You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
692 lines
27 KiB
Java
692 lines
27 KiB
Java
package eu.dnetlib.organizations.utils;
|
|
|
|
import java.time.OffsetDateTime;
|
|
import java.util.ArrayList;
|
|
import java.util.Arrays;
|
|
import java.util.HashMap;
|
|
import java.util.LinkedHashSet;
|
|
import java.util.List;
|
|
import java.util.Map;
|
|
import java.util.Objects;
|
|
import java.util.Optional;
|
|
import java.util.Set;
|
|
import java.util.UUID;
|
|
import java.util.function.Function;
|
|
import java.util.function.Predicate;
|
|
import java.util.stream.Collectors;
|
|
|
|
import javax.transaction.Transactional;
|
|
|
|
import org.apache.commons.beanutils.BeanUtils;
|
|
import org.apache.commons.codec.digest.DigestUtils;
|
|
import org.apache.commons.lang3.StringUtils;
|
|
import org.apache.commons.logging.Log;
|
|
import org.apache.commons.logging.LogFactory;
|
|
import org.springframework.beans.factory.annotation.Autowired;
|
|
import org.springframework.cache.annotation.CacheEvict;
|
|
import org.springframework.cache.annotation.Cacheable;
|
|
import org.springframework.jdbc.core.BeanPropertyRowMapper;
|
|
import org.springframework.jdbc.core.JdbcTemplate;
|
|
import org.springframework.scheduling.annotation.Scheduled;
|
|
import org.springframework.stereotype.Component;
|
|
import org.springframework.web.bind.annotation.RequestBody;
|
|
|
|
import eu.dnetlib.organizations.controller.UserRole;
|
|
import eu.dnetlib.organizations.model.Acronym;
|
|
import eu.dnetlib.organizations.model.JournalEntry;
|
|
import eu.dnetlib.organizations.model.OpenaireConflictPK;
|
|
import eu.dnetlib.organizations.model.OpenaireDuplicate;
|
|
import eu.dnetlib.organizations.model.Organization;
|
|
import eu.dnetlib.organizations.model.OtherIdentifier;
|
|
import eu.dnetlib.organizations.model.OtherName;
|
|
import eu.dnetlib.organizations.model.PersistentOrganization;
|
|
import eu.dnetlib.organizations.model.Relationship;
|
|
import eu.dnetlib.organizations.model.Url;
|
|
import eu.dnetlib.organizations.model.User;
|
|
import eu.dnetlib.organizations.model.UserCountry;
|
|
import eu.dnetlib.organizations.model.utils.BrowseEntry;
|
|
import eu.dnetlib.organizations.model.utils.OrganizationConflict;
|
|
import eu.dnetlib.organizations.model.utils.TempBrowseEntry;
|
|
import eu.dnetlib.organizations.model.utils.VocabularyTerm;
|
|
import eu.dnetlib.organizations.model.view.OrganizationView;
|
|
import eu.dnetlib.organizations.model.view.PersistentOrganizationView;
|
|
import eu.dnetlib.organizations.model.view.UserView;
|
|
import eu.dnetlib.organizations.repository.AcronymRepository;
|
|
import eu.dnetlib.organizations.repository.JournalEntryRepository;
|
|
import eu.dnetlib.organizations.repository.OpenaireConflictRepository;
|
|
import eu.dnetlib.organizations.repository.OpenaireDuplicateRepository;
|
|
import eu.dnetlib.organizations.repository.OrganizationRepository;
|
|
import eu.dnetlib.organizations.repository.OtherIdentifierRepository;
|
|
import eu.dnetlib.organizations.repository.OtherNameRepository;
|
|
import eu.dnetlib.organizations.repository.PersistentOrganizationRepository;
|
|
import eu.dnetlib.organizations.repository.RelationshipRepository;
|
|
import eu.dnetlib.organizations.repository.UrlRepository;
|
|
import eu.dnetlib.organizations.repository.UserCountryRepository;
|
|
import eu.dnetlib.organizations.repository.UserRepository;
|
|
import eu.dnetlib.organizations.repository.readonly.OrganizationViewRepository;
|
|
import eu.dnetlib.organizations.repository.readonly.PersistentOrganizationViewRepository;
|
|
|
|
@Component
|
|
