csv export of duplicates and suggested orgs
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parent
3450f2764e
commit
878171b204
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@ -1,5 +1,7 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<parent>
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<groupId>eu.dnetlib.dhp</groupId>
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@ -58,6 +60,12 @@
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<artifactId>jaxb-runtime</artifactId>
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</dependency>
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<!-- CSV -->
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<dependency>
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<groupId>com.opencsv</groupId>
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<artifactId>opencsv</artifactId>
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<version>5.4</version>
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</dependency>
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<!-- hot swapping, disable cache for template, enable live reload -->
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<dependency>
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@ -1,5 +1,6 @@
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package eu.dnetlib.organizations.controller;
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import java.io.IOException;
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import java.time.OffsetDateTime;
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import java.util.ArrayList;
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import java.util.Arrays;
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@ -12,6 +13,8 @@ import java.util.TreeMap;
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import java.util.TreeSet;
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import java.util.stream.Stream;
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import javax.servlet.http.HttpServletResponse;
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import org.apache.commons.lang3.StringUtils;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.data.domain.Page;
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@ -47,6 +50,7 @@ import eu.dnetlib.organizations.repository.readonly.OrganizationInfoViewReposito
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import eu.dnetlib.organizations.repository.readonly.OrganizationSimpleViewRepository;
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import eu.dnetlib.organizations.repository.readonly.OrganizationViewRepository;
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import eu.dnetlib.organizations.repository.readonly.SuggestionInfoViewByCountryRepository;
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import eu.dnetlib.organizations.utils.CSVConverter;
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import eu.dnetlib.organizations.utils.DatabaseUtils;
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import eu.dnetlib.organizations.utils.OrganizationStatus;
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@ -184,7 +188,13 @@ public class OrganizationController extends AbstractDnetController {
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} else {
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throw new RuntimeException("User not authorized");
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}
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}
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@GetMapping(value = "/duplicates/byCountry/{country}/csv", produces = "text/csv")
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public void findDuplicatesByCountryCSV(@PathVariable final String country, final HttpServletResponse res, final Authentication authentication)
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throws IOException {
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final Iterable<DuplicateGroupView> list = findDuplicatesByCountry(country, authentication);
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CSVConverter.writeCSV(res.getOutputStream(), list, DuplicateGroupView.class, "id", "name", "city", "country", "numberOfDuplicates");
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}
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private Collection<Set<OrganizationConflict>> groupConflicts(final Stream<ConflictGroupView> stream) {
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@ -279,6 +289,16 @@ public class OrganizationController extends AbstractDnetController {
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}
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}
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@GetMapping(value = "/byCountry/{status}/{code}/csv", produces = "text/csv")
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public void findOrgsByStatusAndCountryCSV(@PathVariable final String status,
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@PathVariable final String code,
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final HttpServletResponse res,
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final Authentication authentication) throws IOException {
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final Iterable<OrganizationSimpleView> list = findOrgsByStatusAndCountry(status, code, authentication);
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CSVConverter.writeCSV(res
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.getOutputStream(), list, OrganizationSimpleView.class, "id", "name", "type", "city", "country", "acronyms", "urls", "status", "nSimilarDups", "nSuggestedDups", "nDifferentDups");
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}
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@GetMapping("/byType/{status}/{type}/{page}/{size}")
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public Page<OrganizationSimpleView> findByType(@PathVariable final String status,
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@PathVariable final String type,
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@ -0,0 +1,49 @@
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package eu.dnetlib.organizations.utils;
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import java.io.IOException;
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import java.io.OutputStream;
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import java.io.StringWriter;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import com.opencsv.CSVWriter;
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import com.opencsv.bean.ColumnPositionMappingStrategy;
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import com.opencsv.bean.StatefulBeanToCsv;
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import com.opencsv.bean.StatefulBeanToCsvBuilder;
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import com.opencsv.exceptions.CsvException;
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public class CSVConverter {
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private static final Log log = LogFactory.getLog(CSVConverter.class);
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public static <T> void writeCSV(final OutputStream out, final Iterable<T> list, final Class<T> clazz, final String... columns) {
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final StringWriter sw = new StringWriter();
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sw.write(StringUtils.join(columns, ","));
