dnet-applications/apps/dhp-mdstore-manager/src/main/java/eu/dnetlib/data/mdstore/manager/utils/DatabaseUtils.java

201 lines
7.2 KiB
Java

package eu.dnetlib.data.mdstore.manager.utils;
import java.util.Date;
import java.util.HashSet;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import javax.transaction.Transactional;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.jdbc.core.JdbcTemplate;
import org.springframework.stereotype.Service;
import eu.dnetlib.data.mdstore.manager.exceptions.MDStoreManagerException;
import eu.dnetlib.data.mdstore.manager.repository.MDStoreCurrentVersionRepository;
import eu.dnetlib.data.mdstore.manager.repository.MDStoreRepository;
import eu.dnetlib.data.mdstore.manager.repository.MDStoreVersionRepository;
import eu.dnetlib.data.mdstore.manager.repository.MDStoreWithInfoRepository;
import eu.dnetlib.dhp.schema.mdstore.MDStore;
import eu.dnetlib.dhp.schema.mdstore.MDStoreCurrentVersion;
import eu.dnetlib.dhp.schema.mdstore.MDStoreVersion;
import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
@Service
public class DatabaseUtils {
@Autowired
private MDStoreRepository mdstoreRepository;
@Autowired
private MDStoreVersionRepository mdstoreVersionRepository;
@Autowired
private MDStoreCurrentVersionRepository mdstoreCurrentVersionRepository;
@Autowired
private MDStoreWithInfoRepository mdstoreWithInfoRepository;
@Autowired
private JdbcTemplate jdbcTemplate;
@Value("${dhp.mdstore-manager.hdfs.base-path}")
private String hdfsBasePath;
private static final Logger log = LoggerFactory.getLogger(DatabaseUtils.class);
public Iterable<MDStoreWithInfo> listMdStores() {
return mdstoreWithInfoRepository.findAll();
}
public List<String> listMdStoreIDs() {
return mdstoreRepository.findAll().stream().map(MDStore::getId).collect(Collectors.toList());
}
public long countMdStores() {
return mdstoreRepository.count();
}
public Iterable<MDStoreVersion> listVersions(final String mdId) {
return mdstoreVersionRepository.findByMdstore(mdId);
}
public List<String> listExpiredVersions() {
return jdbcTemplate
.queryForList("select v.id from mdstore_versions v left outer join mdstore_current_versions cv on (v.id = cv.current_version) where v.writing = false and v.readcount = 0 and cv.mdstore is null;", String.class);
}
public MDStoreWithInfo findMdStore(final String mdId) throws MDStoreManagerException {
return mdstoreWithInfoRepository.findById(mdId).orElseThrow(() -> new MDStoreManagerException("Missing mdstore: " + mdId));
}
public MDStoreVersion findVersion(final String versionId) throws MDStoreManagerException {
return mdstoreVersionRepository.findById(versionId).orElseThrow(() -> new MDStoreManagerException("Missing mdstore version: " + versionId));
}
@Transactional
public String createMDStore(final String format,
final String layout,
final String interpretation,
final String dsName,
final String dsId,
final String apiId) {
final MDStore md = MDStore.newInstance(format, layout, interpretation, dsName, dsId, apiId, hdfsBasePath);
mdstoreRepository.save(md);
final MDStoreVersion v = MDStoreVersion.newInstance(md.getId(), false, hdfsBasePath);
v.setLastUpdate(new Date());
mdstoreVersionRepository.save(v);
mdstoreCurrentVersionRepository.save(MDStoreCurrentVersion.newInstance(v));
return md.getId();
}
@Transactional
public String deleteMdStore(final String mdId) throws MDStoreManagerException {
final Optional<MDStore> md = mdstoreRepository.findById(mdId);
if (!md.isPresent()) {
log.error("MDStore not found: " + mdId);
throw new MDStoreManagerException("MDStore not found: " + mdId);
