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implementation of new comparators for publication dedup configuration update

This commit is contained in:
miconis 2021-12-27 17:35:02 +01:00
parent 451114418d
commit 5e8757a457
17 changed files with 2120 additions and 51 deletions
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10
dnet-dedup-test/job-override.properties
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@ -1,6 +1,6 @@
#entitiesPath = /tmp/prod_provision/graph/01_graph_raw/publication
entitiesPath = /tmp/publications_test_dump
workingPath = /user/michele.debonis/erf_test/workingdirtree
dedupConfPath = /user/michele.debonis/erf_test/pubs.tree.conf.json
numPartitions = 20
useTree = false
#entitiesPath = /tmp/prod_provision/graph/02_graph_cleaned/publication
workingPath = /user/michele.debonis/new_dedup_test/workingdirtree
dedupConfPath = /user/michele.debonis/new_dedup_test/pubs.tree.conf.json
numPartitions = 8000
useTree = true

1
dnet-dedup-test/src/main/java/eu/dnetlib/jobs/SparkCreateSimRels.java
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@ -72,6 +72,7 @@ public class SparkCreateSimRels extends AbstractSparkJob {
JavaPairRDD<String, MapDocument> mapDocuments = sc
.textFile(entitiesPath)
.repartition(numPartitions)
.mapToPair(
(PairFunction<String, String, MapDocument>) s -> {
MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConfig, s);

22
dnet-dedup-test/src/test/java/eu/dnetlib/pace/DedupLocalTest.java
View File

@ -178,9 +178,9 @@ public class DedupLocalTest extends DedupTestUtils {
public void deduplicationTest() throws IOException {
//custom parameters for this test
DedupConfig dedupConfig = DedupConfig.load(readFileFromHDFS("/Users/miconis/IdeaProjects/DnetDedup/dnet-dedup/dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/ds.tree.conf.json"));
String inputPath = "/Users/miconis/Desktop/Fairsharing dedup/datasources";
String workingPath = "/tmp/fairsharing_working_dir";
DedupConfig dedupConfig = DedupConfig.load(readFileFromHDFS("/Users/miconis/IdeaProjects/DnetDedup/dnet-dedup/dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/pub.instancetype.tree.conf.json"));
String inputPath = "/Users/miconis/Desktop/FDup paper/publications_dump_10Mi";
String workingPath = "/tmp/dedup_working_dir";
String simRelsPath = workingPath + "/simrels";
String mergeRelsPath = workingPath + "/mergerels";
String outputPath = workingPath + "/dedup";
@ -228,7 +228,7 @@ public class DedupLocalTest extends DedupTestUtils {
System.out.println("Total time for mergerels creation : " + mergerels_time);
System.out.println("Total time for dedupentity creation : " + dedupentity_time);
cleanup();
FileUtils.deleteDirectory(new File(workingPath));
}
@Test //test the match between two JSON
@ -333,6 +333,20 @@ public class DedupLocalTest extends DedupTestUtils {
return minDegree;
}
@Test
@Ignore
public void asMapDocument() throws IOException {
final String json = "{\"context\": [], \"dataInfo\": {\"invisible\": false, \"trust\": \"0.9\", \"provenanceaction\": {\"classid\": \"sysimport:actionset\", \"classname\": \"sysimport:actionset\", \"schemeid\": \"dnet:provenanceActions\", \"schemename\": \"dnet:provenanceActions\"}, \"inferred\": false, \"deletedbyinference\": false}, \"resourcetype\": {\"classid\": \"0013\", \"classname\": \"0013\", \"schemeid\": \"dnet:dataCite_resource\", \"schemename\": \"dnet:dataCite_resource\"}, \"pid\": [{\"qualifier\": {\"classid\": \"doi\", \"classname\": \"doi\", \"schemeid\": \"dnet:pid_types\", \"schemename\": \"dnet:pid_types\"}, \"value\": \"10.1016/b978-0-323-54696-6.00057-4\"}], \"contributor\": [], \"bestaccessright\": {\"classid\": \"RESTRICTED\", \"classname\": \"Restricted\", \"schemeid\": \"dnet:access_modes\", \"schemename\": \"dnet:access_modes\"}, \"relevantdate\": [{\"qualifier\": {\"classid\": \"created\", \"classname\": \"created\", \"schemeid\": \"dnet:dataCite_date\", \"schemename\": \"dnet:dataCite_date\"}, \"value\": \"2018-11-30T10:52:46Z\"}], \"collectedfrom\": [{\"key\": \"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2\", \"value\": \"Crossref\"}], \"id\": \"50|doiboost____::0a5280c186efacdc7c8ce845cec3fceb\", \"subject\": [], \"lastupdatetimestamp\": 1585062372132, \"author\": [{\"fullname\": \"Eric Caumes\", \"surname\": \"Caumes\", \"name\": \"Eric\", \"rank\": 1}], \"instance\": [{\"hostedby\": {\"key\": \"10|openaire____::55045bd2a65019fd8e6741a755395c8c\", \"value\": \"Unknown Repository\"}, \"license\": {\"value\": \"https://www.elsevier.com/tdm/userlicense/1.0/\"}, \"url\": [\"https://api.elsevier.com/content/article/PII:B9780323546966000574?httpAccept=text/xml\", \"https://api.elsevier.com/content/article/PII:B9780323546966000574?httpAccept=text/plain\", \"http://dx.doi.org/10.1016/b978-0-323-54696-6.00057-4\"], \"dateofacceptance\": {\"value\": \"2018-11-30T10:52:46Z\"}, \"collectedfrom\": {\"key\": \"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2\", \"value\": \"Crossref\"}, \"accessright\": {\"classid\": \"RESTRICTED\", \"classname\": \"Restricted\", \"schemeid\": \"dnet:access_modes\", \"schemename\": \"dnet:access_modes\"}, \"instancetype\": {\"classid\": \"0013\", \"classname\": \"Part of book or chapter of book\", \"schemeid\": \"dnet:publication_resource\", \"schemename\": \"dnet:publication_resource\"}}], \"dateofcollection\": \"2020-03-24T15:06:12Z\", \"fulltext\": [], \"description\": [], \"format\": [], \"measures\": [], \"coverage\": [], \"externalReference\": [], \"publisher\": {\"value\": \"Elsevier\"}, \"resulttype\": {\"classid\": \"publication\", \"classname\": \"publication\", \"schemeid\": \"dnet:result_typologies\", \"schemename\": \"dnet:result_typologies\"}, \"country\": [], \"extraInfo\": [], \"originalId\": [\"10.1016/b978-0-323-54696-6.00057-4\"], \"source\": [{\"value\": \"Crossref\"}, {\"value\": \"Travel Medicine ISBN: 9780323546966\"}], \"dateofacceptance\": {\"value\": \"2018-11-30T10:52:46Z\"}, \"title\": [{\"qualifier\": {\"classid\": \"main title\", \"classname\": \"main title\", \"schemeid\": \"dnet:dataCite_title\", \"schemename\": \"dnet:dataCite_title\"}, \"value\": \"Skin Diseases\"}]}\n";
DedupConfig dedupConf = DedupConfig.load(readFileFromHDFS("/Users/miconis/IdeaProjects/DnetDedup/dnet-dedup/dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/pub.instancetype.tree.conf.json"));
final MapDocument mapDocument = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, json);
for(String field: mapDocument.getFieldMap().keySet()) {
System.out.println(field + ": " + mapDocument.getFieldMap().get(field).stringValue());
}
}
}
// function mocking the tree processor by considering every comparison instead of using early exits