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sw.write(CSVWriter.DEFAULT_LINE_END);
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try {
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final ColumnPositionMappingStrategy<T> mapStrategy = new ColumnPositionMappingStrategy<>();
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mapStrategy.setType(clazz);
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mapStrategy.setColumnMapping(columns);
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final StatefulBeanToCsv<T> btcsv = new StatefulBeanToCsvBuilder<T>(sw)
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.withQuotechar(CSVWriter.DEFAULT_QUOTE_CHARACTER)
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.withEscapechar(CSVWriter.DEFAULT_ESCAPE_CHARACTER)
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.withMappingStrategy(mapStrategy)
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.withSeparator(',')
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.build();
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btcsv.write(list.iterator());
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IOUtils.write(sw.toString(), out);
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} catch (final CsvException | IOException ex) {
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log.error("Error mapping Bean to CSV", ex);
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}
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}
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}
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@ -1,7 +1,8 @@
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<h2>Duplicates</h2>
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<div class="input-group input-group-sm mt-3 mb-3">
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<div class="row mt-3 mb-3">
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<div class="col">
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<div class="input-group input-group-sm">
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<div class="input-group-append">
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<span class="input-group-text text-outline-primary">Current country:</span>
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<button class="btn btn-outline-primary dropdown-toggle" data-toggle="dropdown">{{country}}</button>
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@ -16,6 +17,11 @@
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</div>
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</div>
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</div>
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</div>
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<div class="col text-right" ng-show="duplicates.length > 0">
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<a class="btn btn-sm btn-outline-primary" target="_blank" href="/api/organizations/duplicates/byCountry/{{country}}/csv" download="duplicates.{{country}}.csv">download as CSV</a>
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</div>
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</div>
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<h5 class="text-muted" ng-if="!loading && duplicates.length == 0">No duplicates</h5>
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@ -1,6 +1,8 @@
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<h2>Pending Organizations</h2>
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<h2>Suggested Organizations</h2>
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<div class="input-group input-group-sm mt-3 mb-3">
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<div class="row mt-3 mb-3">
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<div class="col">
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<div class="input-group input-group-sm">
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<div class="input-group-append">
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<span class="input-group-text text-outline-primary">Current country:</span>
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<button class="btn btn-outline-primary dropdown-toggle" data-toggle="dropdown">{{country}}</button>
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</div>
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</div>
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</div>
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</div>
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<div class="col text-right" ng-show="orgs.length > 0">
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<a class="btn btn-sm btn-outline-primary" target="_blank" href="api/organizations/byCountry/suggested/{{country}}/csv" download="suggested_orgs.{{country}}.csv">download as CSV</a>
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</div>
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</div>
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<h5 class="text-muted" ng-if="!loading && orgs.length == 0">No pending organizations</h5>
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<h5 class="text-muted" ng-if="!loading && orgs.length == 0">No suggested organizations</h5>
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<p ng-show="orgs.length > 0">
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<input type="text" class="form-control form-control-sm" ng-model="orgFilter" placeholder="Filter..."/>
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@ -327,9 +327,9 @@ orgsModule.directive('orgConflicts', function($http, $window, $location, $route,
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angular.forEach(scope.conflicts, function(o, pos) { ids.push(o.id); });
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if (merge) {
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call_http_post($http, "/api/organizations/conflicts/fix/similar", ids, function(res) { $window.location.assign('#!/edit/0/' + res.data[0]); });
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call_http_post($http, "api/organizations/conflicts/fix/similar", ids, function(res) { $window.location.assign('#!/edit/0/' + res.data[0]); });
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} else {
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call_http_post($http, "/api/organizations/conflicts/fix/different", ids, function(res) { $route.reload(); });
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call_http_post($http, "api/organizations/conflicts/fix/different", ids, function(res) { $route.reload(); });
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}
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} else {
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alert('Invalid group !!!');
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@ -740,7 +740,7 @@ orgsModule.controller('conflictsCtrl', function ($scope, $http, $routeParams, $l
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var ids = [];
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angular.forEach(group, function(o, pos) { ids.push(o.id); });
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var url = "/api/organizations/conflicts/fix/";
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var url = "api/organizations/conflicts/fix/";
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if (merge) { url += "similar"; }
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else { url += "different"; }
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