public class DatabaseUtils {
|
|
|
|
@Autowired
|
|
private AcronymRepository acronymRepository;
|
|
@Autowired
|
|
private OrganizationRepository organizationRepository;
|
|
@Autowired
|
|
private OtherIdentifierRepository otherIdentifierRepository;
|
|
@Autowired
|
|
private OtherNameRepository otherNameRepository;
|
|
@Autowired
|
|
private UrlRepository urlRepository;
|
|
@Autowired
|
|
private RelationshipRepository relationshipRepository;
|
|
@Autowired
|
|
private UserRepository userRepository;
|
|
@Autowired
|
|
private UserCountryRepository userCountryRepository;
|
|
@Autowired
|
|
private OpenaireConflictRepository openaireConflictRepository;
|
|
@Autowired
|
|
private OpenaireDuplicateRepository openaireDuplicateRepository;
|
|
@Autowired
|
|
private OrganizationViewRepository organizationViewRepository;
|
|
@Autowired
|
|
private JournalEntryRepository journalEntryRepository;
|
|
@Autowired
|
|
private PersistentOrganizationRepository persistentOrganizationRepository;
|
|
@Autowired
|
|
private PersistentOrganizationViewRepository persistentOrganizationViewRepository;
|
|
|
|
@Autowired
|
|
private JdbcTemplate jdbcTemplate;
|
|
|
|
private static final Log log = LogFactory.getLog(DatabaseUtils.class);
|
|
|
|
public enum VocabularyTable {
|
|
languages,
|
|
countries,
|
|
org_types,
|
|
id_types,
|
|
rel_types,
|
|
simrel_types
|
|
}
|
|
|
|
@Transactional
|
|
public String insertOrUpdateOrganization(final OrganizationView orgView, final String user, final boolean isSimpleUser) {
|
|
|
|
final String oldId = StringUtils.isNotBlank(orgView.getId()) ? new String(orgView.getId()) : null;
|
|
|
|
final String oldStatus = oldId != null ? organizationRepository.findById(oldId)
|
|
.map(Organization::getStatus)
|
|
.orElse(null) : null;
|
|
|
|
final boolean alreadyApproved = StringUtils.equals(oldStatus, OrganizationStatus.approved.toString());
|
|
|
|
final String newStatus;
|
|
if (!isSimpleUser) { // IS ADMIN
|
|
newStatus = OrganizationStatus.approved.toString();
|
|
} else if (isSimpleUser && oldStatus == null) {
|
|
newStatus = OrganizationStatus.suggested.toString();
|
|
} else if (isSimpleUser && alreadyApproved) {
|
|
newStatus = OrganizationStatus.approved.toString();
|
|
} else {
|
|
throw new RuntimeException("User not authorized");
|
|
}
|
|
|
|
if (oldId == null || !oldId.startsWith(OpenOrgsConstants.OPENORGS_PREFIX)) {
|
|
if (isSimpleUser) {
|
|
final String pendingId = OpenOrgsConstants.OPENORGS_PENDING_PREFIX + UUID.randomUUID();
|
|
orgView.setId(pendingId);
|
|
// to override the generation strategy of the ID
|
|
organizationRepository.prepareOrgWithId(pendingId);
|
|
} else {
|
|
orgView.setId(null); // The ID is generated by the DB
|
|
}
|
|
}
|
|
|
|
final Organization org = new Organization(orgView.getId(),
|
|
orgView.getName(),
|
|
orgView.getType(),
|
|
orgView.getLat(), orgView.getLng(),
|
|
orgView.getCity(), orgView.getCountry(),
|
|
newStatus,
|
|
orgView.getEcLegalBody(),
|
|
orgView.getEcLegalPerson(), orgView.getEcNonProfit(), orgView.getEcResearchOrganization(), orgView.getEcHigherEducation(),
|
|
orgView.getEcInternationalOrganizationEurInterests(), orgView.getEcInternationalOrganization(), orgView.getEcEnterprise(),
|
|
orgView.getEcSmeValidated(), orgView.getEcNutscode());
|
|
|
|
final String newId = organizationRepository.save(org).getId();
|
|
|
|
final OffsetDateTime now = OffsetDateTime.now();
|
|
|
|
if (StringUtils.equals(newId, oldId)) {
|
|
makeRelations(newId, orgView, true);
|
|
} else {
|
|
organizationRepository.updateCreationDate(newId, user, now);
|
|
makeRelations(newId, orgView, false);
|
|