442
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/pub.instancetype.tree.conf.json Normal file
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@ -0,0 +1,442 @@
{
"wf": {
"threshold": "0.99",
"dedupRun": "001",
"entityType": "result",
"subEntityType": "resulttype",
"subEntityValue": "publication",
"orderField": "title",
"queueMaxSize": "200",
"groupMaxSize": "100",
"maxChildren": "100",
"slidingWindowSize": "50",
"rootBuilder": [
"result",
"resultProject_outcome_isProducedBy",
"resultResult_publicationDataset_isRelatedTo",
"resultResult_similarity_isAmongTopNSimilarDocuments",
"resultResult_similarity_hasAmongTopNSimilarDocuments",
"resultOrganization_affiliation_isAffiliatedWith",
"resultResult_part_hasPart",
"resultResult_part_isPartOf",
"resultResult_supplement_isSupplementTo",
"resultResult_supplement_isSupplementedBy",
"resultResult_version_isVersionOf"
],
"includeChildren": "true",
"maxIterations": 20,
"idPath": "$.id"
},
"pace": {
"clustering": [
{
"name": "wordsStatsSuffixPrefixChain",
"fields": [
"title"
],
"params": {
"mod": "10"
}
},
{
"name": "lowercase",
"fields": [
"doi",
"altdoi"
],
"params": {
"collapseOn:pid": "0"
}
}
],
"decisionTree": {
"start": {
"fields": [
{
"field": "instance",
"comparator": "instanceTypeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer1",
"negative": "NO_MATCH",
"undefined": "layer1",
"ignoreUndefined": "true"
},
"layer1": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid"
}
},
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"crossCompare": "alternateid"
}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer2",
"negative": "layer3",
"undefined": "layer3",
"ignoreUndefined": "true"
},
"layer2": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"layer3": {
"fields": [
{
"field": "title",
"comparator": "titleVersionMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
},
{
"field": "authors",
"comparator": "sizeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1.0,
"aggregation": "AND",
"positive": "layer4",
"negative": "NO_MATCH",
"undefined": "layer4",
"ignoreUndefined": "false"
},
"layer4": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.99,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
}
},
"model": [
{
"name": "doi",
"type": "String",
"path": "$.instance[*].pid[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "altdoi",
"type": "String",
"path": "$.instance[*].alternateIdentifier[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "pid",
"type": "JSON",
"path": "$.instance[*].pid[*]",
"overrideMatch": "true"
},
{
"name": "alternateid",
"type": "JSON",
"path": "$.instance[*].alternateIdentifier[*]",
"overrideMatch": "true"
},
{
"name": "title",
"type": "String",
"path": "$.title[?(@.qualifier.classid == 'main title')].value",
"length": 250,
"size": 5
},
{
"name": "authors",
"type": "List",
"path": "$.author[*].fullname",
"size": 200
},
{
"name": "resulttype",
"type": "String",
"path": "$.resulttype.classid"
},
{
"name": "instance",
"type": "List",
"path": "$.instance[*].instancetype.classname"
}
],
"blacklists": {
"title": [
"(?i)^Data Management Plan",
"^Inside Front Cover$",
"(?i)^Poster presentations$",
"^THE ASSOCIATION AND THE GENERAL MEDICAL COUNCIL$",
"^Problems with perinatal pathology\\.?$",
"(?i)^Cases? of Puerperal Convulsions$",
"(?i)^Operative Gyna?ecology$",
"(?i)^Mind the gap\\!?\\:?$",
"^Chronic fatigue syndrome\\.?$",
"^Cartas? ao editor Letters? to the Editor$",
"^Note from the Editor$",
"^Anesthesia Abstract$",
"^Annual report$",
"(?i)^“?THE RADICAL PREVENTION OF VENEREAL DISEASE\\.?”?$",
"(?i)^Graph and Table of Infectious Diseases?$",
"^Presentation$",
"(?i)^Reviews and Information on Publications$",
"(?i)^PUBLIC HEALTH SERVICES?$",
"(?i)^COMBINED TEXT-?BOOK OF OBSTETRICS AND GYN(Æ|ae)COLOGY$",
"(?i)^Adrese autora$",
"(?i)^Systematic Part .*\\. Catalogus Fossilium Austriae, Band 2: Echinoidea neogenica$",
"(?i)^Acknowledgement to Referees$",
"(?i)^Behçet's disease\\.?$",
"(?i)^Isolation and identification of restriction endonuclease.*$",
"(?i)^CEREBROVASCULAR DISEASES?.?$",
"(?i)^Screening for abdominal aortic aneurysms?\\.?$",
"^Event management$",
"(?i)^Breakfast and Crohn's disease.*\\.?$",
"^Cálculo de concentraciones en disoluciones acuosas. Ejercicio interactivo\\..*\\.$",
"(?i)^Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of Autism spectrum disorders?\\.?$",
"^Gushi hakubutsugaku$",
"^Starobosanski nadpisi u Bosni i Hercegovini \\(.*\\)$",
"^Intestinal spirocha?etosis$",
"^Treatment of Rodent Ulcer$",
"(?i)^\\W*Cloud Computing\\W*$",
"^Compendio mathematico : en que se contienen todas las materias mas principales de las Ciencias que tratan de la cantidad$",
"^Free Communications, Poster Presentations: Session [A-F]$",
"^“The Historical Aspects? of Quackery\\.?”$",
"^A designated centre for people with disabilities operated by St John of God Community Services (Limited|Ltd), Louth$",
"^P(er|re)-Mile Premiums for Auto Insurance\\.?$",
"(?i)^Case Report$",
"^Boletín Informativo$",
"(?i)^Glioblastoma Multiforme$",
"(?i)^Nuevos táxones animales descritos en la península Ibérica y Macaronesia desde 1994 \\(.*\\)$",
"^Zaměstnanecké výhody$",
"(?i)^The Economics of Terrorism and Counter-Terrorism: A Survey \\(Part .*\\)$",
"(?i)^Carotid body tumours?\\.?$",
"(?i)^\\[Españoles en Francia : La condición Emigrante.*\\]$",
"^Avant-propos$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Head(s)? and Capital(s)?$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Bases?$",
"(?i)^PUBLIC HEALTH VERSUS THE STATE$",
"^Viñetas de Cortázar$",
"(?i)^Search for heavy neutrinos and W(\\[|_|\\(|_\\{|-)?R(\\]|\\)|\\})? bosons with right-handed couplings in a left-right symmetric model in pp collisions at.*TeV(\\.)?$",
"(?i)^Measurement of the pseudorapidity and centrality dependence of the transverse energy density in Pb(-?)Pb collisions at.*tev(\\.?)$",
"(?i)^Search for resonances decaying into top-quark pairs using fully hadronic decays in pp collisions with ATLAS at.*TeV$",
"(?i)^Search for neutral minimal supersymmetric standard model Higgs bosons decaying to tau pairs in pp collisions at.*tev$",
"(?i)^Relatório de Estágio (de|em) Angiologia e Cirurgia Vascular$",
"^Aus der AGMB$",
"^Znanstveno-stručni prilozi$",