}
if (mdstoreVersionRepository.countByMdstoreAndReadCountGreaterThan(mdId, 0) > 0) {
log.error("Read transactions found on mdstore: " + mdId);
throw new MDStoreManagerException("Read transactions found on mdstore: " + mdId);
}
if (mdstoreVersionRepository.countByMdstoreAndWriting(mdId, true) > 0) {
log.error("Write transactions found on mdstore: " + mdId);
throw new MDStoreManagerException("Write transactions found on mdstore: " + mdId);
}
mdstoreCurrentVersionRepository.deleteById(mdId);
mdstoreVersionRepository.deleteByMdstore(mdId);
mdstoreRepository.deleteById(mdId);
return md.get().getHdfsPath();
}
@Transactional
public MDStoreVersion startReading(final String mdId) throws MDStoreManagerException {
final MDStoreCurrentVersion cv =
mdstoreCurrentVersionRepository.findById(mdId).orElseThrow(() -> new MDStoreManagerException("Missing mdstore: " + mdId));
final MDStoreVersion v = mdstoreVersionRepository.findById(cv.getCurrentVersion())
.orElseThrow(() -> new MDStoreManagerException("Missing version: " + cv.getCurrentVersion()));
v.setReadCount(v.getReadCount() + 1);
mdstoreVersionRepository.save(v);
return v;
}
@Transactional
public MDStoreVersion endReading(final String versionId) throws MDStoreManagerException {
final MDStoreVersion v = mdstoreVersionRepository.findById(versionId).orElseThrow(() -> new MDStoreManagerException("Version not found"));
v.setReadCount(Math.max(0, v.getReadCount() - 1));
return v;
}
@Transactional
public MDStoreVersion resetReading(final String versionId) throws MDStoreManagerException {
final MDStoreVersion v = mdstoreVersionRepository.findById(versionId).orElseThrow(() -> new MDStoreManagerException("Version not found"));
v.setReadCount(0);
return v;
}
@Transactional
public MDStoreVersion prepareMdStoreVersion(final String mdId) {
final MDStoreVersion v = MDStoreVersion.newInstance(mdId, true, hdfsBasePath);
mdstoreVersionRepository.save(v);
return v;
}
@Transactional
public MDStoreVersion commitMdStoreVersion(final String versionId, final long size) throws MDStoreManagerException {
final MDStoreVersion v = mdstoreVersionRepository.findById(versionId).orElseThrow(() -> new MDStoreManagerException("Invalid version: " + versionId));
mdstoreCurrentVersionRepository.save(MDStoreCurrentVersion.newInstance(v));
v.setWriting(false);
v.setSize(size);
v.setLastUpdate(new Date());
mdstoreVersionRepository.save(v);
return v;
}
@Transactional
public String deleteMdStoreVersion(final String versionId, final boolean force) throws MDStoreManagerException {
final MDStoreVersion v = mdstoreVersionRepository.findById(versionId).orElseThrow(() -> new MDStoreManagerException("Version not found"));
if (mdstoreCurrentVersionRepository
.countByCurrentVersion(versionId) > 0) {
throw new MDStoreManagerException("I cannot delete this version because it is the current version");
}
if (!force) {
if (v.isWriting()) { throw new MDStoreManagerException("I cannot delete this version because it is in write mode"); }
if (v.getReadCount() > 0) { throw new MDStoreManagerException("I cannot delete this version because it is in read mode"); }
}
mdstoreVersionRepository.delete(v);
return v.getHdfsPath();
}
public Set<String> listValidHdfsPaths() {
return new HashSet<>(jdbcTemplate
.queryForList(" select hdfs_path from mdstores union all select hdfs_path from mdstore_versions", String.class));
}
public String getHdfsBasePath() {
return hdfsBasePath;
}
public void setHdfsBasePath(final String hdfsBasePath) {
this.hdfsBasePath = hdfsBasePath;
}
}