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contexts

This commit is contained in:
Michele Artini 2022-06-24 14:34:03 +02:00
parent d7779b364a
commit 154b27b0bb
25 changed files with 1207 additions and 3 deletions
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125
apps/dnet-is-application/src/main/java/eu/dnetlib/is/context/ContextImporter.java Normal file
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package eu.dnetlib.is.context;
import java.io.IOException;
import java.io.StringReader;
import org.apache.commons.lang3.BooleanUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.dom4j.Document;
import org.dom4j.DocumentException;
import org.dom4j.Node;
import org.dom4j.io.SAXReader;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import eu.dnetlib.is.context.model.Category;
import eu.dnetlib.is.context.model.ConceptLevel0;
import eu.dnetlib.is.context.model.ConceptLevel1;
import eu.dnetlib.is.context.model.ConceptLevel2;
import eu.dnetlib.is.context.model.Context;
import eu.dnetlib.is.context.model.CtxInfo;
import eu.dnetlib.is.context.model.CtxInfoWithClaim;
import eu.dnetlib.is.context.model.Parameter;
import eu.dnetlib.is.context.model.repository.CategoryRepository;
import eu.dnetlib.is.context.model.repository.ConceptLevel0Repository;
import eu.dnetlib.is.context.model.repository.ConceptLevel1Repository;
import eu.dnetlib.is.context.model.repository.ConceptLevel2Repository;
import eu.dnetlib.is.context.model.repository.ContextRepository;
@Component
public class ContextImporter {
@Autowired
private ContextRepository contextRepository;
@Autowired
private CategoryRepository categoryRepository;
@Autowired
private ConceptLevel0Repository conceptLevel0Repository;
@Autowired
private ConceptLevel1Repository conceptLevel1Repository;
@Autowired
private ConceptLevel2Repository conceptLevel2Repository;
private static final Log log = LogFactory.getLog(ContextImporter.class);
public void loadFromOldProfile(final String xml) throws DocumentException, IOException {
final SAXReader reader = new SAXReader();
final Document doc = reader.read(new StringReader(xml));
doc.selectNodes("//context").forEach(this::saveContext);
}
private void saveContext(final Node node) {
final Context ctx = new Context();
setCommonInfo(ctx, node);
ctx.setType(node.valueOf("@type"));
contextRepository.save(ctx);
log.info("Saved context: " + ctx.getId());
node.selectNodes("./category").forEach(n -> saveCategory(n, ctx.getId()));
}
private void saveCategory(final Node node, final String ctxId) {
final Category cat = new Category();
setCommonInfo(cat, node);
cat.setContextId(ctxId);
categoryRepository.save(cat);
log.info("- Saved category: " + cat.getId());
node.selectNodes("./concept").forEach(n -> saveConceptLvl0(n, ctxId, cat.getId()));
}
private void saveConceptLvl0(final Node node, final String ctxId, final String catId) {
final ConceptLevel0 c0 = new ConceptLevel0();
setCommonInfo(c0, node);
c0.setContextId(ctxId);
c0.setCategoryId(catId);
conceptLevel0Repository.save(c0);
log.info("-- Saved concept 0: " + c0.getId());
node.selectNodes("./concept").forEach(n -> saveConceptLvl1(n, ctxId, catId, c0.getId()));
}
private void saveConceptLvl1(final Node node, final String ctxId, final String catId, final String c0) {
final ConceptLevel1 c1 = new ConceptLevel1();
setCommonInfo(c1, node);
c1.setContextId(ctxId);
c1.setCategoryId(catId);
c1.setConceptLevel0Id(c0);
conceptLevel1Repository.save(c1);
log.info("--- Saved concept 1: " + c1.getId());
node.selectNodes("./concept").forEach(n -> saveConceptLvl2(n, ctxId, catId, c0, c1.getId()));
}
private void saveConceptLvl2(final Node node, final String ctxId, final String catId, final String c0, final String c1) {
final ConceptLevel2 c2 = new ConceptLevel2();
setCommonInfo(c2, node);
c2.setContextId(ctxId);
c2.setCategoryId(catId);
c2.setConceptLevel0Id(c0);
c2.setConceptLevel1Id(c1);
conceptLevel2Repository.save(c2);
log.info("---- Saved concept 2: " + c2.getId());
}
private void setCommonInfo(final CtxInfo o, final Node n) {
o.setId(n.valueOf("@id"));
o.setLabel(n.valueOf("@label"));
if (o instanceof CtxInfoWithClaim) {
((CtxInfoWithClaim) o).setClaim(BooleanUtils.toBoolean(n.valueOf("@claim")));
}
o.setParameters(n.selectNodes("./param")
.stream()
.map(np -> new Parameter(np.valueOf("@name"), np.getText()))
.sorted()
.toArray(Parameter[]::new));
}
}