if (oldId != null) {
|
|
|
|
final List<OpenaireDuplicate> dups = openaireDuplicateRepository.findByLocalId(oldId)
|
|
.stream()
|
|
.map(d -> prepareNewDuplicate(newId, oldId, d))
|
|
.collect(Collectors.toList());
|
|
|
|
openaireDuplicateRepository.saveAll(dups);
|
|
|
|
dups.forEach(d -> {
|
|
openaireDuplicateRepository.updateCreatedByIfMissing(d.getLocalId(), d.getOaOriginalId(), user);
|
|
openaireDuplicateRepository.updateModificationDate(d.getLocalId(), d.getOaOriginalId(), user, now);
|
|
});
|
|
|
|
if (oldId.startsWith(OpenOrgsConstants.OPENORGS_PENDING_PREFIX)) {
|
|
organizationRepository.deleteById(oldId);
|
|
}
|
|
}
|
|
}
|
|
|
|
organizationRepository.updateModificationDate(newId, user, now);
|
|
|
|
JournalOperations op = JournalOperations.UNKNOWN;
|
|
String message = "-";
|
|
|
|
if (newStatus.equals(OrganizationStatus.suggested.toString())) {
|
|
if (oldStatus == null) {
|
|
op = JournalOperations.NEW_SUGG_ORG;
|
|
message = "Created a new suggested org";
|
|
} else if (oldStatus != null) {
|
|
op = JournalOperations.EDIT_SUGG_ORG;
|
|
message = "Metadata updated";
|
|
}
|
|
} else if (newStatus.equals(OrganizationStatus.approved.toString())) {
|
|
if (oldStatus == null) {
|
|
op = JournalOperations.NEW_ORG;
|
|
message = "Created a new organization";
|
|
} else if (oldStatus.equals(OrganizationStatus.suggested.toString())) {
|
|
op = JournalOperations.APPROVE_SUGG_ORG;
|
|
message = "Approved the suggested org: " + oldId;
|
|
|
|
} else {
|
|
op = JournalOperations.EDIT_ORG;
|
|
message = "Metadata updated";
|
|
}
|
|
} else {
|
|
// IMPOSSIBLE ???
|
|
}
|
|
|
|
journalEntryRepository.save(new JournalEntry(newId, op, message, user));
|
|
|
|
return newId;
|
|
}
|
|
|
|
private OpenaireDuplicate prepareNewDuplicate(final String newId, final String oldId, final OpenaireDuplicate old) {
|
|
final OpenaireDuplicate d = new OpenaireDuplicate();
|
|
|
|
d.setLocalId(newId);
|
|
d.setOaOriginalId(old.getOaOriginalId());
|
|
d.setOaCollectedFrom(old.getOaCollectedFrom());
|
|
|
|
if (oldId != null
|
|
&& newId.startsWith(OpenOrgsConstants.OPENORGS_PREFIX)
|
|
&& oldId.startsWith(OpenOrgsConstants.OPENORGS_PENDING_PREFIX)
|
|
&& StringUtils.substringAfter(oldId, OpenOrgsConstants.OPENORGS_PENDING_PREFIX).equalsIgnoreCase(DigestUtils.md5Hex(d.getOaOriginalId()))) {
|
|
d.setRelType(SimilarityType.is_similar.toString());
|
|
} else {
|
|
d.setRelType(SimilarityType.suggested.toString());
|
|
}
|
|
return d;
|
|
|
|
}
|
|
|
|
@Transactional
|
|
public void saveDuplicates(final List<OpenaireDuplicate> simrels, final String user) {
|
|
final OffsetDateTime now = OffsetDateTime.now();
|
|
|
|
// Set is_different all the existing relations that refer to the new duplicates (suggested or is_similar)
|
|
|
|
final List<OpenaireDuplicate> toSave = new ArrayList<>();
|
|
toSave.addAll(simrels);
|
|
|
|
final List<OpenaireDuplicate> toDelete = new ArrayList<>();
|
|
|
|
for (final OpenaireDuplicate r1 : simrels) {
|
|
if (!r1.getRelType().equals(SimilarityType.is_different.toString())) {
|
|
for (final OpenaireDuplicate r2 : openaireDuplicateRepository.findByOaOriginalId(r1.getOaOriginalId())) {
|
|
if (r2.getLocalId().startsWith(OpenOrgsConstants.OPENORGS_PENDING_PREFIX)) {
|
|
toDelete.add(r2);
|
|
} else if (!r1.getLocalId().equals(r2.getLocalId())) {
|
|
r2.setRelType(SimilarityType.is_different.toString());
|
|
toSave.add(r2);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
// Save the new rels
|
|
openaireDuplicateRepository.saveAll(toSave).forEach(d -> {
|
|
openaireDuplicateRepository.updateCreatedByIfMissing(d.getLocalId(), d.getOaOriginalId(), user);
