414 lines
16 KiB
Java
414 lines
16 KiB
Java
package eu.dnetlib.openaire.common;
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import java.io.IOException;
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import java.nio.charset.Charset;
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import java.util.List;
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import java.util.Map;
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import java.util.Objects;
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import java.util.Queue;
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import java.util.concurrent.LinkedBlockingQueue;
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import java.util.function.Function;
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import java.util.stream.Collectors;
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import com.google.common.collect.Lists;
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import com.google.common.escape.Escaper;
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import com.google.common.xml.XmlEscapers;
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import eu.dnetlib.OpenaireExporterConfig;
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import eu.dnetlib.enabling.datasources.common.DsmException;
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import eu.dnetlib.enabling.datasources.common.DsmForbiddenException;
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import eu.dnetlib.enabling.datasources.common.DsmRuntimeException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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import eu.dnetlib.enabling.is.registry.rmi.ISRegistryException;
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import eu.dnetlib.enabling.is.registry.rmi.ISRegistryService;
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import eu.dnetlib.openaire.dsm.dao.utils.IndexDsInfo;
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import eu.dnetlib.openaire.context.Context;
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import eu.dnetlib.openaire.context.ContextMappingUtils;
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import eu.dnetlib.openaire.dsm.domain.ApiDetails;
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import eu.dnetlib.openaire.dsm.domain.DatasourceDetails;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.http.HttpStatus;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.cache.annotation.CacheEvict;
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import org.springframework.cache.annotation.Cacheable;
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import org.springframework.core.io.ClassPathResource;
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import org.springframework.scheduling.annotation.Scheduled;
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import org.springframework.stereotype.Component;
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import static eu.dnetlib.openaire.dsm.dao.utils.DsmMappingUtils.asRepositoryInterfce;
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import static eu.dnetlib.openaire.dsm.dao.utils.DsmMappingUtils.asRepositoryProfile;
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import static eu.dnetlib.openaire.common.Utils.escape;
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/**
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* Created by claudio on 20/10/2016.
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*/
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@Component
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public class ISClientImpl implements ISClient {
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private static final Log log = LogFactory.getLog(ISClientImpl.class);
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@Autowired
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private OpenaireExporterConfig config;
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@Autowired
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private ISLookUpService isLookUpService;
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@Autowired
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private ISRegistryService isRegistryService;
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@Autowired
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private OperationManager operationManager;
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@Override
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@Cacheable("indexdsinfo-cache")
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public IndexDsInfo calculateCurrentIndexDsInfo() throws DsmException {
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log.warn("calculateCurrentIndexDsInfo(): not using cache");
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final String[] arr;
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try {
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arr = _isLookUp(_getQuery(config.getFindIndexDsInfo())).split("@@@");
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return new IndexDsInfo(
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_isLookUp(_getQuery(config.getFindSolrIndexUrl())),
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arr[0].trim(), arr[1].trim(), arr[2].trim());
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} catch (IOException | ISLookUpException e) {
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throw new DsmException("unable fetch index DS information from IS");
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}
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}
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@Override
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@Cacheable("objectstoreid-cache")
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public String getObjectStoreId(final String dsId) throws DsmException {
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log.warn(String.format("getObjectStoreId(%s): not using cache", dsId));
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try {
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final String xqueryTemplate = _getQuery(config.getFindObjectStore());
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return _isLookUp(String.format(xqueryTemplate, dsId));
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} catch (IOException | ISLookUpException e) {
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throw new DsmException("unble to find objectstore for ds " + dsId);
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}
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}
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@Override
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@Cacheable("context-cache-funder")
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public Map<String, Context> getFunderContextMap() throws IOException {
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return _processContext(_getQuery(config.getFindFunderContexts()));
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}
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@Override
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@Cacheable("context-cache-community")
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public Map<String, Context> getCommunityContextMap() throws IOException {
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return _processContext(_getQuery(config.getFindCommunityContexts()));
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}
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@Override
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@Cacheable("context-cache")
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public Map<String, Context> getContextMap(final List<String> type) throws IOException {
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if (Objects.isNull(type) || type.isEmpty()) {
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return _processContext(_getQuery(config.getFindContextProfiles()));
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} else {
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final String xqueryTemplate = _getQuery(config.getFindContextProfilesByType());
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final String xquery = String.format(xqueryTemplate, type.stream()
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.map(t -> String.format("./RESOURCE_PROFILE/BODY/CONFIGURATION/context/@type = '%s'", t))
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.collect(Collectors.joining(" or ")));
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return _processContext(xquery);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void updateContextParam(final String id, final String name, final String value) {
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try {
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_quickSeachProfile(getXQuery(id, name, value));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update context param [id: %s, name: %s, value: %s]", id, name, value), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void updateContextAttribute(final String id, final String name, final String value) {
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final Escaper esc = XmlEscapers.xmlAttributeEscaper();
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try {
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_quickSeachProfile(String.format(
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"update value collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context[./@id = '%s']/@%s with '%s'", id, name, escape(esc, value)));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update context attribute [id: %s, name: %s, data: %s]", id, name, value), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void addConcept(final String id, final String categoryId, final String data) {