79
apps/dnet-is-application/src/main/java/eu/dnetlib/is/context/ContextRestController.java Normal file
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package eu.dnetlib.is.context;
import java.io.IOException;
import java.nio.charset.StandardCharsets;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import javax.servlet.http.HttpServletRequest;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.dom4j.DocumentException;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.web.bind.annotation.GetMapping;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.PostMapping;
import org.springframework.web.bind.annotation.RequestMapping;
import org.springframework.web.bind.annotation.RestController;
import eu.dnetlib.is.context.model.Category;
import eu.dnetlib.is.context.model.Context;
import eu.dnetlib.is.context.model.repository.CategoryRepository;
import eu.dnetlib.is.context.model.repository.ConceptLevel0Repository;
import eu.dnetlib.is.context.model.repository.ConceptLevel1Repository;
import eu.dnetlib.is.context.model.repository.ConceptLevel2Repository;
import eu.dnetlib.is.context.model.repository.ContextRepository;
@RestController
@RequestMapping("/api/contexts")
public class ContextRestController {
@Autowired
private ContextRepository contextRepository;
@Autowired
private CategoryRepository categoryRepository;
@Autowired
private ConceptLevel0Repository conceptLevel0Repository;
@Autowired
private ConceptLevel1Repository conceptLevel1Repository;
@Autowired
private ConceptLevel2Repository conceptLevel2Repository;
@Autowired
private ContextImporter contextImporter;
private static final Log log = LogFactory.getLog(ContextRestController.class);
@GetMapping("/")
public List<Context> listContexts() {
return contextRepository.findAll()
.stream()
.sorted((v1, v2) -> StringUtils.compareIgnoreCase(v1.getId(), v2.getId()))
.collect(Collectors.toList());
}
@GetMapping("/{ctxId}")
public Context getContext(@PathVariable final String ctxId) {
return contextRepository.getById(ctxId);
}
@GetMapping("/{ctxId}/categories")
public Iterable<Category> listCategories(@PathVariable final String ctxId) {
return categoryRepository.findByContextIdOrderById(ctxId);
}
@PostMapping(value = "/load", consumes = "text/plain")
public List<String> loadFromOldProfile(final HttpServletRequest request) throws DocumentException, IOException {
final String xml = IOUtils.toString(request.getInputStream(), StandardCharsets.UTF_8);
contextImporter.loadFromOldProfile(xml);
return Arrays.asList("Done.");
}
}

32
apps/dnet-is-application/src/main/java/eu/dnetlib/is/context/ContextUIController.java Normal file
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package eu.dnetlib.is.context;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Controller;
import org.springframework.ui.ModelMap;
import org.springframework.web.bind.annotation.GetMapping;
import org.springframework.web.bind.annotation.RequestParam;
import eu.dnetlib.is.context.model.Context;
import eu.dnetlib.is.context.model.repository.ContextRepository;
@Controller
public class ContextUIController {
@Autowired
private ContextRepository contextRepository;
@GetMapping("/contextEditor")
public void vocabularyEditor(@RequestParam final String id, final ModelMap map) {
final Context ctx = contextRepository.getById(id);
map.put("ctxId", ctx.getId());
map.put("ctxLabel", ctx.getLabel());
map.put("ctxType", ctx.getType());
map.put("ctxParams", ctx.getParameters());
}
@GetMapping("/contexts")
public void contexts(final ModelMap map) {
}
}