|
|
openaireDuplicateRepository.updateModificationDate(d.getLocalId(), d.getOaOriginalId(), user, now);
|
|
});
|
|
log.debug("Simrels saved (contains also the fixed rels): " + toSave.size());
|
|
|
|
// delete rels to pending orgs
|
|
openaireDuplicateRepository.deleteAll(toDelete);
|
|
log.debug("Simrels related to a pending orgs deleted: " + toDelete.size());
|
|
|
|
// Updating journal
|
|
toSave.stream().collect(Collectors.groupingBy(OpenaireDuplicate::getLocalId)).forEach((id, list) -> {
|
|
final long sim = list.stream()
|
|
.filter(d -> d.getRelType().equals(SimilarityType.is_similar.toString()))
|
|
.count();
|
|
|
|
final long diff = list.stream()
|
|
.filter(d -> d.getRelType().equals(SimilarityType.is_different.toString()))
|
|
.count();
|
|
|
|
final long sugg = list.stream()
|
|
.filter(d -> d.getRelType().equals(SimilarityType.suggested.toString()))
|
|
.count();
|
|
|
|
final String message = String.format("Duplicates updated (%s similars, %s differents, %s suggested)", sim, diff, sugg);
|
|
|
|
journalEntryRepository.save(new JournalEntry(id, JournalOperations.DUPLICATES, message, user));
|
|
});;
|
|
}
|
|
|
|
@Scheduled(fixedRate = 300000)
|
|
public void verifyConsistency() {
|
|
|
|
log.debug("Verify consistency (START)");
|
|
|
|
// delete invalid pending orgs (without simrels)
|
|
final int n = jdbcTemplate
|
|
.update("delete from organizations where id in (select o.id from organizations o left outer join oa_duplicates d on (o.id = d.local_id) where o.status = 'suggested' and o.created_by = 'dedupWf' group by o.id having count(d.local_id) = 0)");
|
|
|
|
if (n > 0) {
|
|
log.info("Invalid pending orgs deleted: " + n);
|
|
}
|
|
|
|
log.debug("Verify consistency (END)");
|
|
|
|
}
|
|
|
|
private void makeRelations(final String orgId, final OrganizationView orgView, final boolean update) {
|
|
if (update) {
|
|
acronymRepository.deleteByOrgId(orgId);
|
|
otherNameRepository.deleteByOrgId(orgId);
|
|
otherIdentifierRepository.deleteByOrgId(orgId);
|
|
urlRepository.deleteByOrgId(orgId);
|
|
relationshipRepository.deleteById1(orgId);
|
|
relationshipRepository.deleteById2(orgId);
|
|
}
|
|
orgView.getAcronyms().forEach(s -> acronymRepository.save(new Acronym(orgId, s)));
|
|
orgView.getOtherNames().forEach(n -> otherNameRepository.save(new OtherName(orgId, n.getName(), n.getLang())));
|
|
orgView.getOtherIdentifiers().forEach(id -> otherIdentifierRepository.save(new OtherIdentifier(orgId, id.getId(), id.getType())));
|
|
orgView.getUrls().forEach(u -> urlRepository.save(new Url(orgId, u)));
|
|
orgView.getRelations().forEach(r -> makeRelation(orgId, r.getRelatedOrgId(), RelationType.valueOf(r.getType())));
|
|
}
|
|
|
|
@Cacheable("vocs")
|
|
public List<VocabularyTerm> listValuesOfVocabularyTable(final VocabularyTable table) {
|
|
final String sql = "select val as value, name as name from " + table + " order by name";
|
|
return jdbcTemplate.query(sql, new BeanPropertyRowMapper<>(VocabularyTerm.class));
|
|
}
|
|
|
|
@Cacheable("countries_for_user")
|
|
public List<VocabularyTerm> listCountriesForUser(final String name) {
|
|
final String sql =
|
|
"select uc.country as value, c.name as name from user_countries uc left outer join countries c on (c.val = uc.country) where uc.email = ? order by c.name";
|
|
return jdbcTemplate.query(sql, new BeanPropertyRowMapper<>(VocabularyTerm.class), name);
|
|
}
|
|
|
|
@CacheEvict(value = {
|
|
"vocs", "countries_for_user"
|
|
}, allEntries = true)
|
|
public void clearCache() {
|
|
log.info("All caches cleaned");
|
|
}
|
|
|
|
@Transactional
|
|
public void updateUser(@RequestBody final UserView userView) {