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try {
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_quickSeachProfile(String.format(
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"update insert %s into collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context[./@id = '%s']/category[./@id = '%s']", data, id, categoryId));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable add concept [id: %s, categoryId: %s, data: %s]", id, categoryId, data), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void removeConcept(final String id, final String categoryId, final String conceptId) {
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try {
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_quickSeachProfile(String.format(
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"for $concept in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context[./@id = '%s']" +
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"/category[./@id = '%s']/concept[./@id = '%s'] " +
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"return update delete $concept", id, categoryId, conceptId));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable remove concept [id: %s, categoryId: %s, conceptId: %s]", id, categoryId, conceptId), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-community", "context-cache-funder"}, allEntries = true)
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public void updateConceptAttribute(String id, String name, String value) {
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final Escaper esc = XmlEscapers.xmlAttributeEscaper();
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try {
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_quickSeachProfile(String.format(
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"update value collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context/category/concept[./@id = '%s']/@%s with '%s'", id, name, escape(esc, value)));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update concept attribute [id: %s, name: %s, value: %s]", id, name, value), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void updateConceptParam(String id, String name, String value) {
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try {
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_quickSeachProfile(getConceptXQuery(id, name, value));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update concept param [id: %s, name: %s, value: %s]", id, name, value), e);
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}
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}
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@Override
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@CacheEvict(value = { "context-cache", "context-cache-funder"}, allEntries = true)
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public void updateConceptParamNoEscape(String id, String name, String value) {
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try {
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_quickSeachProfile(getConceptXQueryNoEscape(id, name, value));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update concept param [id: %s, name: %s, value: %s]", id, name, value), e);
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}
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}
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@Override
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public void updateDatasourceFields(final String dsId, final Map<String, String> changes) {
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operationManager.addOperation(() -> {
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Thread.currentThread().setName("update-ds:" + dsId);
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changes.forEach((xpath, value) -> {
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try {
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_isLookUp(String.format(
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"for $x in collection('/db/DRIVER/RepositoryServiceResources/RepositoryServiceResourceType')\n" +
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"where $x/RESOURCE_PROFILE/BODY/CONFIGURATION/DATASOURCE_ORIGINAL_ID[@provenance='OPENAIRE']/text() = '%s' \n" +
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"return update value $x%s with '%s'", dsId, xpath, value));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update datasource fields [id: %s, changes: %s]", dsId, changes), e);
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}
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});
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});
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}
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@Override
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public void addAPIAttribute(final String dsId, final String apiId, final Map<String, String> changes) {
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operationManager.addOperation(() -> {
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Thread.currentThread().setName("update-api:" + dsId);
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changes.forEach((xpath, value) -> {
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try {
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final String attribute = StringUtils.substringAfter(xpath, "@");
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final String parentElement = StringUtils.substringBeforeLast(xpath, "/");
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_isLookUp(String.format(
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"let $x:=/RESOURCE_PROFILE/BODY/CONFIGURATION/DATASOURCE_ORIGINAL_ID[@provenance='OPENAIRE' and ./text() = '%s']\n" +
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"return update insert attribute %s {'%s'} into $x/..//INTERFACE[./@id = '%s']%s",
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dsId, attribute, value, apiId, parentElement));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable add API attribute [dsId: %s, apiId: %s, changes: %s]", dsId, apiId, changes), e);
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}
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});
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});
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}
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@Override
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public void updateAPIField(final String dsId, final String apiId, final Map<String, String> changes) {
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operationManager.addOperation(() -> {
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Thread.currentThread().setName("update-api:" + dsId);
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changes.forEach((xpath, value) -> {
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try {
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_isLookUp(String.format(
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"let $x:=/RESOURCE_PROFILE/BODY/CONFIGURATION/DATASOURCE_ORIGINAL_ID[@provenance='OPENAIRE' and ./text() = '%s']\n" +
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"return update value $x/..//INTERFACE[./@id = '%s']%s with '%s'",
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dsId, apiId, xpath, value));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable update API fields [dsId: %s, apiId: %s, changes: %s]", dsId, apiId, changes), e);
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}
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});
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});
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}
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@Override
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public void registerDS(final DatasourceDetails d) {
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operationManager.addOperation(() -> {
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Thread.currentThread().setName("save-ds:" + d.getId());
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try {
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final String id = isRegistryService.registerProfile(asRepositoryProfile(d));
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log.debug(String.format("registered DS profile %s", id));
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} catch (ISRegistryException e) {
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throw new DsmRuntimeException("unable to register DS profile: " + d.getId(), e);
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}
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});
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}
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@Override
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public void registerAPI(final ApiDetails api) {
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operationManager.addOperation(() -> {
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Thread.currentThread().setName("save-api:" + api.getId());
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try {
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final String dsId = api.getDatasource();
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final String iface = asRepositoryInterfce(api);
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_isLookUp(String.format(
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"let $x:=/RESOURCE_PROFILE/BODY/CONFIGURATION/DATASOURCE_ORIGINAL_ID[@provenance='OPENAIRE' and ./text() = '%s']\n" +
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"return update insert %s into $x/../INTERFACES", dsId, iface));
