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the param map has been updated: now it accepts string parameters

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miconis 2019-11-21 09:37:56 +01:00
parent 79e62787cf
commit 40808200f0
41 changed files with 242 additions and 282 deletions
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10
dnet-dedup-test/src/test/java/eu/dnetlib/pace/DedupLocalTest.java
View File

@ -106,4 +106,14 @@ public class DedupLocalTest extends DedupTestUtils {
}
@Ignore
@Test
public void parseJSONEntityTest(){
String jsonEntity = "{\"dateoftransformation\":\"2018-09-19\",\"originalId\":[\"doajarticles::Sociedade_Brasileira_de_Reumatologia\"],\"collectedfrom\":[{\"value\":\"DOAJ-Articles\",\"key\":\"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824\"}],\"organization\":{\"metadata\":{\"eclegalbody\":{\"value\":\"false\"},\"eclegalperson\":{\"value\":\"false\"},\"ecinternationalorganization\":{\"value\":\"false\"},\"legalshortname\":{\"value\":\"Sociedade Brasileira de Reumatologia\"},\"ecresearchorganization\":{\"value\":\"false\"},\"ecnonprofit\":{\"value\":\"false\"},\"ecenterprise\":{\"value\":\"false\"},\"ecnutscode\":{\"value\":\"false\"},\"ecinternationalorganizationeurinterests\":{\"value\":\"false\"},\"legalname\":{\"value\":\"Sociedade Brasileira de Reumatologia\"},\"country\":{\"classid\":\"BR\",\"classname\":\"Brazil\",\"schemename\":\"dnet:countries\",\"schemeid\":\"dnet:countries\"},\"echighereducation\":{\"value\":\"false\"},\"ecsmevalidated\":{\"value\":\"false\"}}},\"dateofcollection\":\"2018-09-19\",\"type\":20,\"id\":\"20|doajarticles::0019ba7a22c5bc733c3206bde28ff568\"}";
MapDocument mapDocument = PaceUtils.asMapDocument(config, jsonEntity);
System.out.println("mapDocument = " + mapDocument);
}
}

9
dnet-dedup-test/src/test/java/eu/dnetlib/pace/DedupTestUtils.java
View File

@ -1,14 +1,10 @@
package eu.dnetlib.pace;
import eu.dnetlib.pace.config.DedupConfig;
import eu.dnetlib.pace.model.MapDocument;
import eu.dnetlib.pace.tree.support.TreeNodeDef;
import eu.dnetlib.pace.tree.support.TreeNodeStats;
import eu.dnetlib.support.ConnectedComponent;
import org.apache.spark.api.java.JavaRDD;
import java.util.List;
import java.util.Map;
public abstract class DedupTestUtils {
@ -21,11 +17,6 @@ public abstract class DedupTestUtils {
connectedComponents.foreach(cc -> {
System.out.println(cc);
});
// connectedComponents.foreach(cc -> {
// cc.getDocs().stream().forEach(d -> {
// System.out.println(d.getFieldMap().get("legalname") + " | " + d.getFieldMap().get("legalshortname"));
// });
// });
//print nondeduped
nonDeduplicated.foreach(cc -> {
System.out.println(cc);

10
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/organization.current.conf
View File

@ -68,8 +68,8 @@
"weight": 1.0,
"countIfUndefined": "true",
"params": {
"windowSize": 4,
"threshold": 0.0
"windowSize": "4",
"threshold": "0.0"
}
}
],
@ -88,8 +88,8 @@
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"windowSize": 4,
"threshold": 0.7
"windowSize": "4",
"threshold": "0.7"
}
}
],
@ -108,7 +108,7 @@
"weight": 0.9,
"countIfUndefined": "true",
"params": {
"windowSize": 4
"windowSize": "4"
}
},
{

56
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/config/organization.strict.conf
View File