|
|
final User user = userRepository.findById(userView.getEmail()).orElseThrow(() -> new RuntimeException("User not found"));
|
|
user.setFullname(userView.getFullname());
|
|
user.setOrganization(userView.getOrganization());
|
|
user.setReferencePerson(userView.getReferencePerson());
|
|
user.setRequestMessage(userView.getRequestMessage());
|
|
user.setRole(userView.getRole());
|
|
user.setValid(userView.isValid());
|
|
userRepository.save(user);
|
|
userCountryRepository.deleteByEmail(userView.getEmail());
|
|
if (userView.getCountries() != null) {
|
|
userCountryRepository
|
|
.saveAll(Arrays.stream(userView.getCountries()).map(c -> new UserCountry(userView.getEmail(), c)).collect(Collectors.toList()));
|
|
}
|
|
}
|
|
|
|
@Transactional
|
|
public void deleteUser(final String email) {
|
|
userCountryRepository.deleteByEmail(email);
|
|
userRepository.deleteById(email);
|
|
}
|
|
|
|
@Transactional
|
|
public void newUser(final String email,
|
|
final String fullname,
|
|
final String organization,
|
|
final String referencePerson,
|
|
final String requestMessage,
|
|
final List<String> countries) {
|
|
|
|
final User user = new User();
|
|
user.setEmail(email);
|
|
user.setFullname(fullname);
|
|
user.setOrganization(organization);
|
|
user.setReferencePerson(referencePerson);
|
|
user.setRequestMessage(requestMessage);
|
|
user.setRole(UserRole.PENDING.name());
|
|
user.setValid(false);
|
|
|
|
userRepository.save(user);
|
|
|
|
if (countries != null) {
|
|
userCountryRepository.saveAll(countries.stream().map(c -> new UserCountry(email, c)).collect(Collectors.toList()));
|
|
}
|
|
}
|
|
|
|
@Transactional
|
|
public List<Relationship> makeRelation(final String id1, final String id2, final RelationType type) {
|
|
final Relationship r1 = new Relationship(id1, id2, type.toString());
|
|
final Relationship r2 = new Relationship(id2, id1, type.getInverse().toString());
|
|
relationshipRepository.save(r1);
|
|
relationshipRepository.save(r2);
|
|
return Arrays.asList(r1, r2);
|
|
}
|
|
|
|
// BROWSE BY COUNTRY
|
|
public List<BrowseEntry> browseCountries() {
|
|
final String sql =
|
|
"select o.country as code, c.name as name, o.status as group, count(o.status) as count from organizations o left outer join countries c on (o.country = c.val) group by o.country, c.name, o.status";
|
|
return listBrowseEntries(sql);
|
|
}
|
|
|
|
// BROWSE BY COUNTRY FOR USER
|
|
public List<BrowseEntry> browseCountriesForUser(final String email) {
|
|
final String sql =
|
|
"select o.country as code, c.name as name, o.status as group, count(o.status) as count from user_countries uc left outer join organizations o on (uc.country = o.country) left outer join countries c on (o.country = c.val) where uc.email=? group by o.country, c.name, o.status";
|
|
return listBrowseEntries(sql, email);
|
|
}
|
|
|
|
// BROWSE BY ORG TYPE
|
|
public List<BrowseEntry> browseTypes() {
|
|
final String sql =
|
|
"select type as code, type as name, status as group, count(status) as count from organizations group by type, status";
|
|
return listBrowseEntries(sql);
|
|
}
|
|
|
|
// BROWSE BY ORG TYPE FOR USER
|
|
public List<BrowseEntry> browseTypesForUser(final String email) {
|
|
final String sql = "select o.type as code, o.type as name,"
|
|
+ "o.status as group, count(o.status) as count "
|
|
+ "from organizations o "
|
|
+ "left outer join user_countries uc on (uc.country = o.country) "
|
|
+ "where uc.email=? "
|
|
+ "group by o.type, o.status";
|
|
return listBrowseEntries(sql, email);
|
|
}
|
|
|
|
private List<BrowseEntry> listBrowseEntries(final String sql, final Object... params) {