"(?i)^Zhodnocení finanční situace podniku a návrhy na zlepšení$",
"(?i)^Evaluation of the Financial Situation in the Firm and Proposals to its Improvement$",
"(?i)^Hodnocení finanční situace podniku a návrhy na její zlepšení$",
"^Finanční analýza podniku$",
"^Financial analysis( of business)?$",
"(?i)^Textbook of Gyn(a)?(Æ)?(e)?cology$",
"^Jikken nihon shūshinsho$",
"(?i)^CORONER('|s)(s|') INQUESTS$",
"(?i)^(Μελέτη παραγόντων )?risk management( για ανάπτυξη και εφαρμογή ενός πληροφοριακού συστήματος| και ανάπτυξη συστήματος)?$",
"(?i)^Consultants' contract(s)?$",
"(?i)^Upute autorima$",
"(?i)^Bijdrage tot de Kennis van den Godsdienst der Dajaks van Lan(d|f)ak en Tajan$",
"^Joshi shin kokubun$",
"^Kōtō shōgaku dokuhon nōson'yō$",
"^Jinjō shōgaku shōka$",
"^Shōgaku shūjichō$",
"^Nihon joshi dokuhon$",
"^Joshi shin dokuhon$",
"^Chūtō kanbun dokuhon$",
"^Wabun dokuhon$",
"(?i)^(Analysis of economy selected village or town|Rozbor hospodaření vybrané obce či města)$",
"(?i)^cardiac rehabilitation$",
"(?i)^Analytical summary$",
"^Thesaurus resolutionum Sacrae Congregationis Concilii$",
"(?i)^Sumario analítico(\\s{1})?(Analitic summary)?$",
"^Prikazi i osvrti$",
"^Rodinný dům s provozovnou$",
"^Family house with an establishment$",
"^Shinsei chūtō shin kokugun$",
"^Pulmonary alveolar proteinosis(\\.?)$",
"^Shinshū kanbun$",
"^Viñeta(s?) de Rodríguez$",
"(?i)^RUBRIKA UREDNIKA$",
"^A Matching Model of the Academic Publication Market$",
"^Yōgaku kōyō$",
"^Internetový marketing$",
"^Internet marketing$",
"^Chūtō kokugo dokuhon$",
"^Kokugo dokuhon$",
"^Antibiotic Cover for Dental Extraction(s?)$",
"^Strategie podniku$",
"^Strategy of an Enterprise$",
"(?i)^respiratory disease(s?)(\\.?)$",
"^Award(s?) for Gallantry in Civil Defence$",
"^Podniková kultura$",
"^Corporate Culture$",
"^Severe hyponatraemia in hospital inpatient(s?)(\\.?)$",
"^Pracovní motivace$",
"^Work Motivation$",
"^Kaitei kōtō jogaku dokuhon$",
"^Konsolidovaná účetní závěrka$",
"^Consolidated Financial Statements$",
"(?i)^intracranial tumour(s?)$",
"^Climate Change Mitigation Options and Directed Technical Change: A Decentralized Equilibrium Analysis$",
"^\\[CERVECERIAS MAHOU(\\.|\\:) INTERIOR\\] \\[Material gráfico\\]$",
"^Housing Market Dynamics(\\:|\\.) On the Contribution of Income Shocks and Credit Constraint(s?)$",
"^\\[Funciones auxiliares de la música en Radio París,.*\\]$",
"^Úroveň motivačního procesu jako způsobu vedení lidí$",
"^The level of motivation process as a leadership$",
"^Pay-beds in N(\\.?)H(\\.?)S(\\.?) Hospitals$",
"(?i)^news and events$",
"(?i)^NOVOSTI I DOGAĐAJI$",
"^Sansū no gakushū$",
"^Posouzení informačního systému firmy a návrh změn$",
"^Information System Assessment and Proposal for ICT Modification$",
"^Stresové zatížení pracovníků ve vybrané profesi$",
"^Stress load in a specific job$",
"^Sunday: Poster Sessions, Pt.*$",
"^Monday: Poster Sessions, Pt.*$",
"^Wednesday: Poster Sessions, Pt.*",
"^Tuesday: Poster Sessions, Pt.*$",
"^Analýza reklamy$",
"^Analysis of advertising$",
"^Shōgaku shūshinsho$",
"^Shōgaku sansū$",
"^Shintei joshi kokubun$",
"^Taishō joshi kokubun dokuhon$",
"^Joshi kokubun$",
"^Účetní uzávěrka a účetní závěrka v ČR$",
"(?i)^The \"?Causes\"? of Cancer$",
"^Normas para la publicación de artículos$",
"^Editor('|s)(s|') [Rr]eply$",
"^Editor(’|s)(s|’) letter$",
"^Redaktoriaus žodis$",
"^DISCUSSION ON THE PRECEDING PAPER$",
"^Kōtō shōgaku shūshinsho jidōyō$",
"^Shōgaku nihon rekishi$",
"^(Theory of the flow of action currents in isolated myelinated nerve fibers).*$",
"^Préface$",
"^Occupational [Hh]ealth [Ss]ervices.$",
"^In Memoriam Professor Toshiyuki TAKESHIMA$",
"^Účetní závěrka ve vybraném podniku.*$",
"^Financial statements in selected company$",
"^Abdominal [Aa]ortic [Aa]neurysms.*$",
"^Pseudomyxoma peritonei$",
"^Kazalo autora$",
"(?i)^uvodna riječ$",
"^Motivace jako způsob vedení lidí$",
"^Motivation as a leadership$",
"^Polyfunkční dům$",
"^Multi\\-funkcional building$",
"^Podnikatelský plán$",
"(?i)^Podnikatelský záměr$",
"(?i)^Business Plan$",
"^Oceňování nemovitostí$",
"^Marketingová komunikace$",
"^Marketing communication$",
"^Sumario Analítico$",
"^Riječ uredništva$",
"^Savjetovanja i priredbe$",
"^Índice$",
"^(Starobosanski nadpisi).*$",
"^Vzdělávání pracovníků v organizaci$",
"^Staff training in organization$",
"^(Life Histories of North American Geometridae).*$",
"^Strategická analýza podniku$",
"^Strategic Analysis of an Enterprise$",
"^Sadržaj$",
"^Upute suradnicima$",
"^Rodinný dům$",
"(?i)^Fami(l)?ly house$",
"^Upute autorima$",
"^Strategic Analysis$",
"^Finanční analýza vybraného podniku$",
"^Finanční analýza$",
"^Riječ urednika$",
"(?i)^Content(s?)$",
"(?i)^Inhalt$",
"^Jinjō shōgaku shūshinsho jidōyō$",
"(?i)^Index$",
"^Chūgaku kokubun kyōkasho$",
"^Retrato de una mujer$",
"^Retrato de un hombre$",
"^Kōtō shōgaku dokuhon$",
"^Shotōka kokugo$",
"^Shōgaku dokuhon$",
"^Jinjō shōgaku kokugo dokuhon$",
"^Shinsei kokugo dokuhon$",
"^Teikoku dokuhon$",
"^Instructions to Authors$",
"^KİTAP TAHLİLİ$",
"^PRZEGLĄD PIŚMIENNICTWA$",
"(?i)^Presentación$",
"^İçindekiler$",
"(?i)^Tabl?e of contents$",
"^(CODICE DEL BEATO DE LOS REYES FERNANDO I Y SANCHA).*$",
"^(\\[MADRID\\. BIBL\\. NAC\\. N.*KING FERDINAND I.*FROM SAN ISIDORO DE LEON\\. FACUNDUS SCRIPSIT DATED.*\\]).*",
"^Editorial( Board)?$",
"(?i)^Editorial \\(English\\)$",
"^Editörden$",
"^(Corpus Oral Dialectal \\(COD\\)\\.).*$",
"^(Kiri Karl Morgensternile).*$",
"^(\\[Eksliibris Aleksandr).*\\]$",
"^(\\[Eksliibris Aleksandr).*$",
"^(Eksliibris Aleksandr).*$",
"^(Kiri A\\. de Vignolles).*$",
"^(2 kirja Karl Morgensternile).*$",
"^(Pirita kloostri idaosa arheoloogilised).*$",
"^(Kiri tundmatule).*$",
"^(Kiri Jenaer Allgemeine Literaturzeitung toimetusele).*$",
"^(Eksliibris Nikolai Birukovile).*$",
"^(Eksliibris Nikolai Issakovile).*$",
"^(WHP Cruise Summary Information of section).*$",
"^(Measurement of the top quark\\-pair production cross section with ATLAS in pp collisions at).*$",
"^(Measurement of the spin\\-dependent structure function).*",
"(?i)^.*authors['’′]? reply\\.?$",
"(?i)^.*authors['’′]? response\\.?$",
"^Data [mM]anagement [sS]ervices\\.$",
"Research and Advanced Technology for Digital Libraries"
]
},
"synonyms": {}
}
}