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log.debug(String.format("registered API %s", api.getId()));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException("unable to register API: " + api.getId(), e);
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}
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});
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}
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@Override
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public void removeAPI(final String apiId) throws DsmForbiddenException {
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try {
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final List<String> metaWorkflows = _quickSeachProfile(String.format(
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"distinct-values(for $x in collection('/db/DRIVER/MetaWorkflowDSResources/MetaWorkflowDSResourceType')\n" +
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"where $x/RESOURCE_PROFILE/BODY/DATAPROVIDER[./@interface = '%s']\n" +
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"return $x/RESOURCE_PROFILE/BODY/DATAPROVIDER/@id/string())", apiId));
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if (!metaWorkflows.isEmpty()) {
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throw new DsmForbiddenException(
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HttpStatus.SC_FORBIDDEN,
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String.format("cannot remove api '%s', it has workflows associated", apiId));
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}
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isLookUpService.quickSearchProfile(String.format(
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" update delete /RESOURCE_PROFILE/BODY/CONFIGURATION/INTERFACES/INTERFACE[./@id = '%s']", apiId));
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log.info(String.format("deleted API %s", apiId));
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException(String.format("unable to remove API %s", apiId), e);
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}
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}
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/// HELPERS
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private String getXQuery(final String id, final String name, final String value) {
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final Escaper esc = XmlEscapers.xmlContentEscaper();
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if (StringUtils.isNotBlank(value)) {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context[./@id = '%s']/param[./@name = '%s'] with <param name='%s'>%s</param>", id, name, name,
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escape(esc, value));
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} else {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')" +
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"/RESOURCE_PROFILE/BODY/CONFIGURATION/context[./@id = '%s']/param[./@name = '%s'] with <param name='%s'/>", id, name, name);
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}
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}
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private String getConceptXQuery(final String id, final String name, final String value) {
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final Escaper esc = XmlEscapers.xmlContentEscaper();
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if (StringUtils.isNotBlank(value)) {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')//" +
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"concept[./@id = '%s']/param[./@name = '%s'] with <param name='%s'>%s</param>", id, name, name,
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escape(esc, value));
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} else {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')//concept[./@id = '%s']/param[./@name = '%s'] with <param name='%s'/>", id, name, name);
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}
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}
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private String getConceptXQueryNoEscape(final String id, final String name, final String value) {
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if (StringUtils.isNotBlank(value)) {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')//" +
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"concept[./@id = '%s']/param[./@name = '%s'] with <param name='%s'>%s</param>", id, name, name,
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value);
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} else {
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return String.format(
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"update replace collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')//concept[./@id = '%s']/param[./@name = '%s'] with <param name='%s'/>", id, name, name);
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}
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}
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private Map<String, Context> _processContext(final String xquery) throws IOException {
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return _processContext(new LinkedBlockingQueue<>(), xquery);
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}
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private Map<String, Context> _processContext(final Queue<Throwable> errors, final String xquery) throws IOException {
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try {
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return getContextProfiles(errors, xquery).stream()
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.filter(StringUtils::isNotBlank)
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.map(s -> ContextMappingUtils.parseContext(s, errors))
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.collect(Collectors.toMap(
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Context::getId,
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Function.identity(),
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(c1, c2) -> {
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log.warn(String.format("found duplicate context profile '%s'", c1.getId()));
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return c1;
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}));
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} finally {
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if (!errors.isEmpty()) {
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log.error(errors);
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errors.forEach(Throwable::printStackTrace);
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}
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}
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}
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private List<String> getContextProfiles(final Queue<Throwable> errors, final String xquery) throws IOException {
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log.warn("getContextProfiles(): not using cache");
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try {
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return _quickSeachProfile(xquery);
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} catch (ISLookUpException e) {
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throw new DsmRuntimeException("unable to get context profiles", e);
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}
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}
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private String _getQuery(final ClassPathResource resource) throws IOException {
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return IOUtils.toString(resource.getInputStream(), Charset.defaultCharset());
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}
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private String _isLookUp(final String xquery) throws ISLookUpException {
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log.debug(String.format("running xquery:\n%s", xquery));
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//log.debug(String.format("query result: %s", res));
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return isLookUpService.getResourceProfileByQuery(xquery);
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}
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private List<String> _quickSeachProfile(final String xquery) throws ISLookUpException {
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final List<String> res = Lists.newArrayList();
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log.debug(String.format("running xquery:\n%s", xquery));
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final List<String> list = isLookUpService.quickSearchProfile(xquery);
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if (list != null) {
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res.addAll(list);
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}
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log.debug(String.format("query result size: %s", res.size()));
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return res;
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}
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@CacheEvict(cacheNames = { "context-cache", "indexdsinfo-cache", "objectstoreid-cache" }, allEntries = true)
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@Scheduled(fixedDelayString = "${openaire.exporter.cache.ttl}")
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public void dropCache() {
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log.debug("dropped dsManager IS cache");
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}
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}
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