2
apps/dnet-is-application/src/main/java/eu/dnetlib/is/vocabulary/VocabularyRestController.java
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@ -77,8 +77,6 @@ public class VocabularyRestController extends AbstractDnetController {
final String xml = IOUtils.toString(request.getInputStream(), StandardCharsets.UTF_8);
System.out.println(xml);
final SAXReader reader = new SAXReader();
final Document doc = reader.read(new StringReader(xml));

66
apps/dnet-is-application/src/main/resources/static/js/contexts.js Normal file
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var app = angular.module('contextsApp', []);
app.controller('contextsController', function($scope, $http) {
$scope.contexts = [];
$scope.tmpCtx = {};
$scope.mode = '';
$scope.reload = function() {
$http.get('./api/contexts/?' + $.now()).then(function successCallback(res) {
$scope.contexts = res.data;
}, function errorCallback(res) {
alert('ERROR: ' + res.data.message);
});
};
$scope.prepareNewCtx = function() {
$scope.mode = 'new';
$scope.tmpCtx = {
'id' : '',
'label' : '',
'type' : '',
'parameters' : []
};
}
$scope.prepareEditCtx = function(ctx) {
$scope.mode = 'edit';
$scope.tmpCtx = angular.copy(ctx);
}
$scope.saveContext = function(ctx) {
if ($scope.mode == 'new') {
var found = false;
angular.forEach($scope.contexts, function(v) {
if (ctx.id == ctx.id) { found = true; };
});
if (found) {
alert("Insertion failed: context already exists !");
return;
}
}
$http.defaults.headers.post["Content-Type"] = "application/json;charset=UTF-8";
$http.post('./api/contexts/?' + $.now(), ctx).then(function successCallback(res) {
$scope.contexts = res.data;
alert("Context saved");
}, function errorCallback(res) {
alert('ERROR: ' + res.data.message);
});
};
$scope.deleteContext = function(id) {
if (confirm("Are you sure ?")) {
$http.delete('./api/contexts/' + encodeURIComponent(id) + '?' + $.now()).then(function successCallback(res) {
$scope.contexts = res.data;
alert("Context deleted");
}, function errorCallback(res) {
alert('ERROR: ' + res.data.message);
});
}
};
$scope.reload();
});