442
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/pub.new.tree.conf.json Normal file
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@ -0,0 +1,442 @@
{
"wf": {
"threshold": "0.99",
"dedupRun": "001",
"entityType": "result",
"subEntityType": "resulttype",
"subEntityValue": "publication",
"orderField": "title",
"queueMaxSize": "200",
"groupMaxSize": "100",
"maxChildren": "100",
"slidingWindowSize": "50",
"rootBuilder": [
"result",
"resultProject_outcome_isProducedBy",
"resultResult_publicationDataset_isRelatedTo",
"resultResult_similarity_isAmongTopNSimilarDocuments",
"resultResult_similarity_hasAmongTopNSimilarDocuments",
"resultOrganization_affiliation_isAffiliatedWith",
"resultResult_part_hasPart",
"resultResult_part_isPartOf",
"resultResult_supplement_isSupplementTo",
"resultResult_supplement_isSupplementedBy",
"resultResult_version_isVersionOf"
],
"includeChildren": "true",
"maxIterations": 20,
"idPath": "$.id"
},
"pace": {
"clustering": [
{
"name": "wordsStatsSuffixPrefixChain",
"fields": [
"title"
],
"params": {
"mod": "10"
}
},
{
"name": "lowercase",
"fields": [
"doi",
"altdoi"
],
"params": {
"collapseOn:pid": "0"
}
}
],
"decisionTree": {
"start": {
"fields": [
{
"field": "instance",
"comparator": "instanceTypeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer1",
"negative": "NO_MATCH",
"undefined": "layer1",
"ignoreUndefined": "true"
},
"layer1": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid"
}
},
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"crossCompare": "alternateid"
}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer2",
"negative": "layer3",
"undefined": "layer3",
"ignoreUndefined": "true"
},
"layer2": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"layer3": {
"fields": [
{
"field": "title",
"comparator": "titleVersionMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
},
{
"field": "authors",
"comparator": "sizeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1.0,
"aggregation": "AND",
"positive": "layer4",
"negative": "NO_MATCH",
"undefined": "layer4",
"ignoreUndefined": "false"
},
"layer4": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.99,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
}
},
"model": [
{
"name": "doi",
"type": "String",
"path": "$.instance[*].pid[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "altdoi",
"type": "String",
"path": "$.instance[*].alternateIdentifier[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "pid",
"type": "JSON",
"path": "$.instance[*].pid[*]",
"overrideMatch": "true"
},
{
"name": "alternateid",
"type": "JSON",
"path": "$.instance[*].alternateIdentifier[*]",
"overrideMatch": "true"
},
{
"name": "title",
"type": "String",
"path": "$.title[?(@.qualifier.classid == 'main title')].value",
"length": 250,
"size": 5
},
{
"name": "authors",
"type": "List",
"path": "$.author[*].fullname",
"size": 200
},
{
"name": "resulttype",
"type": "String",
"path": "$.resulttype.classid"
},
{
"name": "instance",
"type": "List",
"path": "$.instance[*].instancetype.classname"
}
],
"blacklists": {
"title": [
"(?i)^Data Management Plan",
"^Inside Front Cover$",
"(?i)^Poster presentations$",
"^THE ASSOCIATION AND THE GENERAL MEDICAL COUNCIL$",
"^Problems with perinatal pathology\\.?$",
"(?i)^Cases? of Puerperal Convulsions$",
"(?i)^Operative Gyna?ecology$",
"(?i)^Mind the gap\\!?\\:?$",
"^Chronic fatigue syndrome\\.?$",
"^Cartas? ao editor Letters? to the Editor$",
"^Note from the Editor$",
"^Anesthesia Abstract$",
"^Annual report$",
"(?i)^“?THE RADICAL PREVENTION OF VENEREAL DISEASE\\.?”?$",
"(?i)^Graph and Table of Infectious Diseases?$",
"^Presentation$",
"(?i)^Reviews and Information on Publications$",
"(?i)^PUBLIC HEALTH SERVICES?$",
"(?i)^COMBINED TEXT-?BOOK OF OBSTETRICS AND GYN(Æ|ae)COLOGY$",
"(?i)^Adrese autora$",
"(?i)^Systematic Part .*\\. Catalogus Fossilium Austriae, Band 2: Echinoidea neogenica$",
"(?i)^Acknowledgement to Referees$",
"(?i)^Behçet's disease\\.?$",
"(?i)^Isolation and identification of restriction endonuclease.*$",
"(?i)^CEREBROVASCULAR DISEASES?.?$",
"(?i)^Screening for abdominal aortic aneurysms?\\.?$",
"^Event management$",
"(?i)^Breakfast and Crohn's disease.*\\.?$",
"^Cálculo de concentraciones en disoluciones acuosas. Ejercicio interactivo\\..*\\.$",
"(?i)^Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of Autism spectrum disorders?\\.?$",
"^Gushi hakubutsugaku$",
"^Starobosanski nadpisi u Bosni i Hercegovini \\(.*\\)$",
"^Intestinal spirocha?etosis$",
"^Treatment of Rodent Ulcer$",
"(?i)^\\W*Cloud Computing\\W*$",
"^Compendio mathematico : en que se contienen todas las materias mas principales de las Ciencias que tratan de la cantidad$",
"^Free Communications, Poster Presentations: Session [A-F]$",
"^“The Historical Aspects? of Quackery\\.?”$",
"^A designated centre for people with disabilities operated by St John of God Community Services (Limited|Ltd), Louth$",
"^P(er|re)-Mile Premiums for Auto Insurance\\.?$",
"(?i)^Case Report$",
"^Boletín Informativo$",
"(?i)^Glioblastoma Multiforme$",
"(?i)^Nuevos táxones animales descritos en la península Ibérica y Macaronesia desde 1994 \\(.*\\)$",
"^Zaměstnanecké výhody$",
"(?i)^The Economics of Terrorism and Counter-Terrorism: A Survey \\(Part .*\\)$",
"(?i)^Carotid body tumours?\\.?$",
"(?i)^\\[Españoles en Francia : La condición Emigrante.*\\]$",
"^Avant-propos$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Head(s)? and Capital(s)?$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Bases?$",
"(?i)^PUBLIC HEALTH VERSUS THE STATE$",
"^Viñetas de Cortázar$",
"(?i)^Search for heavy neutrinos and W(\\[|_|\\(|_\\{|-)?R(\\]|\\)|\\})? bosons with right-handed couplings in a left-right symmetric model in pp collisions at.*TeV(\\.)?$",
"(?i)^Measurement of the pseudorapidity and centrality dependence of the transverse energy density in Pb(-?)Pb collisions at.*tev(\\.?)$",
"(?i)^Search for resonances decaying into top-quark pairs using fully hadronic decays in pp collisions with ATLAS at.*TeV$",
"(?i)^Search for neutral minimal supersymmetric standard model Higgs bosons decaying to tau pairs in pp collisions at.*tev$",
"(?i)^Relatório de Estágio (de|em) Angiologia e Cirurgia Vascular$",
"^Aus der AGMB$",
"^Znanstveno-stručni prilozi$",