@ -20,6 +20,49 @@
],
"decisionTree" : {
"start": {
"fields": [
{
"field": "originalId",
"comparator": "containsMatch",
"weight": 1,
"countIfUndefined": "true",
"params": {
"string": "openorgs",
"bool": "XOR",
"caseSensitive": "false"
}
},
{
"field": "originalId",
"comparator": "containsMatch",
"weight": 1,
"countIfUndefined": "true",
"params": {
"string": "corda__h2020",
"bool": "XOR",
"caseSensitive": "false"
}
},
{
"field": "originalId",
"comparator": "containsMatch",
"weight": 1,
"countIfUndefined": "true",
"params": {
"string": "corda_______",
"bool": "XOR",
"caseSensitive": "false"
}
}
],
"threshold": 1.0,
"aggregation": "OR",
"positive": "layer1",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "false"
},
"layer1": {
"fields": [
{
"field": "gridid",
@ -68,8 +111,8 @@
"weight": 1.0,
"countIfUndefined": "true",
"params": {
"windowSize": 4,
"threshold": 0.7
"windowSize": "4",
"threshold": "0.7"
}
}
],
@ -88,8 +131,8 @@
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"windowSize": 4,
"threshold": 0.9
"windowSize": "4",
"threshold": "0.9"
}
}
],
@ -108,7 +151,7 @@
"weight": 0.9,
"countIfUndefined": "true",
"params": {
"windowSize": 4
"windowSize": "4"
}
},
{
@ -132,7 +175,8 @@
{ "name" : "legalshortname", "type" : "String", "path" : "organization/metadata/legalshortname/value"},
{ "name" : "legalname", "type" : "String", "path" : "organization/metadata/legalname/value" },
{ "name" : "websiteurl", "type" : "URL", "path" : "organization/metadata/websiteurl/value" },
{ "name" : "gridid", "type" : "String", "path" : "pid[qualifier#classid = {grid}]/value"}
{ "name" : "gridid", "type" : "String", "path" : "pid[qualifier#classid = {grid}]/value"},
{ "name" : "originalId", "type" : "String", "path" : "id" }
],
"blacklists" : {
"legalname" : []

108
dnet-dedup-test/src/test/resources/eu/dnetlib/pace/examples/organization.to.fix.json
View File

@ -1,100 +1,8 @@
{"dateoftransformation":"2018-09-19","originalId":["doajarticles::Sociedade_Brasileira_de_Reumatologia"],"collectedfrom":[{"value":"DOAJ-Articles","key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824"}],"organization":{"metadata":{"eclegalbody":{"value":"false"},"eclegalperson":{"value":"false"},"ecinternationalorganization":{"value":"false"},"legalshortname":{"value":"Sociedade Brasileira de Reumatologia"},"ecresearchorganization":{"value":"false"},"ecnonprofit":{"value":"false"},"ecenterprise":{"value":"false"},"ecnutscode":{"value":"false"},"ecinternationalorganizationeurinterests":{"value":"false"},"legalname":{"value":"Sociedade Brasileira de Reumatologia"},"country":{"classid":"BR","classname":"Brazil","schemename":"dnet:countries","schemeid":"dnet:countries"},"echighereducation":{"value":"false"},"ecsmevalidated":{"value":"false"}}},"dateofcollection":"2018-09-19","type":20,"id":"20|doajarticles::0019ba7a22c5bc733c3206bde28ff568"}
{"dateoftransformation":"2018-09-19","originalId":["doajarticles::Sociedade_Brasileira_de_Física"],"collectedfrom":[{"value":"DOAJ-Articles","key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824"}],"organization":{"metadata":{"eclegalbody":{"value":"false"},"eclegalperson":{"value":"false"},"ecinternationalorganization":{"value":"false"},"legalshortname":{"value":"Sociedade Brasileira de Física"},"ecresearchorganization":{"value":"false"},"ecnonprofit":{"value":"false"},"ecenterprise":{"value":"false"},"ecnutscode":{"value":"false"},"ecinternationalorganizationeurinterests":{"value":"false"},"legalname":{"value":"Sociedade Brasileira de Física"},"country":{"classid":"BR","classname":"Brazil","schemename":"dnet:countries","schemeid":"dnet:countries"},"echighereducation":{"value":"false"},"ecsmevalidated":{"value":"false"}}},"dateofcollection":"2018-09-19","type":20,"id":"20|doajarticles::0aa0dbb4e641521d10e3d93ab335b7af"}
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2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/AlwaysMatch.java
View File