126
apps/dnet-is-application/src/main/resources/templates/contexts.html Normal file
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<!DOCTYPE html>
<html>
<head th:replace="fragments/mainParts.html :: htmlHeader('Contexts')"></head>
<body ng-app="contextsApp" ng-controller="contextsController">
<nav th:replace="fragments/mainParts.html :: mainMenu('Contexts')"></nav>
<div class="container-fluid">
<div class="row">
<div class="col">
<p>
<button class="btn btn-sm btn-primary" data-toggle="modal" data-target="#editContextModal" ng-click="prepareNewCtx()">create a new context</button>
</p>
<p ng-show="contexts.length > 0">
<input type="text" class="form-control form-control-sm" ng-model="ctxFilter" placeholder="Filter..."/>
</p>
<p>
<span class="text-muted"><b>Number of contexts:</b> {{(contexts | filter:ctxFilter).length}}</span>
</p>
<table class="table table-sm table-striped">
<thead>
<tr>
<th style="width: 20%">ID</th>
<th style="width: 30%">Label</th>
<th style="width: 10%">Type</th>
<th></th>
</tr>
</thead>
<tbody>
<tr ng-show="(contexts|filter:ctxFilter).length == 0">
<td colspan="4" class="text-muted">no contexts</td>
</tr>
<tr ng-repeat="ctx in contexts|filter:ctxFilter">
<th><a href="contextEditor?id={{ctx.id}}">{{ctx.id}}</a></th>
<td>{{ctx.label}}</td>
<td>{{ctx.type}}</td>
<td align="right">
<button type="button" class="btn btn-sm btn-primary" data-toggle="modal" data-target="#editContextModal" ng-click="prepareEditCtx(ctx)" >edit</button>
<button type="button" class="btn btn-sm btn-danger" ng-click="deleteContext(ctx.id)">delete</button>
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<!-- Modals -->
<div class="modal fade" tabindex="-1" id="editContextModal">
<div class="modal-dialog modal-xl">
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" ng-if="mode == 'new'">New context</h4>
<h4 class="modal-title" ng-if="mode == 'edit'">Edit context</h4>
<button type="button" class="close" data-dismiss="modal">&times;</button>
</div>
<div class="modal-body">
<form>
<div class="form-group">
<label>ID</label>
<input ng-show="mode == 'new'" type="text" class="form-control" ng-model="tmpCtx.id" />
<input ng-show="mode == 'edit'" type="text" readonly class="form-control-plaintext" ng-model="tmpCtx.id" />
</div>
<div class="form-group">
<label>Label</label>
<input type="text" class="form-control" ng-model="tmpCtx.label" />
</div>
<div class="form-group">
<label>Type</label>
<input type="text" class="form-control" ng-model="tmpCtx.type" />
</div>
<div class="form-group">
<table class="table table-sm table-striped" style="table-layout: fixed;">
<thead>
<tr>
<th style="width: 20%">Parameter Name</th>
<th style="width: 75%">Parameter Value</th>
<th></th>
</tr>
</thead>
<tbody>
<tr ng-show="tmpCtx.parameters.length == 0">
<td colspan="3">0 parameter(s)</td>
</tr>
<tr ng-repeat="p in tmpCtx.parameters">
<th>{{p.name}}</th>
<td><textarea class="form-control" ng-model="p.value"></textarea></td>
<td align="right"><button class="btn btn-sm btn-danger" type="button" ng-click="tmpCtx.parameters.splice($index, 1)"><i class="fa fa-trash"></i></button></td>
</tr>
</tbody>
<tfoot>
<tr ng-init="newParamName=newParamValue=''">
<td><input type="text" class="form-control form-control-sm" placeholder="new param name..." ng-model="newParamName" /></td>
<td><textarea class="form-control form-control-sm" placeholder="new param value..." ng-model="newParamValue"></textarea></td>
<td align="right">
<button type="button" class="btn btn-sm btn-outline-success"
ng-click="tmpCtx.parameters.push({'name': newParamName, 'value': newParamValue}); newParamName=newParamValue=''"
ng-disabled="!newParamValue || !newParamValue">
<i class="fa fa-plus"></i>
</button>
</td>
</tr>
</tfoot>
</table>
</div>
</form>
</div>
<div class="modal-footer">
<button type="button" class="btn btn-sm btn-secondary" data-dismiss="modal">Close</button>
<button type="submit" class="btn btn-sm btn-primary" data-dismiss="modal" ng-click="saveContext(tmpCtx)" ng-disabled="!tmpCtx.id || !tmpCtx.label || !tmpCtx.type">Submit</button>
</div>
</div>
</div>
</div>
</body>
<th:block th:replace="fragments/mainParts.html :: scripts"></th:block>
<script src="js/contexts.js"></script>
</html>

2
apps/dnet-is-application/src/main/resources/templates/fragments/mainParts.html
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@ -7,7 +7,7 @@
<link rel="stylesheet" href="common/css/fontawesome-all.min.css" />
<style>
td {
td,th {
vertical-align: middle !important;
}
label {

42
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/Category.java Normal file
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package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.IdClass;
import javax.persistence.Table;
@Entity
@Table(name = "context_categories")
@IdClass(CategoryPK.class)
public class Category extends CtxInfoWithClaim {
private static final long serialVersionUID = -1847175903793410585L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "ctx_id")
private String contextId;
@Override
public String getId() {
return id;
}
@Override
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
}