"(?i)^Zhodnocení finanční situace podniku a návrhy na zlepšení$",
"(?i)^Evaluation of the Financial Situation in the Firm and Proposals to its Improvement$",
"(?i)^Hodnocení finanční situace podniku a návrhy na její zlepšení$",
"^Finanční analýza podniku$",
"^Financial analysis( of business)?$",
"(?i)^Textbook of Gyn(a)?(Æ)?(e)?cology$",
"^Jikken nihon shūshinsho$",
"(?i)^CORONER('|s)(s|') INQUESTS$",
"(?i)^(Μελέτη παραγόντων )?risk management( για ανάπτυξη και εφαρμογή ενός πληροφοριακού συστήματος| και ανάπτυξη συστήματος)?$",
"(?i)^Consultants' contract(s)?$",
"(?i)^Upute autorima$",
"(?i)^Bijdrage tot de Kennis van den Godsdienst der Dajaks van Lan(d|f)ak en Tajan$",
"^Joshi shin kokubun$",
"^Kōtō shōgaku dokuhon nōson'yō$",
"^Jinjō shōgaku shōka$",
"^Shōgaku shūjichō$",
"^Nihon joshi dokuhon$",
"^Joshi shin dokuhon$",
"^Chūtō kanbun dokuhon$",
"^Wabun dokuhon$",
"(?i)^(Analysis of economy selected village or town|Rozbor hospodaření vybrané obce či města)$",
"(?i)^cardiac rehabilitation$",
"(?i)^Analytical summary$",
"^Thesaurus resolutionum Sacrae Congregationis Concilii$",
"(?i)^Sumario analítico(\\s{1})?(Analitic summary)?$",
"^Prikazi i osvrti$",
"^Rodinný dům s provozovnou$",
"^Family house with an establishment$",
"^Shinsei chūtō shin kokugun$",
"^Pulmonary alveolar proteinosis(\\.?)$",
"^Shinshū kanbun$",
"^Viñeta(s?) de Rodríguez$",
"(?i)^RUBRIKA UREDNIKA$",
"^A Matching Model of the Academic Publication Market$",
"^Yōgaku kōyō$",
"^Internetový marketing$",
"^Internet marketing$",
"^Chūtō kokugo dokuhon$",
"^Kokugo dokuhon$",
"^Antibiotic Cover for Dental Extraction(s?)$",
"^Strategie podniku$",
"^Strategy of an Enterprise$",
"(?i)^respiratory disease(s?)(\\.?)$",
"^Award(s?) for Gallantry in Civil Defence$",
"^Podniková kultura$",
"^Corporate Culture$",
"^Severe hyponatraemia in hospital inpatient(s?)(\\.?)$",
"^Pracovní motivace$",
"^Work Motivation$",
"^Kaitei kōtō jogaku dokuhon$",
"^Konsolidovaná účetní závěrka$",
"^Consolidated Financial Statements$",
"(?i)^intracranial tumour(s?)$",
"^Climate Change Mitigation Options and Directed Technical Change: A Decentralized Equilibrium Analysis$",
"^\\[CERVECERIAS MAHOU(\\.|\\:) INTERIOR\\] \\[Material gráfico\\]$",
"^Housing Market Dynamics(\\:|\\.) On the Contribution of Income Shocks and Credit Constraint(s?)$",
"^\\[Funciones auxiliares de la música en Radio París,.*\\]$",
"^Úroveň motivačního procesu jako způsobu vedení lidí$",
"^The level of motivation process as a leadership$",
"^Pay-beds in N(\\.?)H(\\.?)S(\\.?) Hospitals$",
"(?i)^news and events$",
"(?i)^NOVOSTI I DOGAĐAJI$",
"^Sansū no gakushū$",
"^Posouzení informačního systému firmy a návrh změn$",
"^Information System Assessment and Proposal for ICT Modification$",
"^Stresové zatížení pracovníků ve vybrané profesi$",
"^Stress load in a specific job$",
"^Sunday: Poster Sessions, Pt.*$",
"^Monday: Poster Sessions, Pt.*$",
"^Wednesday: Poster Sessions, Pt.*",
"^Tuesday: Poster Sessions, Pt.*$",
"^Analýza reklamy$",
"^Analysis of advertising$",
"^Shōgaku shūshinsho$",
"^Shōgaku sansū$",
"^Shintei joshi kokubun$",
"^Taishō joshi kokubun dokuhon$",
"^Joshi kokubun$",
"^Účetní uzávěrka a účetní závěrka v ČR$",
"(?i)^The \"?Causes\"? of Cancer$",
"^Normas para la publicación de artículos$",
"^Editor('|s)(s|') [Rr]eply$",
"^Editor(’|s)(s|’) letter$",
"^Redaktoriaus žodis$",
"^DISCUSSION ON THE PRECEDING PAPER$",
"^Kōtō shōgaku shūshinsho jidōyō$",
"^Shōgaku nihon rekishi$",
"^(Theory of the flow of action currents in isolated myelinated nerve fibers).*$",
"^Préface$",
"^Occupational [Hh]ealth [Ss]ervices.$",
"^In Memoriam Professor Toshiyuki TAKESHIMA$",
"^Účetní závěrka ve vybraném podniku.*$",
"^Financial statements in selected company$",
"^Abdominal [Aa]ortic [Aa]neurysms.*$",
"^Pseudomyxoma peritonei$",
"^Kazalo autora$",
"(?i)^uvodna riječ$",
"^Motivace jako způsob vedení lidí$",
"^Motivation as a leadership$",
"^Polyfunkční dům$",
"^Multi\\-funkcional building$",
"^Podnikatelský plán$",
"(?i)^Podnikatelský záměr$",
"(?i)^Business Plan$",
"^Oceňování nemovitostí$",
"^Marketingová komunikace$",
"^Marketing communication$",
"^Sumario Analítico$",
"^Riječ uredništva$",
"^Savjetovanja i priredbe$",
"^Índice$",
"^(Starobosanski nadpisi).*$",
"^Vzdělávání pracovníků v organizaci$",
"^Staff training in organization$",
"^(Life Histories of North American Geometridae).*$",
"^Strategická analýza podniku$",
"^Strategic Analysis of an Enterprise$",
"^Sadržaj$",
"^Upute suradnicima$",
"^Rodinný dům$",
"(?i)^Fami(l)?ly house$",
"^Upute autorima$",
"^Strategic Analysis$",
"^Finanční analýza vybraného podniku$",
"^Finanční analýza$",
"^Riječ urednika$",
"(?i)^Content(s?)$",
"(?i)^Inhalt$",
"^Jinjō shōgaku shūshinsho jidōyō$",
"(?i)^Index$",
"^Chūgaku kokubun kyōkasho$",
"^Retrato de una mujer$",
"^Retrato de un hombre$",
"^Kōtō shōgaku dokuhon$",
"^Shotōka kokugo$",
"^Shōgaku dokuhon$",
"^Jinjō shōgaku kokugo dokuhon$",
"^Shinsei kokugo dokuhon$",
"^Teikoku dokuhon$",
"^Instructions to Authors$",
"^KİTAP TAHLİLİ$",
"^PRZEGLĄD PIŚMIENNICTWA$",
"(?i)^Presentación$",
"^İçindekiler$",
"(?i)^Tabl?e of contents$",
"^(CODICE DEL BEATO DE LOS REYES FERNANDO I Y SANCHA).*$",
"^(\\[MADRID\\. BIBL\\. NAC\\. N.*KING FERDINAND I.*FROM SAN ISIDORO DE LEON\\. FACUNDUS SCRIPSIT DATED.*\\]).*",
"^Editorial( Board)?$",
"(?i)^Editorial \\(English\\)$",
"^Editörden$",
"^(Corpus Oral Dialectal \\(COD\\)\\.).*$",
"^(Kiri Karl Morgensternile).*$",
"^(\\[Eksliibris Aleksandr).*\\]$",
"^(\\[Eksliibris Aleksandr).*$",
"^(Eksliibris Aleksandr).*$",
"^(Kiri A\\. de Vignolles).*$",
"^(2 kirja Karl Morgensternile).*$",
"^(Pirita kloostri idaosa arheoloogilised).*$",
"^(Kiri tundmatule).*$",
"^(Kiri Jenaer Allgemeine Literaturzeitung toimetusele).*$",
"^(Eksliibris Nikolai Birukovile).*$",
"^(Eksliibris Nikolai Issakovile).*$",
"^(WHP Cruise Summary Information of section).*$",
"^(Measurement of the top quark\\-pair production cross section with ATLAS in pp collisions at).*$",
"^(Measurement of the spin\\-dependent structure function).*",
"(?i)^.*authors['’′]? reply\\.?$",
"(?i)^.*authors['’′]? response\\.?$",
"^Data [mM]anagement [sS]ervices\\.$",
"Research and Advanced Technology for Digital Libraries"
]
},
"synonyms": {}
}
}