|
|
final Map<String, BrowseEntry> map = new HashMap<>();
|
|
|
|
for (final TempBrowseEntry t : jdbcTemplate.query(sql, new BeanPropertyRowMapper<>(TempBrowseEntry.class), params)) {
|
|
if (StringUtils.isNotBlank(t.getCode())) {
|
|
if (!map.containsKey(t.getCode())) {
|
|
final BrowseEntry e = new BrowseEntry();
|
|
e.setCode(t.getCode());
|
|
e.setName(t.getName());
|
|
map.put(t.getCode(), e);
|
|
}
|
|
map.get(t.getCode()).getValues().put(t.getGroup(), t.getCount());
|
|
}
|
|
}
|
|
|
|
return map.values().stream().sorted((o1, o2) -> StringUtils.compare(o1.getName(), o2.getName())).collect(Collectors.toList());
|
|
}
|
|
|
|
public List<OrganizationConflict> listConflictsForId(final String id) {
|
|
final String sql =
|
|
"select o.id, o.name, o.type, o.city, o.country from oa_conflicts c left outer join organizations o on (c.id2 = o.id) where o.id is not null and c.id1 = ? and c.reltype = 'suggested'";
|
|
return jdbcTemplate.query(sql, new BeanPropertyRowMapper<>(OrganizationConflict.class), id);
|
|
}
|
|
|
|
@Transactional
|
|
public void importDedupEvents() throws Exception {
|
|
jdbcTemplate.update("CALL import_dedup_events();");
|
|
// verifyConflictGroups(true);
|
|
}
|
|
|
|
@Transactional
|
|
public void updateFulltextIndex() {
|
|
try {
|
|
log.info("Updating Fulltext Index...");
|
|
jdbcTemplate.queryForList("SELECT refresh_index_search()");
|
|
log.info("...done");
|
|
} catch (final Exception e) {
|
|
log.error("Error updating Fulltext Index", e);
|
|
}
|
|
}
|
|
|
|
@Transactional
|
|
public String fixConflictSimilars(final List<String> similarIds, final String user) {
|
|
|
|
final List<OrganizationView> views =
|
|
similarIds.stream().map(organizationViewRepository::findById).filter(Optional::isPresent).map(Optional::get).collect(Collectors.toList());
|
|
|
|
final List<OrganizationView> persistents = views.stream().filter(v -> v.getPersistent()).collect(Collectors.toList());
|
|
|
|
final OrganizationView masterOrg = new OrganizationView();
|
|
|
|
if (persistents.size() > 1) {
|
|
throw new RuntimeException("Too many persintent organizations");
|
|
} else if (persistents.size() == 1) {
|
|
backupOrg(persistents.get(0), user);
|
|
masterOrg.setId(persistents.get(0).getId());
|
|
masterOrg.setStatus(OrganizationStatus.approved.toString());
|
|
} else {
|
|
masterOrg.setId(null);
|
|
masterOrg.setStatus(null);
|
|
}
|
|
return fixConflicts(masterOrg, views, user);
|
|
}
|
|
|
|
private String backupOrg(final OrganizationView org, final String user) {
|
|
final String origId = org.getId();
|
|
final String backupId = origId + "::" + OffsetDateTime.now().toEpochSecond();
|
|
|
|
organizationRepository.prepareOrgWithId(backupId);
|
|
try {
|
|
|
|
final OrganizationView backupOrg = (OrganizationView) BeanUtils.cloneBean(org);
|
|
backupOrg.setId(backupId);
|
|
|
|
insertOrUpdateOrganization(backupOrg, user, false);
|
|
|
|
organizationRepository.updateStatus(backupId, OrganizationStatus.hidden.toString());
|
|
|
|
journalEntryRepository
|
|
.save(new JournalEntry(origId, JournalOperations.BACKUP_ORG, "Saved a backup copy: " + backupId, user));
|
|
journalEntryRepository
|
|
.save(new JournalEntry(backupId, JournalOperations.BACKUP_ORG, "Saved a backup copy of " + origId, user));
|
|
|
|
return backupId;
|
|
} catch (final Exception e) {
|
|
log.error("Error performing the backup of " + origId, e);
|
|
throw new RuntimeException("Error performing the backup of " + origId, e);
|
|
}
|
|
}
|
|
|
|
private String fixConflicts(final OrganizationView masterOrg, final List<OrganizationView> orgs, final String user) {
|
|
|
|