48
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/CategoryPK.java Normal file
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package eu.dnetlib.is.context.model;
import java.io.Serializable;
import java.util.Objects;
public class CategoryPK implements Serializable {
private static final long serialVersionUID = -2764222393730200265L;
private String id;
private String contextId;
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
@Override
public int hashCode() {
return Objects.hash(contextId, id);
}
@Override
public boolean equals(final Object obj) {
if (this == obj) { return true; }
if (!(obj instanceof CategoryPK)) { return false; }
final CategoryPK other = (CategoryPK) obj;
return Objects.equals(contextId, other.contextId) && Objects.equals(id, other.id);
}
@Override
public String toString() {
return String.format("CategoryPK [id=%s, contextId=%s]", id, contextId);
}
}

53
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel0.java Normal file
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package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.IdClass;
import javax.persistence.Table;
@Entity
@Table(name = "context_cat_concepts_lvl_0")
@IdClass(ConceptLevel0PK.class)
public class ConceptLevel0 extends CtxInfoWithClaim {
private static final long serialVersionUID = -4775331902088912839L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "ctx_id")
private String contextId;
@Id
@Column(name = "cat_id")
private String categoryId;
@Override
public String getId() {
return id;
}
@Override
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
}

57
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel0PK.java Normal file
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package eu.dnetlib.is.context.model;
import java.io.Serializable;
import java.util.Objects;
public class ConceptLevel0PK implements Serializable {
private static final long serialVersionUID = -924956037443869537L;
private String id;
private String contextId;
private String categoryId;
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
@Override
public int hashCode() {
return Objects.hash(categoryId, contextId, id);
}
@Override
public boolean equals(final Object obj) {
if (this == obj) { return true; }
if (!(obj instanceof ConceptLevel0PK)) { return false; }
final ConceptLevel0PK other = (ConceptLevel0PK) obj;
return Objects.equals(categoryId, other.categoryId) && Objects.equals(contextId, other.contextId) && Objects.equals(id, other.id);
}
@Override
public String toString() {
return String.format("ConceptLevel0PK [id=%s, contextId=%s, categoryId=%s]", id, contextId, categoryId);
}
}

66
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel1.java Normal file
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package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.IdClass;
import javax.persistence.Table;
@Entity
@Table(name = "context_cat_concepts_lvl_1")
@IdClass(ConceptLevel1PK.class)
public class ConceptLevel1 extends CtxInfoWithClaim {
private static final long serialVersionUID = -759398689766245784L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "ctx_id")
private String contextId;
@Id
@Column(name = "cat_id")
private String categoryId;
@Id
@Column(name = "c0_id")
private String conceptLevel0Id;
@Override
public String getId() {
return id;
}
@Override
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
public String getConceptLevel0Id() {
return conceptLevel0Id;
}
public void setConceptLevel0Id(final String conceptLevel0Id) {
this.conceptLevel0Id = conceptLevel0Id;
};
}

68
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel1PK.java Normal file
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package eu.dnetlib.is.context.model;
import java.io.Serializable;
import java.util.Objects;
public class ConceptLevel1PK implements Serializable {
private static final long serialVersionUID = -7993480292203819163L;
private String id;
private String contextId;
private String categoryId;
private String conceptLevel0Id;
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
public String getConceptLevel0Id() {
return conceptLevel0Id;
}
public void setConceptLevel0Id(final String conceptLevel0Id) {
this.conceptLevel0Id = conceptLevel0Id;
}
@Override
public int hashCode() {
return Objects.hash(categoryId, conceptLevel0Id, contextId, id);
}
@Override
public boolean equals(final Object obj) {
if (this == obj) { return true; }
if (!(obj instanceof ConceptLevel1PK)) { return false; }
final ConceptLevel1PK other = (ConceptLevel1PK) obj;
return Objects.equals(categoryId, other.categoryId) && Objects.equals(conceptLevel0Id, other.conceptLevel0Id)
&& Objects.equals(contextId, other.contextId) && Objects.equals(id, other.id);
}
@Override
public String toString() {
return String.format("ConceptLevel1PK [id=%s, contextId=%s, categoryId=%s, conceptLevel0Id=%s]", id, contextId, categoryId, conceptLevel0Id);
}
}