2
dnet-pace-core/pom.xml
View File

@ -67,8 +67,6 @@
<artifactId>json-path</artifactId>
</dependency>
</dependencies>
</project>

7
dnet-pace-core/src/main/java/eu/dnetlib/pace/common/AbstractPaceFunctions.java
View File

@ -44,6 +44,9 @@ public abstract class AbstractPaceFunctions {
//blacklist of ngrams: to avoid generic keys
protected static Set<String> ngramBlacklist = loadFromClasspath("/eu/dnetlib/pace/config/ngram_blacklist.txt");
//html regex for normalization
public final String HTML_REGEX = "<[^>]*>";
private static final String alpha = "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 ";
private static final String aliases_from = "⁰¹²³⁴⁵⁶⁷⁸⁹⁺⁻⁼⁽⁾ⁿ₀₁₂₃₄₅₆₇₈₉₊₋₌₍₎àáâäæãåāèéêëēėęəîïíīįìôöòóœøōõûüùúūßśšłžźżçćčñń";
private static final String aliases_to = "0123456789+-=()n0123456789+-=()aaaaaaaaeeeeeeeeiiiiiioooooooouuuuussslzzzcccnn";
@ -62,7 +65,9 @@ public abstract class AbstractPaceFunctions {
}
protected String cleanup(final String s) {
final String s0 = unicodeNormalization(s.toLowerCase());
final String s00 = s.replaceAll(HTML_REGEX, "");
final String s0 = unicodeNormalization(s00.toLowerCase());
final String s1 = fixAliases(s0);
final String s2 = nfd(s1);
final String s3 = s2.replaceAll("&ndash;", " ");

85
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/AuthorsMatch.java Normal file
View File

@ -0,0 +1,85 @@
package eu.dnetlib.pace.tree;
import com.google.common.collect.Iterables;
import com.wcohen.ss.JaroWinkler;
import eu.dnetlib.pace.config.Config;
import eu.dnetlib.pace.model.Field;
import eu.dnetlib.pace.model.FieldList;
import eu.dnetlib.pace.model.Person;
import eu.dnetlib.pace.tree.support.AbstractComparator;
import eu.dnetlib.pace.tree.support.ComparatorClass;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.function.Function;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ComparatorClass("authorsMatch")
public class AuthorsMatch extends AbstractComparator {
Map<String, String> params;
private double SURNAME_THRESHOLD;
private double NAME_THRESHOLD;
private double FULLNAME_THRESHOLD;
private String MODE; //full or surname
public AuthorsMatch(Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
this.params = params;
MODE = params.getOrDefault("mode", "full");
SURNAME_THRESHOLD = Double.parseDouble(params.getOrDefault("surname_th", "0.95"));
NAME_THRESHOLD = Double.parseDouble(params.getOrDefault("name_th", "0.95"));
FULLNAME_THRESHOLD = Double.parseDouble(params.getOrDefault("fullname_th", "0.9"));
}
@Override
public double compare(final Field a, final Field b, final Config conf) {
if (a.isEmpty() || b.isEmpty())
return -1;
List<Person> aList = ((FieldList) a).stringList().stream().map(author -> new Person(author, false)).collect(Collectors.toList());
List<Person> bList = ((FieldList) b).stringList().stream().map(author -> new Person(author, false)).collect(Collectors.toList());
int common = 0;
for (Person p1 : aList)
for (Person p2 : bList)
if(MODE.equals("full")) {
if (personComparator(p1, p2))
common += 1;
}
else {
if (surnameComparator(p1, p2))
common += 1;
}
return (double)common / (aList.size() + bList.size() - common);
}
public boolean personComparator(Person p1, Person p2) {
if(!p1.isAccurate() || !p2.isAccurate())
return ssalgo.score(p1.getOriginal(), p2.getOriginal()) > FULLNAME_THRESHOLD;
if(ssalgo.score(p1.getSurnameString(),p2.getSurnameString()) > SURNAME_THRESHOLD)
if(p1.getNameString().length()<=2 || p2.getNameString().length()<=2)
return firstLC(p1.getNameString()).equals(firstLC(p2.getNameString()));
else
return ssalgo.score(p1.getNameString(), p2.getNameString()) > NAME_THRESHOLD;
else
return false;
}
public boolean surnameComparator(Person p1, Person p2) {
if(!p1.isAccurate() || !p2.isAccurate())
return ssalgo.score(p1.getOriginal(), p2.getOriginal()) > FULLNAME_THRESHOLD;
return ssalgo.score(p1.getSurnameString(), p2.getSurnameString()) > SURNAME_THRESHOLD;
}
}

6
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/InstanceTypeMatch.java
View File

@ -5,6 +5,7 @@ import eu.dnetlib.pace.config.Config;
import eu.dnetlib.pace.model.Field;
import eu.dnetlib.pace.model.FieldList;
import eu.dnetlib.pace.tree.support.AbstractComparator;
import eu.dnetlib.pace.tree.support.ComparatorClass;
import java.util.HashMap;
import java.util.List;
@ -12,6 +13,7 @@ import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
@ComparatorClass("instanceTypeMatch")
public class InstanceTypeMatch extends AbstractComparator {
final Map<String, String> translationMap = new HashMap<>();
@ -41,6 +43,10 @@ public class InstanceTypeMatch extends AbstractComparator {
@Override
public double compare(final Field a, final Field b, final Config conf) {
if (a == null || b == null) {
return -1;
}
final List<String> sa = ((FieldList) a).stringList();
final List<String> sb = ((FieldList) b).stringList();

9
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/JsonListMatch.java
View File

@ -21,9 +21,13 @@ public class JsonListMatch extends AbstractComparator {
private static final Log log = LogFactory.getLog(JsonListMatch.class);
private Map<String, String> params;
private String MODE; //"percentage" or "count"
public JsonListMatch(final Map<String, String> params) {
super(params);
this.params = params;
MODE = params.getOrDefault("mode", "percentage");
}
@Override
@ -46,7 +50,10 @@ public class JsonListMatch extends AbstractComparator {
return 0.0;
}
return (double)incommon / (incommon + simDiff);
if (MODE.equals("percentage"))
return (double)incommon / (incommon + simDiff);
else
return incommon;
}

74
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/ListContainsMatch.java Normal file
View File

@ -0,0 +1,74 @@
package eu.dnetlib.pace.tree;
import com.google.common.collect.Sets;
import eu.dnetlib.pace.config.Config;
import eu.dnetlib.pace.model.Field;
import eu.dnetlib.pace.model.FieldList;
import eu.dnetlib.pace.tree.support.AbstractComparator;
import eu.dnetlib.pace.tree.support.ComparatorClass;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
/**
* The Class Contains match
*
* @author miconis
* */
@ComparatorClass("listContainsMatch")
public class ListContainsMatch extends AbstractComparator {
private Map<String, String> params;
private boolean CASE_SENSITIVE;
private String STRING;
private String AGGREGATOR;
public ListContainsMatch(Map<String, String> params) {
super(params);
this.params = params;
//read parameters
CASE_SENSITIVE = Boolean.parseBoolean(params.getOrDefault("caseSensitive", "false"));
STRING = params.get("string");
AGGREGATOR = params.get("bool");
}
@Override
public double compare(final Field a, final Field b, final Config conf) {
List<String> sa = ((FieldList) a).stringList();
List<String> sb = ((FieldList) b).stringList();
if (sa.isEmpty() || sb.isEmpty()) {
return -1;
}
if (!CASE_SENSITIVE) {
sa = sa.stream().map(String::toLowerCase).collect(Collectors.toList());
sb = sb.stream().map(String::toLowerCase).collect(Collectors.toList());
STRING = STRING.toLowerCase();
}
switch(AGGREGATOR) {
case "AND":
if(sa.contains(STRING) && sb.contains(STRING))
return 1.0;
break;
case "OR":
if(sa.contains(STRING) || sb.contains(STRING))
return 1.0;
break;
case "XOR":
if(sa.contains(STRING) ^ sb.contains(STRING))
return 1.0;
break;
default:
return 0.0;
}
return 0.0;
}
}