final OffsetDateTime now = OffsetDateTime.now();
|
|
|
|
final String finalMessage = (masterOrg.getId() == null ? "New org created merging: " : "Merging in persistent org: ") +
|
|
orgs.stream()
|
|
.map(OrganizationView::getId)
|
|
.collect(Collectors.joining(", "));
|
|
|
|
masterOrg.setName(findFirstString(orgs, OrganizationView::getName));
|
|
masterOrg.setType(findFirstString(orgs, OrganizationView::getType));
|
|
masterOrg.setLat(findFirstNumber(orgs, OrganizationView::getLat));
|
|
masterOrg.setLng(findFirstNumber(orgs, OrganizationView::getLng));
|
|
masterOrg.setCity(findFirstString(orgs, OrganizationView::getCity));
|
|
masterOrg.setCountry(findFirstString(orgs, OrganizationView::getCountry));
|
|
masterOrg.setOtherIdentifiers(findAll(orgs, OrganizationView::getOtherIdentifiers));
|
|
masterOrg.setOtherNames(findAll(orgs, OrganizationView::getOtherNames));
|
|
masterOrg.setAcronyms(findAll(orgs, OrganizationView::getAcronyms));
|
|
masterOrg.setUrls(findAll(orgs, OrganizationView::getUrls));
|
|
masterOrg.setRelations(findAll(orgs, OrganizationView::getRelations, r -> !r.getType().equals(RelationType.Merged_In.toString())
|
|
&& !r.getType().equals(RelationType.Merged_In.toString())));
|
|
|
|
masterOrg.getOtherNames()
|
|
.addAll(orgs.stream()
|
|
.map(OrganizationView::getName)
|
|
.filter(StringUtils::isNotBlank)
|
|
.filter(s -> StringUtils.equalsIgnoreCase(s, masterOrg.getName()))
|
|
.map(s -> new eu.dnetlib.organizations.model.view.OtherName(s, "UNKNOWN"))
|
|
.collect(Collectors.toList()));
|
|
|
|
final String masterId = insertOrUpdateOrganization(masterOrg, user, false);
|
|
|
|
// I hide the merged organizations
|
|
orgs.stream()
|
|
.map(OrganizationView::getId)
|
|
.filter(id -> !id.equals(masterId))
|
|
.forEach(id -> {
|
|
hideConflictOrgs(masterId, id);
|
|
journalEntryRepository
|
|
.save(new JournalEntry(id, JournalOperations.FIX_CONFLICT, "The org has been hidded and merged in " + masterId, user));
|
|
});
|
|
|
|
// I reassign the duplicates to the new org
|
|
final List<OpenaireDuplicate> newDuplicates = orgs.stream()
|
|
.map(OrganizationView::getId)
|
|
.map(openaireDuplicateRepository::findByLocalId)
|
|
.flatMap(l -> l.stream())
|
|
.map(d -> new OpenaireDuplicate(masterId, d.getOaOriginalId(), d.getRelType(), d.getOaCollectedFrom()))
|
|
.collect(Collectors.toList());
|
|
|
|
openaireDuplicateRepository.saveAll(newDuplicates);
|
|
newDuplicates.forEach(d -> {
|
|
openaireDuplicateRepository.updateCreatedByIfMissing(d.getLocalId(), d.getOaOriginalId(), user);
|
|
openaireDuplicateRepository.updateModificationDate(d.getLocalId(), d.getOaOriginalId(), user, now);
|
|
});
|
|
|
|
orgs.forEach(org -> {
|
|
final String similarId = org.getId();
|
|
openaireConflictRepository.updateMultipleStatusAndResetGroup(similarId, SimilarityType.is_different.toString(), user, now);
|
|
});
|
|
|
|
for (int i = 0; i < orgs.size(); i++) {
|
|
for (int j = i + 1; j < orgs.size(); j++) {
|
|
openaireConflictRepository
|
|
.updateStatusAndResetGroup(orgs.get(i).getId(), orgs.get(j).getId(), SimilarityType.is_similar.toString(), user, now);
|
|
}
|
|
}
|
|
|
|
journalEntryRepository
|
|
.save(new JournalEntry(masterId, JournalOperations.FIX_CONFLICT, finalMessage, user));
|
|
|
|
return masterId;
|
|
}
|
|
|
|
@Transactional
|
|
public void fixConflictDifferents(final List<String> differentsIds, final String user) {
|
|
|
|
final OffsetDateTime now = OffsetDateTime.now();
|
|
|
|
final String message = "Mark the following orgs as different: " + StringUtils.join(differentsIds, ", ");
|
|
|
|
for (int i = 0; i < differentsIds.size(); i++) {
|
|