77
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel2.java Normal file
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package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.IdClass;
import javax.persistence.Table;
@Entity
@Table(name = "context_cat_concepts_lvl_2")
@IdClass(ConceptLevel2PK.class)
public class ConceptLevel2 extends CtxInfoWithClaim {
private static final long serialVersionUID = 906131339592862096L;
@Id
@Column(name = "id")
private String id;
@Id
@Column(name = "ctx_id")
private String contextId;
@Id
@Column(name = "cat_id")
private String categoryId;
@Id
@Column(name = "c0_id")
private String conceptLevel0Id;
@Id
@Column(name = "c1_id")
private String conceptLevel1Id;
@Override
public String getId() {
return id;
}
@Override
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
public String getConceptLevel0Id() {
return conceptLevel0Id;
}
public void setConceptLevel0Id(final String conceptLevel0Id) {
this.conceptLevel0Id = conceptLevel0Id;
}
public String getConceptLevel1Id() {
return conceptLevel1Id;
}
public void setConceptLevel1Id(final String conceptLevel1Id) {
this.conceptLevel1Id = conceptLevel1Id;
}
}

79
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/ConceptLevel2PK.java Normal file
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@ -0,0 +1,79 @@
package eu.dnetlib.is.context.model;
import java.io.Serializable;
import java.util.Objects;
public class ConceptLevel2PK implements Serializable {
private static final long serialVersionUID = -5543486531261862945L;
private String id;
private String contextId;
private String categoryId;
private String conceptLevel0Id;
private String conceptLevel1Id;
public String getId() {
return id;
}
public void setId(final String id) {
this.id = id;
}
public String getContextId() {
return contextId;
}
public void setContextId(final String contextId) {
this.contextId = contextId;
}
public String getCategoryId() {
return categoryId;
}
public void setCategoryId(final String categoryId) {
this.categoryId = categoryId;
}
public String getConceptLevel0Id() {
return conceptLevel0Id;
}
public void setConceptLevel0Id(final String conceptLevel0Id) {
this.conceptLevel0Id = conceptLevel0Id;
}
public String getConceptLevel1Id() {
return conceptLevel1Id;
}
public void setConceptLevel1Id(final String conceptLevel1Id) {
this.conceptLevel1Id = conceptLevel1Id;
}
@Override
public int hashCode() {
return Objects.hash(categoryId, conceptLevel0Id, conceptLevel1Id, contextId, id);
}
@Override
public boolean equals(final Object obj) {
if (this == obj) { return true; }
if (!(obj instanceof ConceptLevel2PK)) { return false; }
final ConceptLevel2PK other = (ConceptLevel2PK) obj;
return Objects.equals(categoryId, other.categoryId) && Objects.equals(conceptLevel0Id, other.conceptLevel0Id)
&& Objects.equals(conceptLevel1Id, other.conceptLevel1Id) && Objects.equals(contextId, other.contextId) && Objects.equals(id, other.id);
}
@Override
public String toString() {
return String
.format("ConceptLevel2PK [id=%s, contextId=%s, categoryId=%s, conceptLevel0Id=%s, conceptLevel1Id=%s]", id, contextId, categoryId, conceptLevel0Id, conceptLevel1Id);
}
}

42
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/Context.java Normal file
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@ -0,0 +1,42 @@
package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.Table;
@Entity
@Table(name = "contexts")
public class Context extends CtxInfo {
private static final long serialVersionUID = -8290775989306039922L;
@Id
@Column(name = "id")
private String id;
@Column(name = "type")
private String type;
@Override
public String getId() {
return id;
}
@Override
public void setId(final String id) {
this.id = id;
}
public String getType() {
return type;
}
public void setType(final String type) {
this.type = type;
}
public static long getSerialversionuid() {
return serialVersionUID;
}
}