@ -11,7 +11,7 @@ import java.util.Map;
@ComparatorClass("alwaysMatch")
public class AlwaysMatch extends AbstractComparator {
public AlwaysMatch(final Map<String, Number> params){
public AlwaysMatch(final Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
}

10
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/CityMatch.java
View File

@ -10,9 +10,9 @@ import java.util.Set;
@ComparatorClass("cityMatch")
public class CityMatch extends AbstractComparator {
private Map<String, Number> params;
private Map<String, String> params;
public CityMatch(Map<String, Number> params) {
public CityMatch(Map<String, String> params) {
super(params);
this.params = params;
}
@ -29,8 +29,8 @@ public class CityMatch extends AbstractComparator {
ca = filterAllStopWords(ca);
cb = filterAllStopWords(cb);
Set<String> cities1 = getCities(ca, params.getOrDefault("windowSize", 4).intValue());
Set<String> cities2 = getCities(cb, params.getOrDefault("windowSize", 4).intValue());
Set<String> cities1 = getCities(ca, Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> cities2 = getCities(cb, Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> codes1 = citiesToCodes(cities1);
Set<String> codes2 = citiesToCodes(cities2);
@ -41,7 +41,7 @@ public class CityMatch extends AbstractComparator {
else {
if (codes1.isEmpty() ^ codes2.isEmpty())
return -1; //undefined if one of the two has no cities
return commonElementsPercentage(codes1, codes2) > params.getOrDefault("threshold", 0).intValue() ? 1.0 : 0.0;
return commonElementsPercentage(codes1, codes2) > Integer.parseInt(params.getOrDefault("threshold", "0")) ? 1.0 : 0.0;
}
}
}

57
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/ContainsMatch.java Normal file
View File

@ -0,0 +1,57 @@
package eu.dnetlib.pace.tree;
import eu.dnetlib.pace.config.Config;
import eu.dnetlib.pace.tree.support.AbstractComparator;
import eu.dnetlib.pace.tree.support.ComparatorClass;
import java.util.Map;
/**
* The Class Contains match
*
* @author miconis
* */
@ComparatorClass("containsMatch")
public class ContainsMatch extends AbstractComparator {
private Map<String, String> params;
public ContainsMatch(Map<String, String> params) {
super(params);
this.params = params;
}
@Override
public double distance(final String a, final String b, final Config conf) {
//read parameters
boolean caseSensitive = Boolean.parseBoolean(params.getOrDefault("caseSensitive", "false"));
String string = params.get("string");
String agg = params.get("bool");
String ca = a;
String cb = b;
if (!caseSensitive) {
ca = a.toLowerCase();
cb = b.toLowerCase();
}
switch(agg) {
case "AND":
if(ca.contains(string) && cb.contains(string))
return 1.0;
break;
case "OR":
if(ca.contains(string) || cb.contains(string))
return 1.0;
break;
case "XOR":
if(ca.contains(string) ^ cb.contains(string))
return 1.0;
break;
default:
return 0.0;
}
return 0.0;
}
}

3
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/DoiExactMatch.java
View File

@ -1,6 +1,5 @@
package eu.dnetlib.pace.tree;
import java.util.List;
import java.util.Map;
import eu.dnetlib.pace.model.Field;
@ -16,7 +15,7 @@ public class DoiExactMatch extends ExactMatchIgnoreCase {
public final String PREFIX = "(http:\\/\\/dx\\.doi\\.org\\/)|(doi:)";
public DoiExactMatch(final Map<String, Number> params) {
public DoiExactMatch(final Map<String, String> params) {
super(params);
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/DomainExactMatch.java
View File

@ -10,7 +10,7 @@ import java.util.Map;
@ComparatorClass("domainExactMatch")
public class DomainExactMatch extends ExactMatchIgnoreCase {
public DomainExactMatch(final Map<String, Number> params) {
public DomainExactMatch(final Map<String, String> params) {
super(params);
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/ExactMatch.java
View File

@ -10,7 +10,7 @@ import java.util.Map;
@ComparatorClass("exactMatch")
public class ExactMatch extends AbstractComparator {
public ExactMatch(Map<String, Number> params){
public ExactMatch(Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/ExactMatchIgnoreCase.java
View File

