code;
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}
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public void setCode(final String code) {
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this.code = code;
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}
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public String getJurisdiction() {
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return jurisdiction;
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}
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public void setJurisdiction(final String jurisdiction) {
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this.jurisdiction = jurisdiction;
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}
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public String getFunderId() {
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return funderId;
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}
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public void setFunderId(final String funderId) {
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this.funderId = funderId;
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}
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public String getFunderShortName() {
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return funderShortName;
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}
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public void setFunderShortName(final String funderShortName) {
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this.funderShortName = funderShortName;
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}
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public String getFunderName() {
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return funderName;
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}
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public void setFunderName(final String funderName) {
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this.funderName = funderName;
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}
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public String getFundingId() {
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return fundingId;
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}
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public void setFundingId(final String fundingId) {
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this.fundingId = fundingId;
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}
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public String getFundingName() {
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return fundingName;
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}
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public void setFundingName(final String fundingName) {
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this.fundingName = fundingName;
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}
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}
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}
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@ -18,7 +18,7 @@ import org.springframework.web.client.RestTemplate;
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import eu.dnetlib.app.directindex.errors.DirectIndexApiException;
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@Component
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public class VocabularyClient {
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public class VocabularyClient implements HasCache {
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private static final Log log = LogFactory.getLog(VocabularyClient.class);
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@ -53,6 +53,7 @@ public class VocabularyClient {
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}
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}
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@Override
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@CacheEvict(value = "vocabularies", allEntries = true)
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public void clearCache() {}
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@ -1,5 +1,7 @@
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package eu.dnetlib.app.directindex.controllers;
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import java.util.List;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.http.HttpStatus;
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import org.springframework.web.bind.annotation.GetMapping;
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@ -8,33 +10,23 @@ import org.springframework.web.bind.annotation.RequestMapping;
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import org.springframework.web.bind.annotation.ResponseStatus;
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import org.springframework.web.bind.annotation.RestController;
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import eu.dnetlib.app.directindex.clients.CommunityClient;
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import eu.dnetlib.app.directindex.clients.DatasourceManagerClient;
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import eu.dnetlib.app.directindex.clients.VocabularyClient;