for (int j = i + 1; j < differentsIds.size(); j++) {
|
|
openaireConflictRepository
|
|
.updateStatusAndResetGroup(differentsIds.get(i), differentsIds.get(j), SimilarityType.is_different.toString(), user, now);
|
|
}
|
|
journalEntryRepository.save(new JournalEntry(differentsIds.get(i), JournalOperations.NO_CONFLICT, message, user));
|
|
}
|
|
}
|
|
|
|
@Transactional
|
|
public Optional<User> findUser(final String email) {
|
|
return userRepository.findById(email);
|
|
}
|
|
|
|
@Transactional
|
|
public void updateUserDetails(final String email, final String fullname, final String organization) {
|
|
userRepository.updateDetails(email, fullname, organization, OffsetDateTime.now());
|
|
}
|
|
|
|
private String findFirstString(final List<OrganizationView> views, final Function<OrganizationView, String> mapper) {
|
|
return views.stream().map(mapper).filter(StringUtils::isNotBlank).findFirst().orElse(null);
|
|
}
|
|
|
|
private Double findFirstNumber(final List<OrganizationView> views, final Function<OrganizationView, Double> mapper) {
|
|
return views.stream().map(mapper).filter(Objects::nonNull).filter(n -> n != 0).findFirst().orElse(0.0);
|
|
}
|
|
|
|
private <T> Set<T> findAll(final List<OrganizationView> views, final Function<OrganizationView, Set<T>> mapper) {
|
|
return views.stream().map(mapper).flatMap(s -> s.stream()).collect(Collectors.toCollection(LinkedHashSet::new));
|
|
}
|
|
|
|
private <T> Set<T> findAll(final List<OrganizationView> views, final Function<OrganizationView, Set<T>> mapper, final Predicate<T> filter) {
|
|
return views.stream().map(mapper).flatMap(s -> s.stream()).filter(filter).collect(Collectors.toCollection(LinkedHashSet::new));
|
|
}
|
|
|
|
private List<Relationship> hideConflictOrgs(final String masterId, final String otherId) {
|
|
organizationRepository.updateStatus(otherId, OrganizationStatus.hidden.toString());
|
|
openaireConflictRepository.findById(new OpenaireConflictPK(masterId, otherId)).ifPresent(openaireConflictRepository::delete);
|
|
openaireConflictRepository.findById(new OpenaireConflictPK(otherId, masterId)).ifPresent(openaireConflictRepository::delete);
|
|
return makeRelation(masterId, otherId, RelationType.Merges);
|
|
}
|
|
|
|
public List<String> invalidCountriesInSuggestions() {
|
|
final String sql =
|
|
" select distinct t.oa_country from tmp_dedup_events t left outer join countries c on (t.oa_country = c.val) where c.val is null order by t.oa_country";
|
|
return jdbcTemplate.queryForList(sql, String.class);
|
|
}
|
|
|
|
public Iterable<PersistentOrganizationView> listPersistentOrgs() {
|
|
return persistentOrganizationViewRepository.findAll();
|
|
}
|
|
|
|
public String addPersistentOrgs(final String id) {
|
|
|
|
final boolean valid;
|
|
final String ooid;
|
|
|
|
if (id.length() == 46) {
|
|
final Optional<OrganizationView> orgView = organizationViewRepository.findByOpenaireId(id);
|
|
valid = orgView.map(OrganizationView::getStatus)
|
|
.filter(s -> s.equals(OrganizationStatus.approved.toString()))
|
|
.isPresent();
|
|
ooid = orgView.get().getId();
|
|
} else {
|
|
valid = organizationRepository.findById(id)
|
|
.map(Organization::getStatus)
|
|
.filter(s -> s.equals(OrganizationStatus.approved.toString()))
|
|
.isPresent();
|
|
ooid = id;
|
|
}
|
|
|
|
if (valid) {
|
|
persistentOrganizationRepository.save(new PersistentOrganization(ooid));
|
|
return ooid;
|
|
} else {
|
|
throw new RuntimeException("The ID does not refer to an approved Organization");
|
|
}
|
|
}
|
|
|
|
public void deletePersistentOrgs(final String id) {
|
|
persistentOrganizationRepository.deleteById(id);
|
|
}
|
|
|
|
}
|