51
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/CtxInfo.java Normal file
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@ -0,0 +1,51 @@
package eu.dnetlib.is.context.model;
import java.io.Serializable;
import javax.persistence.Column;
import javax.persistence.MappedSuperclass;
import org.hibernate.annotations.Type;
import org.hibernate.annotations.TypeDef;
import org.hibernate.annotations.TypeDefs;
import com.vladmihalcea.hibernate.type.json.JsonBinaryType;
import com.vladmihalcea.hibernate.type.json.JsonStringType;
@MappedSuperclass
@TypeDefs({
@TypeDef(name = "json", typeClass = JsonStringType.class),
@TypeDef(name = "jsonb", typeClass = JsonBinaryType.class)
})
public abstract class CtxInfo implements Serializable {
private static final long serialVersionUID = 4912082158208138795L;
@Column(name = "label")
private String label;
@Type(type = "jsonb")
@Column(name = "params")
private Parameter[] parameters;
abstract public String getId();
abstract public void setId(final String id);
public String getLabel() {
return label;
}
public void setLabel(final String label) {
this.label = label;
}
public Parameter[] getParameters() {
return parameters;
}
public void setParameters(final Parameter[] parameters) {
this.parameters = parameters;
}
}

22
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/CtxInfoWithClaim.java Normal file
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@ -0,0 +1,22 @@
package eu.dnetlib.is.context.model;
import javax.persistence.Column;
import javax.persistence.MappedSuperclass;
@MappedSuperclass
public abstract class CtxInfoWithClaim extends CtxInfo {
private static final long serialVersionUID = -9005145235908917048L;
@Column(name = "claim")
private boolean claim;
public boolean isClaim() {
return claim;
}
public void setClaim(final boolean claim) {
this.claim = claim;
}
}

61
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/Parameter.java Normal file
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@ -0,0 +1,61 @@
package eu.dnetlib.is.context.model;
import java.io.Serializable;
import java.util.Objects;
import org.apache.commons.lang3.StringUtils;
public class Parameter implements Serializable, Comparable<Parameter> {
private static final long serialVersionUID = 925189891223642100L;
private String name;
private String value;
public Parameter() {}
public Parameter(final String name, final String value) {
this.name = name;
this.value = value;
}
public String getName() {
return name;
}
public void setName(final String name) {
this.name = name;
}
public String getValue() {
return value;
}
public void setValue(final String value) {
this.value = value;
}
@Override
public int hashCode() {
return Objects.hash(name, value);
}
@Override
public boolean equals(final Object obj) {
if (this == obj) { return true; }
if (!(obj instanceof Parameter)) { return false; }
final Parameter other = (Parameter) obj;
return Objects.equals(name, other.name) && Objects.equals(value, other.value);
}
@Override
public String toString() {
return String.format("Parameter [name=%s, value=%s]", name, value);
}
@Override
public int compareTo(final Parameter p) {
return StringUtils.compare(getName(), p.getName());
}
}

11
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/repository/CategoryRepository.java Normal file
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@ -0,0 +1,11 @@
package eu.dnetlib.is.context.model.repository;
import org.springframework.data.jpa.repository.JpaRepository;
import eu.dnetlib.is.context.model.Category;
import eu.dnetlib.is.context.model.CategoryPK;
public interface CategoryRepository extends JpaRepository<Category, CategoryPK> {
Iterable<Category> findByContextIdOrderById(String contextId);
}

10
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/repository/ConceptLevel0Repository.java Normal file
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@ -0,0 +1,10 @@
package eu.dnetlib.is.context.model.repository;
import org.springframework.data.jpa.repository.JpaRepository;
import eu.dnetlib.is.context.model.ConceptLevel0;
import eu.dnetlib.is.context.model.ConceptLevel0PK;
public interface ConceptLevel0Repository extends JpaRepository<ConceptLevel0, ConceptLevel0PK> {
}

10
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/repository/ConceptLevel1Repository.java Normal file
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@ -0,0 +1,10 @@
package eu.dnetlib.is.context.model.repository;
import org.springframework.data.jpa.repository.JpaRepository;
import eu.dnetlib.is.context.model.ConceptLevel1;
import eu.dnetlib.is.context.model.ConceptLevel1PK;
public interface ConceptLevel1Repository extends JpaRepository<ConceptLevel1, ConceptLevel1PK> {
}