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import eu.dnetlib.app.directindex.clients.HasCache;
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import eu.dnetlib.app.directindex.tasks.ScheduledActions;
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@RestController
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@RequestMapping("/api/admin")
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public class AdminController {
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@Autowired
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private VocabularyClient vocabularyClient;
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@Autowired
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private DatasourceManagerClient dsmClient;
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@Autowired
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private CommunityClient communityClient;
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@Autowired
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private ScheduledActions scheduledActions;
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@Autowired
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private List<HasCache> clients;
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@GetMapping("/evictCache")
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@ResponseStatus(HttpStatus.OK)
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public void evictCache() {
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vocabularyClient.clearCache();
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dsmClient.clearCache();
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communityClient.clearCache();
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clients.forEach(HasCache::clearCache);
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}
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@GetMapping("/scheduling/{enabled}")
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@ -2,7 +2,6 @@ package eu.dnetlib.app.directindex.mapping;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.Map.Entry;
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@ -18,6 +17,8 @@ import org.springframework.stereotype.Component;
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import eu.dnetlib.app.directindex.clients.CommunityClient;
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import eu.dnetlib.app.directindex.clients.CommunityClient.ContextInfo;
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import eu.dnetlib.app.directindex.clients.DatasourceManagerClient;
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import eu.dnetlib.app.directindex.clients.ProjectClient;
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import eu.dnetlib.app.directindex.clients.ProjectClient.ProjectInfo;
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import eu.dnetlib.app.directindex.clients.VocabularyClient;
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import eu.dnetlib.app.directindex.errors.DirectIndexApiException;
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import eu.dnetlib.app.directindex.input.DatasourceEntry;
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@ -58,6 +59,9 @@ public class SolrRecordMapper {
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@Autowired
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private CommunityClient communityClient;
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@Autowired
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private ProjectClient projectClient;
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private static final Log log = LogFactory.getLog(SolrRecordMapper.class);
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public SolrRecord toSolrRecord(final ResultEntry result) {
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@ -169,11 +173,40 @@ public class SolrRecordMapper {
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}
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}
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// TODO
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re.setContexts(null);
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final List<String> contexts = new ArrayList<String>();
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if (r.getContext() != null) {
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for (final Context ctx : r.getContext()) {
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if (ctx.getCategory() != null && ctx.getCategory().size() > 0) {
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for (final Category cat : ctx.getCategory()) {
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if (cat.getConcept() != null && cat.getConcept().size() > 0) {
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for (final Concept cpt : cat.getConcept()) {
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contexts.add(cpt.getId());
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}
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}
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}
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} else {
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contexts.add(ctx.getId());
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}
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}