@ -10,7 +10,7 @@ import java.util.Map;
@ComparatorClass("exactMatchIgnoreCase")
public class ExactMatchIgnoreCase extends AbstractComparator {
public ExactMatchIgnoreCase(Map<String, Number> params) {
public ExactMatchIgnoreCase(Map<String, String> params) {
super(params);
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/JaroWinkler.java
View File

@ -11,7 +11,7 @@ import java.util.Map;
@ComparatorClass("jaroWinkler")
public class JaroWinkler extends AbstractComparator {
public JaroWinkler(Map<String, Number> params){
public JaroWinkler(Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
}

12
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/JaroWinklerNormalizedName.java
View File

@ -13,9 +13,9 @@ import java.util.Set;
@ComparatorClass("jaroWinklerNormalizedName")
public class JaroWinklerNormalizedName extends AbstractComparator {
private Map<String, Number> params;
private Map<String, String> params;
public JaroWinklerNormalizedName(Map<String, Number> params){
public JaroWinklerNormalizedName(Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
this.params = params;
}
@ -39,11 +39,11 @@ public class JaroWinklerNormalizedName extends AbstractComparator {
ca = filterAllStopWords(ca);
cb = filterAllStopWords(cb);
Set<String> keywords1 = getKeywords(ca, conf.translationMap(), params.getOrDefault("windowSize", 4).intValue());
Set<String> keywords2 = getKeywords(cb, conf.translationMap(), params.getOrDefault("windowSize", 4).intValue());
Set<String> keywords1 = getKeywords(ca, conf.translationMap(), Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> keywords2 = getKeywords(cb, conf.translationMap(), Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> cities1 = getCities(ca, params.getOrDefault("windowSize", 4).intValue());
Set<String> cities2 = getCities(cb, params.getOrDefault("windowSize", 4).intValue());
Set<String> cities1 = getCities(ca, Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> cities2 = getCities(cb, Integer.parseInt(params.getOrDefault("windowSize", "4")));
ca = removeKeywords(ca, keywords1);
ca = removeKeywords(ca, cities1);

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/JaroWinklerTitle.java
View File

@ -12,7 +12,7 @@ import java.util.Map;
@ComparatorClass("jaroWinklerTitle")
public class JaroWinklerTitle extends AbstractComparator {
public JaroWinklerTitle(Map<String, Number> params){
public JaroWinklerTitle(Map<String, String> params){
super(params, new com.wcohen.ss.JaroWinkler());
}

10
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/KeywordMatch.java
View File

@ -10,9 +10,9 @@ import java.util.Set;
@ComparatorClass("keywordMatch")
public class KeywordMatch extends AbstractComparator {
Map<String, Number> params;
Map<String, String> params;
public KeywordMatch(Map<String, Number> params) {
public KeywordMatch(Map<String, String> params) {
super(params);
this.params = params;
}
@ -29,8 +29,8 @@ public class KeywordMatch extends AbstractComparator {
ca = filterAllStopWords(ca);
cb = filterAllStopWords(cb);
Set<String> keywords1 = getKeywords(ca, conf.translationMap(), params.getOrDefault("windowSize", 4).intValue());
Set<String> keywords2 = getKeywords(cb, conf.translationMap(), params.getOrDefault("windowSize", 4).intValue());
Set<String> keywords1 = getKeywords(ca, conf.translationMap(), Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> keywords2 = getKeywords(cb, conf.translationMap(), Integer.parseInt(params.getOrDefault("windowSize", "4")));
Set<String> codes1 = toCodes(keywords1, conf.translationMap());
Set<String> codes2 = toCodes(keywords2, conf.translationMap());
@ -41,7 +41,7 @@ public class KeywordMatch extends AbstractComparator {
else {
if (codes1.isEmpty() ^ codes2.isEmpty())
return -1; //undefined if one of the two has no keywords
return commonElementsPercentage(codes1, codes2) > params.getOrDefault("threshold", 0).intValue() ? 1.0 : 0.0;
return commonElementsPercentage(codes1, codes2) > Double.parseDouble(params.getOrDefault("threshold", "0.0")) ? 1.0 : 0.0;
}
}
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/Level2JaroWinkler.java
View File