10
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/repository/ConceptLevel2Repository.java Normal file
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@ -0,0 +1,10 @@
package eu.dnetlib.is.context.model.repository;
import org.springframework.data.jpa.repository.JpaRepository;
import eu.dnetlib.is.context.model.ConceptLevel2;
import eu.dnetlib.is.context.model.ConceptLevel2PK;
public interface ConceptLevel2Repository extends JpaRepository<ConceptLevel2, ConceptLevel2PK> {
}

9
libs/dnet-is-common/src/main/java/eu/dnetlib/is/context/model/repository/ContextRepository.java Normal file
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@ -0,0 +1,9 @@
package eu.dnetlib.is.context.model.repository;
import org.springframework.data.jpa.repository.JpaRepository;
import eu.dnetlib.is.context.model.Context;
public interface ContextRepository extends JpaRepository<Context, String> {
}

62
libs/dnet-is-common/src/main/resources/sql/schema.sql
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@ -1,3 +1,5 @@
-- Vocabularies
CREATE TABLE vocabularies (
id text PRIMARY KEY,
name text NOT NULL,
@ -14,3 +16,63 @@ CREATE TABLE vocabulary_terms (
);
CREATE INDEX ON vocabulary_terms (vocabulary);
-- Contexts
CREATE TABLE contexts (
id text PRIMARY KEY,
label text NOT NULL,
type text NOT NULL,
params jsonb
);
CREATE TABLE context_categories (
ctx_id text NOT NULL REFERENCES contexts(id) ON UPDATE CASCADE ON DELETE CASCADE,
id text NOT NULL,
label text NOT NULL,
claim boolean NOT NULL,
params jsonb,
PRIMARY KEY (ctx_id, id)
);
CREATE TABLE context_cat_concepts_lvl_0 (
ctx_id text NOT NULL REFERENCES contexts(id) ON UPDATE CASCADE ON DELETE CASCADE,
cat_id text NOT NULL,
id text NOT NULL,
label text NOT NULL,
claim boolean NOT NULL,
params jsonb,
PRIMARY KEY (ctx_id, cat_id, id),
FOREIGN KEY (ctx_id, cat_id) REFERENCES context_categories(ctx_id, id) ON UPDATE CASCADE ON DELETE CASCADE
);
CREATE TABLE context_cat_concepts_lvl_1 (
ctx_id text NOT NULL REFERENCES contexts(id) ON UPDATE CASCADE ON DELETE CASCADE,
cat_id text NOT NULL,
c0_id text NOT NULL,
id text NOT NULL,
label text NOT NULL,
claim boolean NOT NULL,
params jsonb,
PRIMARY KEY (ctx_id, cat_id, c0_id, id),
FOREIGN KEY (ctx_id, cat_id, c0_id) REFERENCES context_cat_concepts_lvl_0(ctx_id, cat_id, id) ON UPDATE CASCADE ON DELETE CASCADE
);
CREATE TABLE context_cat_concepts_lvl_2 (
ctx_id text NOT NULL REFERENCES contexts(id) ON UPDATE CASCADE ON DELETE CASCADE,
cat_id text NOT NULL,
c0_id text NOT NULL,
c1_id text NOT NULL,
id text NOT NULL,
label text NOT NULL,
claim boolean NOT NULL,
params jsonb,
PRIMARY KEY (ctx_id, cat_id, c0_id, c1_id, id),
FOREIGN KEY (ctx_id, cat_id, c0_id, c1_id) REFERENCES context_cat_concepts_lvl_1(ctx_id, cat_id, c0_id, id) ON UPDATE CASCADE ON DELETE CASCADE
);
CREATE INDEX ON context_categories (ctx_id);
CREATE INDEX ON context_cat_concepts_lvl_0 (ctx_id, cat_id);
CREATE INDEX ON context_cat_concepts_lvl_1 (ctx_id, cat_id, c0_id);
CREATE INDEX ON context_cat_concepts_lvl_2 (ctx_id, cat_id, c0_id, c1_id);