fixed import of legacy tr rules

.gitignore

@@ -7,7 +7,7 @@
 *.iws
 *.java-version
 *~
-/**/*.sh
+/**/ssh_tunnel_*.sh
 /**/my_application.properties
 .vscode
 .classpath

apps/dnet-is-application/src/main/java/eu/dnetlib/is/importer/ContextImporter.java

@@ -1,15 +1,13 @@
 package eu.dnetlib.is.importer;
 
 import java.io.IOException;
-import java.io.StringReader;
 
 import org.apache.commons.lang3.BooleanUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
-import org.dom4j.Document;
 import org.dom4j.DocumentException;
+import org.dom4j.DocumentHelper;
 import org.dom4j.Node;
-import org.dom4j.io.SAXReader;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Service;
 
@@ -44,9 +42,9 @@ public class ContextImporter {
 	private static final Log log = LogFactory.getLog(ContextImporter.class);
 
 	public void loadFromOldProfile(final String xml) throws DocumentException, IOException {
-		final SAXReader reader = new SAXReader();
+		DocumentHelper.parseText(xml)
-		final Document doc = reader.read(new StringReader(xml));
+			.selectNodes("//context")
-		doc.selectNodes("//context").forEach(this::saveContext);
+			.forEach(this::saveContext);
 	}
 
 	private void saveContext(final Node node) {

apps/dnet-is-application/src/main/java/eu/dnetlib/is/importer/ImporterController.java

@@ -24,6 +24,12 @@ import eu.dnetlib.is.vocabulary.model.Vocabulary;
 @RequestMapping("/api/import")
 public class ImporterController extends AbstractDnetController {
 
+	// EXAMPLE:
+	// find ./VocabularyDSResourceType/ -name "*.xml" -exec curl -X POST "http://localhost:8280/api/import/vocabulary" -H "accept: */*" -H
+	// "Content-Type: text/plain" --data-binary @{} \;
+	// find ./DedupConfigurationDSResources/ -name "*.xml" -exec curl -X POST "http://localhost:8280/api/import/resource" -H "accept: */*"
+	// -H "Content-Type: text/plain" --data-binary @{} \;
+
 	@Autowired
 	private ContextImporter contextImporter;
 
@@ -51,6 +57,7 @@ public class ImporterController extends AbstractDnetController {
 	})
 	public String importResource(final HttpServletRequest request) throws Exception {
 		final String xml = IOUtils.toString(request.getInputStream(), StandardCharsets.UTF_8);
+
 		return oldProfilesImporter.importSimpleResource(xml);
 	}
 

apps/dnet-is-application/src/main/java/eu/dnetlib/is/importer/OldProfilesImporter.java

@@ -1,6 +1,5 @@
 package eu.dnetlib.is.importer;
 
-import java.io.StringReader;
 import java.util.Date;
 
 import javax.transaction.Transactional;
@@ -8,8 +7,8 @@ import javax.transaction.Transactional;
 import org.apache.commons.lang3.StringUtils;
 import org.dom4j.Document;
 import org.dom4j.DocumentException;
+import org.dom4j.DocumentHelper;
 import org.dom4j.Node;
-import org.dom4j.io.SAXReader;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Service;
 
@@ -41,10 +40,9 @@ public class OldProfilesImporter {
 
 	@Transactional
 	public String importSimpleResource(final String xml) throws InformationServiceException {
-		final SAXReader reader = new SAXReader();
 
 		try {
-			final Document doc = reader.read(new StringReader(xml));
+			final Document doc = DocumentHelper.parseText(xml);
 
 			final String id = StringUtils.substringBefore(doc.valueOf("//RESOURCE_IDENTIFIER/@value"), "_");
 			final Date now = new Date();
@@ -70,8 +68,9 @@ public class OldProfilesImporter {
 					resContent = XmlIndenter.indent(doc.selectSingleNode("//*[local-name() = 'stylesheet']"));
 				} else {
 					final String code = doc.valueOf("//SCRIPT/CODE").trim();
+
 					try {
-						final Document xsltDoc = reader.read(new StringReader(code));
+						final Document xsltDoc = DocumentHelper.parseText(code);
 						res.setType("transformation_rule_xslt");
 						resContent = XmlIndenter.indent(xsltDoc);
 					} catch (final DocumentException e) {
@@ -109,8 +108,7 @@ public class OldProfilesImporter {
 
 	@Transactional
 	public Vocabulary importVocabulary(final String xml) throws Exception {
-		final SAXReader reader = new SAXReader();
+		final Document doc = DocumentHelper.parseText(xml);
-		final Document doc = reader.read(new StringReader(xml));
 
 		final Vocabulary voc = new Vocabulary();
 		final String vocId = doc.valueOf("//VOCABULARY_NAME/@code");

libs/dnet-is-common/src/main/resources/import_scripts/loadVocs.sh

@@ -0,0 +1,6 @@
+#!/bin/sh
+
+find ./VocabularyDSResourceType/ -name "*.xml" -exec curl -X POST "http://localhost:8280/api/import/vocabulary" -H "accept: */*" -H "Content-Type: text/plain" --data-binary @{} \;
+
+
+find ./DedupConfigurationDSResources/ -name "*.xml" -exec curl -X POST "http://localhost:8280/api/import/resource" -H "accept: */*" -H "Content-Type: text/plain" --data-binary @{} \;