@ -9,7 +9,7 @@ import java.util.Map;
@ComparatorClass("level2JaroWinkler")
public class Level2JaroWinkler extends AbstractComparator {
public Level2JaroWinkler(Map<String, Number> params){
public Level2JaroWinkler(Map<String, String> params){
super(params, new com.wcohen.ss.Level2JaroWinkler());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/Level2JaroWinklerTitle.java
View File

@ -10,7 +10,7 @@ import java.util.Map;
@ComparatorClass("level2JaroWinklerTitle")
public class Level2JaroWinklerTitle extends AbstractComparator {
public Level2JaroWinklerTitle(Map<String,Number> params){
public Level2JaroWinklerTitle(Map<String,String> params){
super(params, new com.wcohen.ss.Level2JaroWinkler());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/Level2Levenstein.java
View File

@ -9,7 +9,7 @@ import java.util.Map;
@ComparatorClass("level2Levenstein")
public class Level2Levenstein extends AbstractComparator {
public Level2Levenstein(Map<String,Number> params){
public Level2Levenstein(Map<String,String> params){
super(params, new com.wcohen.ss.Level2Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/Levenstein.java
View File

@ -9,7 +9,7 @@ import java.util.Map;
@ComparatorClass("levenstein")
public class Levenstein extends AbstractComparator {
public Levenstein(Map<String,Number> params){
public Levenstein(Map<String,String> params){
super(params, new com.wcohen.ss.Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/LevensteinTitle.java
View File

@ -15,7 +15,7 @@ public class LevensteinTitle extends AbstractComparator {
private static final Log log = LogFactory.getLog(LevensteinTitle.class);
public LevensteinTitle(Map<String,Number> params){
public LevensteinTitle(Map<String,String> params){
super(params, new com.wcohen.ss.Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/LevensteinTitleIgnoreVersion.java
View File

@ -14,7 +14,7 @@ import java.util.Map;
@ComparatorClass("levensteinTitleIgnoreVersion")
public class LevensteinTitleIgnoreVersion extends AbstractComparator {
public LevensteinTitleIgnoreVersion(Map<String,Number> params){
public LevensteinTitleIgnoreVersion(Map<String,String> params){
super(params, new com.wcohen.ss.Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/MustBeDifferent.java
View File

@ -10,7 +10,7 @@ import java.util.Map;
@ComparatorClass("mustBeDifferent")
public class MustBeDifferent extends AbstractComparator {
public MustBeDifferent(Map<String,Number> params){
public MustBeDifferent(Map<String,String> params){
super(params, new com.wcohen.ss.Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/NullDistanceAlgo.java
View File

@ -14,7 +14,7 @@ import java.util.Map;
@ComparatorClass("null")
public class NullDistanceAlgo implements Comparator {
public NullDistanceAlgo(Map<String, Number> params){
public NullDistanceAlgo(Map<String, String> params){
}
@Override

6
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/PidMatch.java
View File

@ -20,9 +20,9 @@ import java.util.stream.Collectors;
public class PidMatch extends AbstractComparator {
private static final Log log = LogFactory.getLog(PidMatch.class);
private Map<String, Number> params;
private Map<String, String> params;
public PidMatch(final Map<String, Number> params) {
public PidMatch(final Map<String, String> params) {
super(params);
this.params = params;
}
@ -50,7 +50,7 @@ public class PidMatch extends AbstractComparator {
return 0.0;
}
return (double)incommon / (incommon + simDiff) > params.getOrDefault("threshold", 0.5).doubleValue() ? 1 : 0;
return (double)incommon / (incommon + simDiff) > Double.parseDouble(params.getOrDefault("threshold", "0.5")) ? 1 : 0;
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/SizeMatch.java
View File

@ -24,7 +24,7 @@ public class SizeMatch extends AbstractComparator {
* @param params
* the parameters
*/
public SizeMatch(final Map<String, Number> params) {
public SizeMatch(final Map<String, String> params) {
super(params);
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/SortedJaroWinkler.java
View File

@ -12,7 +12,7 @@ import java.util.Map;
@ComparatorClass("sortedJaroWinkler")
public class SortedJaroWinkler extends AbstractSortedComparator {
public SortedJaroWinkler(Map<String,Number> params){
public SortedJaroWinkler(Map<String,String> params){
super(params, new com.wcohen.ss.Levenstein());
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/SortedLevel2JaroWinkler.java
View File