32
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/ContainsMatch.java → dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/StringContainsMatch.java
View File

@ -11,42 +11,48 @@ import java.util.Map;
*
* @author miconis
* */
@ComparatorClass("containsMatch")
public class ContainsMatch extends AbstractComparator {
@ComparatorClass("stringContainsMatch")
public class StringContainsMatch extends AbstractComparator {
private Map<String, String> params;
public ContainsMatch(Map<String, String> params) {
private boolean CASE_SENSITIVE;
private String STRING;
private String AGGREGATOR;
public StringContainsMatch(Map<String, String> params) {
super(params);
this.params = params;
//read parameters
CASE_SENSITIVE = Boolean.parseBoolean(params.getOrDefault("caseSensitive", "false"));
STRING = params.get("string");
AGGREGATOR = params.get("aggregator");
}
@Override
public double distance(final String a, final String b, final Config conf) {
//read parameters
boolean caseSensitive = Boolean.parseBoolean(params.getOrDefault("caseSensitive", "false"));
String string = params.get("string");
String agg = params.get("bool");
String ca = a;
String cb = b;
if (!caseSensitive) {
if (!CASE_SENSITIVE) {
ca = a.toLowerCase();
cb = b.toLowerCase();
STRING = STRING.toLowerCase();
}
switch(agg) {
switch(AGGREGATOR) {
case "AND":
if(ca.contains(string) && cb.contains(string))
if(ca.contains(STRING) && cb.contains(STRING))
return 1.0;
break;
case "OR":
if(ca.contains(string) || cb.contains(string))
if(ca.contains(STRING) || cb.contains(STRING))
return 1.0;
break;
case "XOR":
if(ca.contains(string) ^ cb.contains(string))
if(ca.contains(STRING) ^ cb.contains(STRING))
return 1.0;
break;
default:

29
dnet-pace-core/src/main/java/eu/dnetlib/pace/util/BlockProcessorForTesting.java
View File

@ -7,11 +7,7 @@ import eu.dnetlib.pace.config.WfConfig;
import eu.dnetlib.pace.model.Field;
import eu.dnetlib.pace.model.MapDocument;
import eu.dnetlib.pace.model.MapDocumentComparator;
import eu.dnetlib.pace.tree.JsonListMatch;
import eu.dnetlib.pace.tree.LevensteinTitle;
import eu.dnetlib.pace.tree.SizeMatch;
import eu.dnetlib.pace.tree.TitleVersionMatch;
import eu.dnetlib.pace.tree.support.FieldStats;
import eu.dnetlib.pace.tree.*;
import eu.dnetlib.pace.tree.support.TreeProcessor;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
@ -159,13 +155,17 @@ public class BlockProcessorForTesting {
if (!idCurr.equals(idPivot) && (fieldCurr != null)) {
// if (new TreeProcessor(dedupConf).compare(pivot, curr) == true && publicationCompare(pivot, curr, dedupConf) == false)
// emitOutput(true, idPivot, idCurr, context);
//
if(useTree)
if(!compareInstanceType(pivot, curr, dedupConf)){
emitOutput(new TreeProcessor(dedupConf).compare(pivot, curr), idPivot, idCurr, context);
else
emitOutput(publicationCompare(pivot, curr, dedupConf), idPivot, idCurr, context);
}
else {
emitOutput(false, idPivot, idCurr, context);
}
// if(useTree)
// emitOutput(new TreeProcessor(dedupConf).compare(pivot, curr), idPivot, idCurr, context);
// else
// emitOutput(publicationCompare(pivot, curr, dedupConf), idPivot, idCurr, context);
}
}
@ -173,6 +173,13 @@ public class BlockProcessorForTesting {
}
}
protected static boolean compareInstanceType(MapDocument a, MapDocument b, DedupConfig conf) {
Map<String, String> params = new HashMap<>();
InstanceTypeMatch instanceTypeMatch = new InstanceTypeMatch(params);
double compare = instanceTypeMatch.compare(a.getFieldMap().get("instance"), b.getFieldMap().get("instance"), conf);
return compare>=1.0;
}
private boolean publicationCompare(MapDocument a, MapDocument b, DedupConfig config) {
double score = 0.0;

102
dnet-pace-core/src/test/java/eu/dnetlib/pace/comparators/ComparatorTest.java
View File

@ -3,19 +3,12 @@ package eu.dnetlib.pace.comparators;
import eu.dnetlib.pace.AbstractPaceTest;
import eu.dnetlib.pace.clustering.NGramUtils;
import eu.dnetlib.pace.model.Field;
import eu.dnetlib.pace.model.FieldListImpl;
import eu.dnetlib.pace.model.FieldValueImpl;
import eu.dnetlib.pace.model.MapDocument;
import eu.dnetlib.pace.tree.*;
import eu.dnetlib.pace.config.DedupConfig;
import eu.dnetlib.pace.util.MapDocumentUtil;
import org.junit.jupiter.api.*;
import static org.junit.jupiter.api.Assertions.assertEquals;
import eu.dnetlib.pace.common.AbstractPaceFunctions;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
@ -30,8 +23,11 @@ public class ComparatorTest extends AbstractPaceTest {
public void setup() {
params = new HashMap<>();
params.put("weight", "1.0");
params.put("surname_th", "0.99");
params.put("name_th", "0.95");
params.put("jpath_value", "$.value");
params.put("jpath_classid", "$.qualifier.classid");
conf = DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/config/organization.current.conf.json", ComparatorTest.class));
}
@Test
@ -82,15 +78,46 @@ public class ComparatorTest extends AbstractPaceTest {
}
@Test
public void containsMatchTest(){
public void listContainsMatchTest(){
Field a = createFieldList(Arrays.asList("Article", "Publication", "ORP"), "instanceType");
Field b = createFieldList(Arrays.asList("Publication", "Article", "ORP"), "instanceType");
params.put("string", "Article");
params.put("bool", "XOR");
params.put("caseSensitive", "false");
ListContainsMatch listContainsMatch = new ListContainsMatch(params);
assertEquals(0.0, listContainsMatch.compare(a, b, conf));
params.put("string", "Article");
params.put("bool", "AND");
params.put("caseSensitive", "false");
listContainsMatch = new ListContainsMatch(params);
assertEquals(1.0, listContainsMatch.compare(a, b, conf));
}
@Test
public void stringContainsMatchTest(){
params.put("string", "openorgs");
params.put("bool", "XOR");
params.put("caseSensitive", "false");
final ContainsMatch containsMatch = new ContainsMatch(params);
StringContainsMatch stringContainsMatch = new StringContainsMatch(params);
assertEquals(0.0, containsMatch.distance("openorgs", "openorgs", conf));
assertEquals(0.0, stringContainsMatch.distance("openorgs", "openorgs", conf));
params.put("string", "openorgs");
params.put("bool", "AND");
params.put("caseSensitive", "false");
stringContainsMatch = new StringContainsMatch(params);
assertEquals(1.0, stringContainsMatch.distance("openorgs", "openorgs", conf));
}
@Test
@ -122,7 +149,6 @@ public class ComparatorTest extends AbstractPaceTest {
result = jaroWinklerNormalizedName.distance("NOAA - Servicio Meteorol\\u00f3gico Nacional", "NOAA - NWS", conf);
System.out.println("result = " + result);
}
@Test
@ -150,7 +176,8 @@ public class ComparatorTest extends AbstractPaceTest {
public void levensteinTitleTest() {
final LevensteinTitle levensteinTitle = new LevensteinTitle(params);
double result = levensteinTitle.distance("JRC: Open Power Plants Database", "JRC Open Power Plants Database (JRC-PPDB-OPEN)", conf);
double result = levensteinTitle.distance("Degradation of lignin β‐aryl ether units in Arabidopsis thaliana expressing LigD, LigF and LigG from Sphingomonas paucimobilis SYK‐6", "Degradation of lignin β-aryl ether units in <i>Arabidopsis thaliana</i> expressing <i>LigD</i>, <i>LigF</i> and <i>LigG</i> from <i>Sphingomonas paucimobilis</i> SYK-6", conf);
System.out.println("result = " + result);
}
@ -181,6 +208,55 @@ public class ComparatorTest extends AbstractPaceTest {
result = instanceTypeMatch.compare(e, g, conf);
assertEquals(0.0, result);
Field h = createFieldList(Arrays.asList("Other literature type", "Article"), "instanceType");
result = instanceTypeMatch.compare(a, h, conf);
assertEquals(1.0, result);
}
@Test
public void authorsMatchTest() {
AuthorsMatch authorsMatch = new AuthorsMatch(params);
Field a = createFieldList(Arrays.asList("La Bruzzo, Sandro", "Atzori, Claudio", "De Bonis, Michele"), "authors");
Field b = createFieldList(Arrays.asList("Atzori, C.", "La Bruzzo, S.", "De Bonis, M."), "authors");
double result = authorsMatch.compare(a, b, conf);
assertEquals(1.0, result);
Field c = createFieldList(Arrays.asList("Manghi, Paolo"), "authors");
Field d = createFieldList(Arrays.asList("Manghi, Pasquale"), "authors");
result = authorsMatch.compare(c, d, conf);
assertEquals(0.0, result) ;
params.put("mode", "surname");
authorsMatch = new AuthorsMatch(params);
result = authorsMatch.compare(c, d, conf);
assertEquals(1.0, result);
}
@Test
public void jsonListMatch() {
JsonListMatch jsonListMatch = new JsonListMatch(params);
Field a = createFieldList(Arrays.asList("{\"datainfo\":{\"deletedbyinference\":false,\"inferenceprovenance\":null,\"inferred\":false,\"invisible\":false,\"provenanceaction\":{\"classid\":\"sysimport:actionset\",\"classname\":\"Harvested\",\"schemeid\":\"dnet:provenanceActions\",\"schemename\":\"dnet:provenanceActions\"},\"trust\":\"0.9\"},\"qualifier\":{\"classid\":\"doi\",\"classname\":\"Digital Object Identifier\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\"},\"value\":\"10.1111/pbi.12655\"}"), "authors");
Field b = createFieldList(Arrays.asList("{\"datainfo\":{\"deletedbyinference\":false,\"inferenceprovenance\":\"\",\"inferred\":false,\"invisible\":false,\"provenanceaction\":{\"classid\":\"sysimport:crosswalk:repository\",\"classname\":\"Harvested\",\"schemeid\":\"dnet:provenanceActions\",\"schemename\":\"dnet:provenanceActions\"},\"trust\":\"0.9\"},\"qualifier\":{\"classid\":\"pmc\",\"classname\":\"PubMed Central ID\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\"},\"value\":\"PMC5399005\"}","{\"datainfo\":{\"deletedbyinference\":false,\"inferenceprovenance\":\"\",\"inferred\":false,\"invisible\":false,\"provenanceaction\":{\"classid\":\"sysimport:crosswalk:repository\",\"classname\":\"Harvested\",\"schemeid\":\"dnet:provenanceActions\",\"schemename\":\"dnet:provenanceActions\"},\"trust\":\"0.9\"},\"qualifier\":{\"classid\":\"pmid\",\"classname\":\"PubMed ID\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\"},\"value\":\"27775869\"}","{\"datainfo\":{\"deletedbyinference\":false,\"inferenceprovenance\":\"\",\"inferred\":false,\"invisible\":false,\"provenanceaction\":{\"classid\":\"user:claim\",\"classname\":\"Linked by user\",\"schemeid\":\"dnet:provenanceActions\",\"schemename\":\"dnet:provenanceActions\"},\"trust\":\"0.9\"},\"qualifier\":{\"classid\":\"doi\",\"classname\":\"Digital Object Identifier\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\"},\"value\":\"10.1111/pbi.12655\"}","{\"datainfo\":{\"deletedbyinference\":false,\"inferenceprovenance\":\"\",\"inferred\":false,\"invisible\":false,\"provenanceaction\":{\"classid\":\"sysimport:crosswalk:repository\",\"classname\":\"Harvested\",\"schemeid\":\"dnet:provenanceActions\",\"schemename\":\"dnet:provenanceActions\"},\"trust\":\"0.9\"},\"qualifier\":{\"classid\":\"handle\",\"classname\":\"Handle\",\"schemeid\":\"dnet:pid_types\",\"schemename\":\"dnet:pid_types\"},\"value\":\"1854/LU-8523529\"}"), "authors");
double result = jsonListMatch.compare(a, b, conf);
assertEquals(0.25, result);
params.put("mode", "count");
jsonListMatch = new JsonListMatch(params);
result = jsonListMatch.compare(a, b, conf);
assertEquals(1.0, result);
}