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}
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re.setContexts(contexts);
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// TODO
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re.setLinksToProjects(null);
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// @formatter:off
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final List<String> projects = r.getLinks()
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.stream()
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.filter(l -> l.getHeader().getRelatedRecordType() == RecordType.project)
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.map(p -> String.format("info:eu-repo/grantAgreement/%s/%s/%s/%s/%s/%s",
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StringUtils.defaultIfBlank(p.getFunding().getFunder().getShortname(), ""),
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StringUtils.defaultIfBlank(p.getFunding().getLevel0().getName(), ""),
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StringUtils.defaultIfBlank(p.getCode(), ""),
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StringUtils.defaultIfBlank(p.getFunding().getFunder().getJurisdiction().getCode(), ""),
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StringUtils.defaultIfBlank(p.getProjectTitle(), ""),
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StringUtils.defaultIfBlank(p.getAcronym(), "")))
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.distinct()
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.collect(Collectors.toList());
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// @formatter:on
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re.setLinksToProjects(projects);
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return re;
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}
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@ -270,31 +303,14 @@ public class SolrRecordMapper {
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private RelatedRecord prepareDnetProjectLink(final String link) {
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final Map<String, String> info = new HashMap<>();
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final String[] arr = link.split("/");
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// info:eu-repo/grantAgreement/EC/FP7/244909/EU/Making Capabilities Work/WorkAble
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|
||||
if (arr.length > 4) {
|
||||
final String acronym = arr.length > 7 ? arr[7] : "";
|
||||
final String title = arr.length > 6 ? StringUtils.isNotBlank(arr[6]) ? arr[6] : acronym : "";
|
||||
final String code = unescape(arr[4]);
|
||||
final ProjectInfo info = projectClient.resolveProjectLink(link);
|
||||
|
||||
final String jurisdiction = arr.length > 5 ? arr[5] : "";
|
||||
final String funderId = calculateFunderId(arr[2], arr[3]);
|
||||
|
||||
final String funderShortName = fixFunderShortName(arr[2]);
|
||||
final String funderName = calculateFunderName(funderShortName);
|
||||
|
||||
final String fundingName = calculateFundingName(funderShortName, arr[3]);
|
||||
|
||||
final Funding funding = new Funding();
|
||||
|
||||
funding.setFunder(Funder.newInstance(funderId, funderShortName, funderName, Country
|
||||
.newInstance(jurisdiction, vocClient.findTermLabel("dnet:countries", jurisdiction)), null));
|
||||
funding.setLevel0(FundingLevel.newInstance(funderId, funderShortName, fundingName));
|
||||
if (info == null) { return null; }
|
||||
|
||||
final RelatedRecordHeader head = new RelatedRecordHeader();
|
||||
head.setRelatedIdentifier(calculateProjectId(arr[2], arr[3], arr[4]));
|
||||
head.setRelatedIdentifier(info.getId());
|
||||
head.setRelationType(ModelConstants.RESULT_PROJECT);
|
||||
head.setRelatedRecordType(RecordType.project);
|
||||
head.setRelationClass(ModelConstants.IS_PRODUCED_BY);
|
||||
|
|
@ -303,176 +319,33 @@ public class SolrRecordMapper {
|
|||
|
||||
final RelatedRecord rel = new RelatedRecord();
|
||||
rel.setHeader(head);
|
||||
rel.setProjectTitle(title);
|
||||
rel.setAcronym(acronym);
|
||||
rel.setCode(code);
|
||||
rel.setFunding(funding);
|
||||
rel.setProjectTitle(info.getTitle());
|
||||
rel.setAcronym(info.getAcronym());
|
||||
rel.setCode(info.getCode());
|
||||
|
||||
if (StringUtils.isNotBlank(arr[3])) {
|
||||
info.put("fundingId", funderId + "::" + fundingName);
|
||||
if (StringUtils.isNotBlank(info.getFunderId())) {
|
||||
final Funding funding = new Funding();
|
||||
|
||||
final Funder funder = new Funder();
|
||||
funder.setId(info.getFunderId());
|
||||
funder.setName(info.getFunderName());
|
||||
funder.setShortname(info.getFunderShortName());
|
||||
funder.setJurisdiction(Country.newInstance(info.getJurisdiction(), vocClient.findTermLabel("dnet:countries", info.getJurisdiction())));
|
||||
|
||||
funding.setFunder(funder);
|
||||
if (StringUtils.isNotBlank(info.getFundingId())) {
|
||||
final FundingLevel level = new FundingLevel();
|
||||
level.setId(info.getFundingId());
|
||||
level.setName(info.getFundingName());
|
||||
level.setDescription(info.getFundingName());
|
||||
funding.setLevel0(level);
|
||||
}
|
||||
|
||||
rel.setFunding(funding);
|
||||
}
|
||||
|
||||
return rel;
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private String calculateProjectId(final String funderShortName, final String funding, final String code) {