@ -22,7 +22,7 @@ public class SortedLevel2JaroWinkler extends AbstractSortedComparator {
super(weight, new com.wcohen.ss.Level2JaroWinkler());
}
public SortedLevel2JaroWinkler(final Map<String, Number> params){
public SortedLevel2JaroWinkler(final Map<String, String> params){
super(params, new com.wcohen.ss.Level2JaroWinkler());
}

4
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/SubStringLevenstein.java
View File

@ -31,9 +31,9 @@ public class SubStringLevenstein extends AbstractComparator {
super(w, new com.wcohen.ss.Levenstein());
}
public SubStringLevenstein(Map<String, Number> params){
public SubStringLevenstein(Map<String, String> params){
super(params, new com.wcohen.ss.Levenstein());
this.limit = params.get("limit").intValue();
this.limit = Integer.parseInt(params.getOrDefault("limit", "1"));
}
/**

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/TitleVersionMatch.java
View File

@ -17,7 +17,7 @@ import eu.dnetlib.pace.tree.support.ComparatorClass;
@ComparatorClass("titleVersionMatch")
public class TitleVersionMatch extends AbstractComparator {
public TitleVersionMatch(final Map<String, Number> params) {
public TitleVersionMatch(final Map<String, String> params) {
super(params);
}

12
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/UrlMatcher.java
View File

@ -12,19 +12,19 @@ import java.util.Map;
@ComparatorClass("urlMatcher")
public class UrlMatcher extends Levenstein {
private Map<String, Number> params;
private Map<String, String> params;
public UrlMatcher(Map<String, Number> params){
public UrlMatcher(Map<String, String> params){
super(params);
this.params = params;
}
public UrlMatcher(double weight, Map<String, Number> params) {
public UrlMatcher(double weight, Map<String, String> params) {
super(weight);
this.params = params;
}
public void setParams(Map<String, Number> params) {
public void setParams(Map<String, String> params) {
this.params = params;
}
@ -37,8 +37,8 @@ public class UrlMatcher extends Levenstein {
return 0.0;
}
Double hostW = params.get("host").doubleValue();
Double pathW = params.get("path").doubleValue();
Double hostW = Double.parseDouble(params.getOrDefault("host", "0.5"));
Double pathW = Double.parseDouble(params.getOrDefault("path", "0.5"));
if (StringUtils.isBlank(urlA.getPath()) || StringUtils.isBlank(urlB.getPath())) {
return hostW * 0.5;

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/YearMatch.java
View File

@ -18,7 +18,7 @@ public class YearMatch extends AbstractComparator {
private int limit = 4;
public YearMatch(final Map<String, Number> params) {
public YearMatch(final Map<String, String> params) {
super(params);
}

6
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/AbstractComparator.java
View File

@ -18,13 +18,13 @@ public abstract class AbstractComparator extends AbstractPaceFunctions implement
/** The weight. */
protected double weight = 0.0;
private Map<String, Number> params;
private Map<String, String> params;
protected AbstractComparator(Map<String, Number> params) {
protected AbstractComparator(Map<String, String> params) {
this.params = params;
}
protected AbstractComparator(Map<String, Number> params, final AbstractStringDistance ssalgo){
protected AbstractComparator(Map<String, String> params, final AbstractStringDistance ssalgo){
this.params = params;
this.weight = 1.0;
this.ssalgo = ssalgo;

4
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/AbstractSortedComparator.java
View File

@ -23,8 +23,8 @@ public abstract class AbstractSortedComparator extends AbstractComparator {
super(weight, ssalgo);
}
protected AbstractSortedComparator(final Map<String, Number> params, final AbstractStringDistance ssalgo){
super(params.get("weight").doubleValue(), ssalgo);
protected AbstractSortedComparator(final Map<String, String> params, final AbstractStringDistance ssalgo){
super(Double.parseDouble(params.get("weight")), ssalgo);
}
@Override