1
dnet-pace-core/src/test/java/eu/dnetlib/pace/config/ConfigTest.java
View File

@ -101,7 +101,6 @@ public class ConfigTest extends AbstractPaceTest {
System.out.println("mapDocument = " + mapDocument.getFieldMap().get("title").stringValue());
}
@Test

442
dnet-pace-core/src/test/resources/eu/dnetlib/pace/config/pub.instancetype.tree.conf.json Normal file
View File

@ -0,0 +1,442 @@
{
"wf": {
"threshold": "0.99",
"dedupRun": "001",
"entityType": "result",
"subEntityType": "resulttype",
"subEntityValue": "publication",
"orderField": "title",
"queueMaxSize": "200",
"groupMaxSize": "100",
"maxChildren": "100",
"slidingWindowSize": "50",
"rootBuilder": [
"result",
"resultProject_outcome_isProducedBy",
"resultResult_publicationDataset_isRelatedTo",
"resultResult_similarity_isAmongTopNSimilarDocuments",
"resultResult_similarity_hasAmongTopNSimilarDocuments",
"resultOrganization_affiliation_isAffiliatedWith",
"resultResult_part_hasPart",
"resultResult_part_isPartOf",
"resultResult_supplement_isSupplementTo",
"resultResult_supplement_isSupplementedBy",
"resultResult_version_isVersionOf"
],
"includeChildren": "true",
"maxIterations": 20,
"idPath": "$.id"
},
"pace": {
"clustering": [
{
"name": "wordsStatsSuffixPrefixChain",
"fields": [
"title"
],
"params": {
"mod": "10"
}
},
{
"name": "lowercase",
"fields": [
"doi",
"altdoi"
],
"params": {
"collapseOn:pid": "0"
}
}
],
"decisionTree": {
"start": {
"fields": [
{
"field": "instance",
"comparator": "instanceTypeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer1",
"negative": "NO_MATCH",
"undefined": "layer1",
"ignoreUndefined": "true"
},
"layer1": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid"
}
},
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"crossCompare": "alternateid"
}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "layer2",
"negative": "layer3",
"undefined": "layer3",
"ignoreUndefined": "true"
},
"layer2": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"layer3": {
"fields": [
{
"field": "title",
"comparator": "titleVersionMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
},
{
"field": "authors",
"comparator": "sizeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1.0,
"aggregation": "AND",
"positive": "layer4",
"negative": "NO_MATCH",
"undefined": "layer4",
"ignoreUndefined": "false"
},
"layer4": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.99,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
}
},
"model": [
{
"name": "doi",
"type": "String",
"path": "$.instance[*].pid[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "altdoi",
"type": "String",
"path": "$.instance[*].alternateIdentifier[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "pid",
"type": "JSON",
"path": "$.instance[*].pid[*]",
"overrideMatch": "true"
},
{
"name": "alternateid",
"type": "JSON",
"path": "$.instance[*].alternateIdentifier[*]",
"overrideMatch": "true"
},
{
"name": "title",
"type": "String",
"path": "$.title[?(@.qualifier.classid == 'main title')].value",
"length": 250,
"size": 5
},
{
"name": "authors",
"type": "List",
"path": "$.author[*].fullname",
"size": 200
},
{
"name": "resulttype",
"type": "String",
"path": "$.resulttype.classid"
},
{
"name": "instance",
"type": "List",
"path": "$.instance[*].instancetype.classname"
}
],
"blacklists": {
"title": [
"(?i)^Data Management Plan",
"^Inside Front Cover$",
"(?i)^Poster presentations$",
"^THE ASSOCIATION AND THE GENERAL MEDICAL COUNCIL$",
"^Problems with perinatal pathology\\.?$",
"(?i)^Cases? of Puerperal Convulsions$",
"(?i)^Operative Gyna?ecology$",
"(?i)^Mind the gap\\!?\\:?$",
"^Chronic fatigue syndrome\\.?$",
"^Cartas? ao editor Letters? to the Editor$",
"^Note from the Editor$",
"^Anesthesia Abstract$",
"^Annual report$",
"(?i)^“?THE RADICAL PREVENTION OF VENEREAL DISEASE\\.?”?$",
"(?i)^Graph and Table of Infectious Diseases?$",
"^Presentation$",
"(?i)^Reviews and Information on Publications$",
"(?i)^PUBLIC HEALTH SERVICES?$",
"(?i)^COMBINED TEXT-?BOOK OF OBSTETRICS AND GYN(Æ|ae)COLOGY$",
"(?i)^Adrese autora$",
"(?i)^Systematic Part .*\\. Catalogus Fossilium Austriae, Band 2: Echinoidea neogenica$",
"(?i)^Acknowledgement to Referees$",
"(?i)^Behçet's disease\\.?$",
"(?i)^Isolation and identification of restriction endonuclease.*$",
"(?i)^CEREBROVASCULAR DISEASES?.?$",
"(?i)^Screening for abdominal aortic aneurysms?\\.?$",
"^Event management$",
"(?i)^Breakfast and Crohn's disease.*\\.?$",
"^Cálculo de concentraciones en disoluciones acuosas. Ejercicio interactivo\\..*\\.$",
"(?i)^Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of Autism spectrum disorders?\\.?$",
"^Gushi hakubutsugaku$",
"^Starobosanski nadpisi u Bosni i Hercegovini \\(.*\\)$",
"^Intestinal spirocha?etosis$",
"^Treatment of Rodent Ulcer$",
"(?i)^\\W*Cloud Computing\\W*$",
"^Compendio mathematico : en que se contienen todas las materias mas principales de las Ciencias que tratan de la cantidad$",
"^Free Communications, Poster Presentations: Session [A-F]$",
"^“The Historical Aspects? of Quackery\\.?”$",
"^A designated centre for people with disabilities operated by St John of God Community Services (Limited|Ltd), Louth$",
"^P(er|re)-Mile Premiums for Auto Insurance\\.?$",
"(?i)^Case Report$",
"^Boletín Informativo$",
"(?i)^Glioblastoma Multiforme$",
"(?i)^Nuevos táxones animales descritos en la península Ibérica y Macaronesia desde 1994 \\(.*\\)$",
"^Zaměstnanecké výhody$",
"(?i)^The Economics of Terrorism and Counter-Terrorism: A Survey \\(Part .*\\)$",
"(?i)^Carotid body tumours?\\.?$",
"(?i)^\\[Españoles en Francia : La condición Emigrante.*\\]$",
"^Avant-propos$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Head(s)? and Capital(s)?$",
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Bases?$",
"(?i)^PUBLIC HEALTH VERSUS THE STATE$",
"^Viñetas de Cortázar$",
"(?i)^Search for heavy neutrinos and W(\\[|_|\\(|_\\{|-)?R(\\]|\\)|\\})? bosons with right-handed couplings in a left-right symmetric model in pp collisions at.*TeV(\\.)?$",
"(?i)^Measurement of the pseudorapidity and centrality dependence of the transverse energy density in Pb(-?)Pb collisions at.*tev(\\.?)$",
"(?i)^Search for resonances decaying into top-quark pairs using fully hadronic decays in pp collisions with ATLAS at.*TeV$",
"(?i)^Search for neutral minimal supersymmetric standard model Higgs bosons decaying to tau pairs in pp collisions at.*tev$",
"(?i)^Relatório de Estágio (de|em) Angiologia e Cirurgia Vascular$",
"^Aus der AGMB$",
"^Znanstveno-stručni prilozi$",
"(?i)^Zhodnocení finanční situace podniku a návrhy na zlepšení$",
"(?i)^Evaluation of the Financial Situation in the Firm and Proposals to its Improvement$",
"(?i)^Hodnocení finanční situace podniku a návrhy na její zlepšení$",
"^Finanční analýza podniku$",
"^Financial analysis( of business)?$",
"(?i)^Textbook of Gyn(a)?(Æ)?(e)?cology$",
"^Jikken nihon shūshinsho$",
"(?i)^CORONER('|s)(s|') INQUESTS$",
"(?i)^(Μελέτη παραγόντων )?risk management( για ανάπτυξη και εφαρμογή ενός πληροφοριακού συστήματος| και ανάπτυξη συστήματος)?$",
"(?i)^Consultants' contract(s)?$",
"(?i)^Upute autorima$",
"(?i)^Bijdrage tot de Kennis van den Godsdienst der Dajaks van Lan(d|f)ak en Tajan$",
"^Joshi shin kokubun$",
"^Kōtō shōgaku dokuhon nōson'yō$",
"^Jinjō shōgaku shōka$",
"^Shōgaku shūjichō$",
"^Nihon joshi dokuhon$",
"^Joshi shin dokuhon$",
"^Chūtō kanbun dokuhon$",
"^Wabun dokuhon$",
"(?i)^(Analysis of economy selected village or town|Rozbor hospodaření vybrané obce či města)$",
"(?i)^cardiac rehabilitation$",
"(?i)^Analytical summary$",
"^Thesaurus resolutionum Sacrae Congregationis Concilii$",
"(?i)^Sumario analítico(\\s{1})?(Analitic summary)?$",
"^Prikazi i osvrti$",
"^Rodinný dům s provozovnou$",
"^Family house with an establishment$",
"^Shinsei chūtō shin kokugun$",
"^Pulmonary alveolar proteinosis(\\.?)$",
"^Shinshū kanbun$",
"^Viñeta(s?) de Rodríguez$",
"(?i)^RUBRIKA UREDNIKA$",
"^A Matching Model of the Academic Publication Market$",
"^Yōgaku kōyō$",
"^Internetový marketing$",
"^Internet marketing$",
"^Chūtō kokugo dokuhon$",
"^Kokugo dokuhon$",
"^Antibiotic Cover for Dental Extraction(s?)$",
"^Strategie podniku$",
"^Strategy of an Enterprise$",
"(?i)^respiratory disease(s?)(\\.?)$",
"^Award(s?) for Gallantry in Civil Defence$",
"^Podniková kultura$",
"^Corporate Culture$",
"^Severe hyponatraemia in hospital inpatient(s?)(\\.?)$",
"^Pracovní motivace$",
"^Work Motivation$",
"^Kaitei kōtō jogaku dokuhon$",
"^Konsolidovaná účetní závěrka$",
"^Consolidated Financial Statements$",
"(?i)^intracranial tumour(s?)$",
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"^Pay-beds in N(\\.?)H(\\.?)S(\\.?) Hospitals$",
"(?i)^news and events$",
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"^Posouzení informačního systému firmy a návrh změn$",
"^Information System Assessment and Proposal for ICT Modification$",
"^Stresové zatížení pracovníků ve vybrané profesi$",
"^Stress load in a specific job$",
"^Sunday: Poster Sessions, Pt.*$",
"^Monday: Poster Sessions, Pt.*$",
"^Wednesday: Poster Sessions, Pt.*",
"^Tuesday: Poster Sessions, Pt.*$",
"^Analýza reklamy$",
"^Analysis of advertising$",
"^Shōgaku shūshinsho$",
"^Shōgaku sansū$",
"^Shintei joshi kokubun$",
"^Taishō joshi kokubun dokuhon$",
"^Joshi kokubun$",
"^Účetní uzávěrka a účetní závěrka v ČR$",
"(?i)^The \"?Causes\"? of Cancer$",
"^Normas para la publicación de artículos$",
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"^Editor(’|s)(s|’) letter$",
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"^Kōtō shōgaku shūshinsho jidōyō$",
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"^(Theory of the flow of action currents in isolated myelinated nerve fibers).*$",
"^Préface$",
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"^Polyfunkční dům$",
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"^Podnikatelský plán$",
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"(?i)^Business Plan$",
"^Oceňování nemovitostí$",
"^Marketingová komunikace$",
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"^Sumario Analítico$",
"^Riječ uredništva$",
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"^(Starobosanski nadpisi).*$",
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"(?i)^Content(s?)$",
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"^Retrato de una mujer$",
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"^Kōtō shōgaku dokuhon$",
"^Shotōka kokugo$",
"^Shōgaku dokuhon$",
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"^(Measurement of the spin\\-dependent structure function).*",
"(?i)^.*authors['’′]? reply\\.?$",
"(?i)^.*authors['’′]? response\\.?$",
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465
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View File

@ -0,0 +1,465 @@
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"(?i)^Mind the gap\\!?\\:?$",
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"(?i)^Acknowledgement to Referees$",
"(?i)^Behçet's disease\\.?$",
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"(?i)^Screening for abdominal aortic aneurysms?\\.?$",
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"(?i)^Bijdrage tot de Kennis van den Godsdienst der Dajaks van Lan(d|f)ak en Tajan$",
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"(?i)^(Analysis of economy selected village or town|Rozbor hospodaření vybrané obce či města)$",
"(?i)^cardiac rehabilitation$",
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"(?i)^Sumario analítico(\\s{1})?(Analitic summary)?$",
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"^Internetový marketing$",
"^Internet marketing$",
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"^Kokugo dokuhon$",
"^Antibiotic Cover for Dental Extraction(s?)$",
"^Strategie podniku$",
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"(?i)^respiratory disease(s?)(\\.?)$",
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"^Consolidated Financial Statements$",
"(?i)^intracranial tumour(s?)$",
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"^Housing Market Dynamics(\\:|\\.) On the Contribution of Income Shocks and Credit Constraint(s?)$",
"^\\[Funciones auxiliares de la música en Radio París,.*\\]$",
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"^Pay-beds in N(\\.?)H(\\.?)S(\\.?) Hospitals$",
"(?i)^news and events$",
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"^Stress load in a specific job$",
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"^Monday: Poster Sessions, Pt.*$",
"^Wednesday: Poster Sessions, Pt.*",
"^Tuesday: Poster Sessions, Pt.*$",
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"^Analysis of advertising$",
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"^Joshi kokubun$",
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"^Marketing communication$",
"^Sumario Analítico$",
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"^Riječ urednika$",
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"(?i)^Inhalt$",
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"^Retrato de una mujer$",
"^Retrato de un hombre$",
"^Kōtō shōgaku dokuhon$",
"^Shotōka kokugo$",
"^Shōgaku dokuhon$",
"^Jinjō shōgaku kokugo dokuhon$",
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"^PRZEGLĄD PIŚMIENNICTWA$",
"(?i)^Presentación$",
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"(?i)^Tabl?e of contents$",
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"(?i)^Editorial \\(English\\)$",
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"^(\\[Eksliibris Aleksandr).*\\]$",
"^(\\[Eksliibris Aleksandr).*$",
"^(Eksliibris Aleksandr).*$",
"^(Kiri A\\. de Vignolles).*$",
"^(2 kirja Karl Morgensternile).*$",
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"^(Kiri tundmatule).*$",
"^(Kiri Jenaer Allgemeine Literaturzeitung toimetusele).*$",
"^(Eksliibris Nikolai Birukovile).*$",
"^(Eksliibris Nikolai Issakovile).*$",
"^(WHP Cruise Summary Information of section).*$",
"^(Measurement of the top quark\\-pair production cross section with ATLAS in pp collisions at).*$",
"^(Measurement of the spin\\-dependent structure function).*",
"(?i)^.*authors['’′]? reply\\.?$",
"(?i)^.*authors['’′]? response\\.?$",
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