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code cleaning and implementation of the TreeDedup + minor changes

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miconis 2019-11-14 10:01:21 +01:00
parent 5b3adb3e65
commit 676e9c8e37
9 changed files with 235 additions and 31 deletions
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119
dnet-dedup-test/dependency-reduced-pom.xml Normal file
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@ -0,0 +1,119 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<parent>
<artifactId>dnet-dedup</artifactId>
<groupId>eu.dnetlib</groupId>
<version>4.0.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>dnet-dedup-test</artifactId>
<build>
<plugins>
<plugin>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<filters>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/*.SF</exclude>
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
</excludes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.7</version>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.8</source>
<target>1.8</target>
<includes>
<include>**/*.java</include>
</includes>
</configuration>
</plugin>
<plugin>
<groupId>net.alchim31.maven</groupId>
<artifactId>scala-maven-plugin</artifactId>
<version>4.0.1</version>
<executions>
<execution>
<id>scala-compile-first</id>
<phase>initialize</phase>
<goals>
<goal>add-source</goal>
<goal>compile</goal>
</goals>
</execution>
<execution>
<id>scala-test-compile</id>
<phase>process-test-resources</phase>
<goals>
<goal>testCompile</goal>
</goals>
</execution>
</executions>
<configuration>
<scalaVersion>${scala.version}</scalaVersion>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.9</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>hamcrest-core</artifactId>
<groupId>org.hamcrest</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.oozie</groupId>
<artifactId>oozie-client</artifactId>
<version>5.1.0</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>json-simple</artifactId>
<groupId>com.googlecode.json-simple</groupId>
</exclusion>
<exclusion>
<artifactId>jms</artifactId>
<groupId>javax.jms</groupId>
</exclusion>
<exclusion>
<artifactId>slf4j-simple</artifactId>
<groupId>org.slf4j</groupId>
</exclusion>
<exclusion>
<artifactId>oozie-fluent-job-api</artifactId>
<groupId>org.apache.oozie</groupId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
</project>

2
dnet-dedup-test/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-dedup</artifactId>
<version>3.0.15-SNAPSHOT</version>
<version>4.0.0-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

4
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/organization.current.conf
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@ -1,6 +1,6 @@
{
"wf" : {
"threshold" : "0.9",
"threshold" : "0.99",
"dedupRun" : "001",
"entityType" : "organization",
"orderField" : "legalname",
@ -58,7 +58,7 @@
"positive": "layer3",
"negative": "NO_MATCH",
"undefined": "layer3",
"ignoreUndefined": "false"
"ignoreUndefined": "true"
},
"layer3": {
"fields": [

6
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/organization.strict.conf
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@ -58,7 +58,7 @@
"positive": "layer3",
"negative": "NO_MATCH",
"undefined": "layer3",
"ignoreUndefined": "false"
"ignoreUndefined": "true"
},
"layer3": {
"fields": [
@ -69,7 +69,7 @@
"countIfUndefined": "true",
"params": {
"windowSize": 4,
"threshold": 0.7
"threshold": 0.9
}
},
{
@ -80,7 +80,7 @@
"params": {}
}
],
"threshold": 0.9,
"threshold": 0.99,
"aggregation": "W_MEAN",
"positive": "MATCH",
"negative": "NO_MATCH",

91
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/examples/organization.to.fix.json
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@ -1,8 +1,4 @@
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2
dnet-pace-core/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-dedup</artifactId>
<version>3.0.15-SNAPSHOT</version>
<version>4.0.0-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

3
dnet-pace-core/src/main/java/eu/dnetlib/pace/config/WfConfig.java
View File

@ -256,9 +256,8 @@ public class WfConfig implements Serializable {
return maxIterations;
}
public WfConfig setMaxIterations(int maxIterations) {
public void setMaxIterations(int maxIterations) {
this.maxIterations = maxIterations;
return this;
}
/*

37
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/TreeProcessor.java
View File

@ -24,16 +24,16 @@ public class TreeProcessor {
public boolean compare(final MapDocument a, final MapDocument b) {
//evaluate the decision tree
return evaluateTree(a, b, config.decisionTree()) == MatchType.MATCH;
return evaluateTree(a, b) == MatchType.MATCH;
}
public MatchType evaluateTree(final MapDocument doc1, final MapDocument doc2, final Map<String, TreeNodeDef> decisionTree){
public MatchType evaluateTree(final MapDocument doc1, final MapDocument doc2){
String current = "start";
while (MatchType.parse(current)==MatchType.UNDEFINED) {
TreeNodeDef currentNode = decisionTree.get(current);
TreeNodeDef currentNode = config.decisionTree().get(current);
//throw an exception if the node doesn't exist
if (currentNode == null)
throw new PaceException("The Tree Node doesn't exist: " + current);
@ -57,4 +57,35 @@ public class TreeProcessor {
return MatchType.parse(current);
}
public double computeScore(final MapDocument doc1, final MapDocument doc2) {
String current = "start";
double score = 0.0;
while (MatchType.parse(current)==MatchType.UNDEFINED) {
TreeNodeDef currentNode = config.decisionTree().get(current);
//throw an exception if the node doesn't exist
if (currentNode == null)
throw new PaceException("The Tree Node doesn't exist: " + current);
TreeNodeStats stats = currentNode.evaluate(doc1, doc2, config);
score = stats.getFinalScore(currentNode.getAggregation());
//if ignoreUndefined=false the miss is considered as undefined
if (!currentNode.isIgnoreUndefined() && stats.getUndefinedCount()>0) {
current = currentNode.getUndefined();
}
//if ignoreUndefined=true the miss is ignored and the score computed anyway
else if (stats.getFinalScore(currentNode.getAggregation()) >= currentNode.getThreshold()) {
current = currentNode.getPositive();
}
else {
current = currentNode.getNegative();
}
}
return score;
}
}

2
pom.xml
View File

@ -5,7 +5,7 @@
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-dedup</artifactId>
<version>3.0.15-SNAPSHOT</version>
<version>4.0.0-SNAPSHOT</version>
<packaging>pom</packaging>