|
||||
final String suffix = DigestUtils.md5Hex(code);
|
||||
final String funderPrefix = calculateFunderPrefix(funderShortName, funding);
|
||||
return funderPrefix + suffix;
|
||||
}
|
||||
|
||||
private String calculateFunderPrefix(final String funderShortName, final String funding) {
|
||||
switch (funderShortName.toLowerCase()) {
|
||||
case "chist-era":
|
||||
return "chistera____::";
|
||||
case "conicyt":
|
||||
return "conicytf____::";
|
||||
case "dfg":
|
||||
return "dfgf________::";
|
||||
case "ec":
|
||||
switch (funding.toLowerCase()) {
|
||||
case "fp7":
|
||||
return "corda_______::";
|
||||
case "h2020":
|
||||
return "corda__h2020::";
|
||||
default:
|
||||
return "corda_____he::";
|
||||
}
|
||||
case "eea":
|
||||
return "euenvagency_::";
|
||||
case "hrzz":
|
||||
case "mzos":
|
||||
return "irb_hr______::";
|
||||
case "tara":
|
||||
return "taraexp_____::";
|
||||
case "tubitak":
|
||||
return "tubitakf____::";
|
||||
case "rcuk":
|
||||
return "ukri________::";
|
||||
default:
|
||||
String prefix = funderShortName.toLowerCase();
|
||||
// ensure we have 12 chars
|
||||
while (prefix.length() < 12) {
|
||||
prefix += "_";
|
||||
}
|
||||
return prefix + "::";
|
||||
}
|
||||
}
|
||||
|
||||
private String calculateFundingName(final String funderShortName, final String fundingName) {
|
||||
switch (funderShortName) {
|
||||
case "EC":
|
||||
if (fundingName.toLowerCase().startsWith("horizon 2020")) { return "H2020"; }
|
||||
if (fundingName.toLowerCase().startsWith("horizon europe")) { return "HE"; }
|
||||
default:
|
||||
return fundingName;
|
||||
}
|
||||
}
|
||||
|
||||
private String unescape(final String code) {
|
||||
return code.replace("%2F", "/");
|
||||
}
|
||||
|
||||
protected String calculateFunderId(final String funderShortName, final String funding) {
|
||||
switch (funderShortName.toLowerCase()) {
|
||||
case "ec":
|
||||
return "ec__________::EC";
|
||||
default:
|
||||
final String fixedFunderShortName = fixFunderShortName(funderShortName);
|
||||
final String prefix = calculateFunderPrefix(fixedFunderShortName, funding);
|
||||
return prefix + fixedFunderShortName.toUpperCase();
|
||||
}
|
||||
}
|
||||
|
||||
protected String calculateFunderName(final String funderShortName) {
|
||||
|
||||
switch (funderShortName.toLowerCase()) {
|
||||
case "aff":
|
||||
case "aka":
|
||||
return "Academy of Finland";
|
||||
case "anr":
|
||||
return "French National Research Agency (ANR)";
|
||||
case "arc":
|
||||
return "Australian Research Council (ARC)";
|
||||
case "asap":
|
||||
return "Aligning Science Across Parkinson's";
|
||||
case "chist-era":
|
||||
return "CHIST-ERA";
|
||||
case "cihr":
|
||||
return "Canadian Institutes of Health Research";
|
||||
case "conicyt":
|
||||
return "Comisión Nacional de Investigación Científica y Tecnológica";
|
||||
case "dfg":
|
||||
return "Deutsche Forschungsgemeinschaft";
|
||||
case "ec":
|
||||
return "European Commission";
|
||||
case "eea":
|
||||
return "European Environment Agency";
|
||||
case "fct":
|
||||
return "Fundação para a Ciência e a Tecnologia, I.P.";
|
||||
case "fwf":
|
||||
return "Austrian Science Fund (FWF)";
|
||||
case "gsrt":
|
||||
return "General Secretariat of Research and Technology (GSRT)";
|
||||
case "hrzz":
|
||||
return "Croatian Science Foundation (CSF)";
|
||||
case "innoviris":
|
||||
return "INNOVIRIS";
|
||||
case "mestd":
|
||||
return "Ministry of Education, Science and Technological Development of Republic of Serbia";
|
||||
case "miur":
|
||||
return "Ministero dell'Istruzione dell'Università e della Ricerca";
|
||||
case "mzos":
|
||||
return "Ministry of Science, Education and Sports of the Republic of Croatia (MSES)";
|
||||
case "nhmrc":
|
||||
return "National Health and Medical Research Council (NHMRC)";
|
||||
case "nih":
|
||||
return "National Institutes of Health";
|
||||
case "nsf":
|
||||
return "National Science Foundation";
|
||||
case "nserc":
|
||||
return "Natural Sciences and Engineering Research Council of Canada";
|
||||
case "nwo":
|
||||
return "Netherlands Organisation for Scientific Research (NWO)";
|
||||
case "rcuk":
|
||||
case "ukri":
|
||||
return "UK Research and Innovation";
|
||||
case "rif":
|
||||
case "rpf":
|
||||
return "Research and Innovation Foundation";
|
||||
case "rsf":
|
||||
return "Russian Science Foundation";
|
||||
case "sfi":
|
||||
return "Science Foundation Ireland";
|
||||
case "sgov":
|
||||
return "Gobierno de España";
|
||||
case "snsf":
|
||||
return "Swiss National Science Foundation";
|
||||
case "sshrc":
|
||||
return "Social Sciences and Humanities Research Council";
|
||||
case "tara":
|
||||
return "Tara Expeditions Foundation";
|
||||
case "tubitak":
|
||||
return "Türkiye Bilimsel ve Teknolojik Araştırma Kurumu";
|
||||
case "wt":
|
||||
return "Wellcome Trust";
|
||||
default:
|
||||
log.error("Funder short name '" + funderShortName + "' not managed");
|
||||
return "";
|
||||
}
|
||||
}
|
||||
|
||||
// TODO: remove me when Zenodo ingests the good UKRI projects
|
||||
private String fixFunderShortName(final String funderShortName) {
|
||||
switch (funderShortName) {
|
||||
case "RCUK":
|
||||
return "UKRI";
|
||||
default:
|
||||
return funderShortName;
|
||||
}
|
||||
}
|
||||
|
||||
private Pid prepareDnetPid(final PidEntry pe) {
|
||||
final Pid p = new Pid();
|
||||
|
|
|
|||
Loading…
Reference in New Issue