8
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/FieldConf.java
View File

@ -12,7 +12,7 @@ public class FieldConf implements Serializable {
private String field; //name of the field on which apply the comparator
private String comparator; //comparator name
private double weight = 1.0; //weight for the field (to be used in the aggregation)
private Map<String,Number> params; //parameters
private Map<String,String> params; //parameters
private boolean countIfUndefined;
@ -27,7 +27,7 @@ public class FieldConf implements Serializable {
public FieldConf() {
}
public FieldConf(String field, String comparator, double weight, Map<String, Number> params, boolean countIfUndefined) {
public FieldConf(String field, String comparator, double weight, Map<String, String> params, boolean countIfUndefined) {
this.field = field;
this.comparator = comparator;
this.weight = weight;
@ -59,11 +59,11 @@ public class FieldConf implements Serializable {
this.weight = weight;
}
public Map<String, Number> getParams() {
public Map<String, String> getParams() {
return params;
}
public void setParams(Map<String, Number> params) {
public void setParams(Map<String, String> params) {
this.params = params;
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/TreeNodeDef.java
View File

@ -46,7 +46,7 @@ public class TreeNodeDef implements Serializable {
double result = comparator(fieldConf).compare(doc1.getFieldMap().get(fieldConf.getField()), doc2.getFieldMap().get(fieldConf.getField()), conf);
stats.addFieldStats(fieldConf.getComparator() + " on " + fieldConf.getField(), new FieldStats(weight, result, fieldConf.isCountIfUndefined()));
stats.addFieldStats(fieldConf.getComparator() + " on " + fieldConf.getField() + " " + fields.indexOf(fieldConf), new FieldStats(weight, result, fieldConf.isCountIfUndefined()));
}

1
dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/TreeProcessor.java
View File

@ -23,7 +23,6 @@ public class TreeProcessor{
}
public boolean compare(final MapDocument a, final MapDocument b) {
//evaluate the decision tree
return evaluateTree(a, b).getResult() == MatchType.MATCH;
}

2
dnet-pace-core/src/main/java/eu/dnetlib/pace/util/PaceResolver.java
View File

@ -38,7 +38,7 @@ public class PaceResolver implements Serializable {
}
}
public Comparator getComparator(String name, Map<String, Number> params) throws PaceException {
public Comparator getComparator(String name, Map<String, String> params) throws PaceException {
try {
return comparators.get(name).getDeclaredConstructor(Map.class).newInstance(params);
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException | NullPointerException e) {

151
dnet-pace-core/src/test/java/eu/dnetlib/pace/comparators/ComparatorTest.java
View File

@ -2,9 +2,12 @@ package eu.dnetlib.pace.comparators;
import eu.dnetlib.pace.clustering.NGramUtils;
import eu.dnetlib.pace.tree.CityMatch;
import eu.dnetlib.pace.tree.ContainsMatch;
import eu.dnetlib.pace.tree.JaroWinklerNormalizedName;
import eu.dnetlib.pace.config.DedupConfig;
import eu.dnetlib.pace.tree.KeywordMatch;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;
import eu.dnetlib.pace.common.AbstractPaceFunctions;
@ -17,13 +20,13 @@ import static junit.framework.Assert.assertTrue;
public class ComparatorTest extends AbstractPaceFunctions {
private Map<String, Number> params;
private Map<String, String> params;
private DedupConfig conf;
@Before
public void setup() {
params = new HashMap<>();
params.put("weight", 1.0);
params.put("weight", "1.0");
conf = DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/config/organization.current.conf", ComparatorTest.class));
}
@ -34,103 +37,6 @@ public class ComparatorTest extends AbstractPaceFunctions {
System.out.println("utils = " + utils.cleanupForOrdering("University of Pisa"));
}
@Test
public void testJaroWinklerNormalizedName() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Free University of Bozen-Bolzano", "University of the Free State", conf);
System.out.println("result = " + result);
assertEquals(0.0, result);
}
@Test
public void testJaroWinklerNormalizedName2() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("University of New York", "Università di New York", conf);
assertEquals(1.0, result);
}
@Test
public void testJaroWinklerNormalizedName3() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Biblioteca dell'Universita di Bologna", "Università di Bologna", conf);
System.out.println("result = " + result);
assertEquals(0.0, result);
}
@Test
public void testJaroWinklerNormalizedName4() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Universita degli studi di Pisa", "Universita di Pisa", conf);
System.out.println("result = " + result);
assertEquals(1.0, result);
}
@Test
public void testJaroWinklerNormalizedName5() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("RESEARCH PROMOTION FOUNDATION", "IDRYMA PROOTHISIS EREVNAS", conf);
System.out.println("result = " + result);
assertEquals(1.0, result);
}
@Test
public void testJaroWinklerNormalizedName6() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Fonds zur Förderung der wissenschaftlichen Forschung (Austrian Science Fund)", "Fonds zur Förderung der wissenschaftlichen Forschung", conf);
System.out.println("result = " + result);
assertTrue(result > 0.9);
}
@Test
public void testJaroWinklerNormalizedName7() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Polytechnic University of Turin", "POLITECNICO DI TORINO", conf);
System.out.println("result = " + result);
assertTrue(result > 0.9);
}
@Test
public void testJaroWinklerNormalizedName8() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Politechniki Warszawskiej (Warsaw University of Technology)", "Warsaw University of Technology", conf);
System.out.println("result = " + result);
}
@Test
public void testJaroWinklerNormalizedName9() {
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Istanbul Commerce University", "İstanbul Ticarət Universiteti", conf);
System.out.println("result = " + result);
}
@Test
public void testJaroWinklerNormalizedName10(){
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
double result = jaroWinklerNormalizedName.distance("Firenze University Press", "University of Florence", conf);
System.out.println("result = " + result);
}
@Test
public void cityMatchTest() {
final CityMatch cityMatch = new CityMatch(params);
@ -147,6 +53,53 @@ public class ComparatorTest extends AbstractPaceFunctions {
//both names with cities (different)
assertEquals(0.0, cityMatch.distance("Universita di Bologna", "Universita di Torino", conf));
//particular cases
assertEquals(1.0, cityMatch.distance("Free University of Bozen-Bolzano", "Università di Bolzano", conf));
assertEquals(1.0, cityMatch.distance("Politechniki Warszawskiej (Warsaw University of Technology)", "Warsaw University of Technology", conf));
}
// @Test
// public void testJaroWinklerNormalizedName6() {
//
// final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
// double result = jaroWinklerNormalizedName.distance("Fonds zur Förderung der wissenschaftlichen Forschung (Austrian Science Fund)", "Fonds zur Förderung der wissenschaftlichen Forschung", conf);
//
// System.out.println("result = " + result);
// assertTrue(result > 0.9);
//
// }
// @Test
// public void testJaroWinklerNormalizedName10(){
//
// final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
//
// double result = jaroWinklerNormalizedName.distance("Firenze University Press", "University of Florence", conf);
//
// System.out.println("result = " + result);
// }
@Test
public void keywordMatchTest(){
params.put("threshold", "0.4");
final KeywordMatch keywordMatch = new KeywordMatch(params);
assertEquals(1.0, keywordMatch.distance("Biblioteca dell'Universita di Bologna", "Università di Bologna", conf));
assertEquals(1.0, keywordMatch.distance("Universita degli studi di Pisa", "Universita di Pisa", conf));
assertEquals(1.0, keywordMatch.distance("Polytechnic University of Turin", "POLITECNICO DI TORINO", conf));
assertEquals(1.0, keywordMatch.distance("Istanbul Commerce University", "İstanbul Ticarət Universiteti", conf));
}
@Test
public void containsMatchTest(){
params.put("string", "openorgs");
params.put("bool", "XOR");
params.put("caseSensitive", "false");
final ContainsMatch containsMatch = new ContainsMatch(params);
assertEquals(0.0, containsMatch.distance("openorgs", "openorgs", conf));
}

1
dnet-pace-core/src/test/java/eu/dnetlib/pace/config/ConfigTest.java
View File

@ -7,7 +7,6 @@ import java.util.Map;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
public class ConfigTest extends AbstractPaceTest {

4
dnet-pace-core/src/test/java/eu/dnetlib/pace/util/UtilTest.java
View File

@ -8,11 +8,11 @@ import java.util.Map;
public class UtilTest {
Map<String, Number> params;
Map<String, String> params;
@Before
public void setUp(){
params = new HashMap<String, Number>();
params = new HashMap<String, String>();
}
@Test