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107 changed files with 3041 additions and 3080 deletions

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@ -4,9 +4,6 @@
| **Version** | **Changes** | **Readiness** |
|-------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------|
| 6.1.1 | [Graph model] </br> <ul><li>Introduced constants used in the DOIBoost dismission.</li></ul> | beta |
| 6.1.0 | [Graph model] </br> <ul><li>Introduced model classes to provide a JSON representation of records embedding information from the related entities.</li></ul> | beta |
| 5.17.3 | [Graph model] </br> <ul><li>added result level textual field to store the transformative agreement information.</li></ul> | beta |
| 4.17.3 | [Graph model] </br> <ul><li>moved context at the level of the entity. </li></ul> | beta |
| 4.17.2 | [Graph model] </br> <ul><li>added InstaceTypeMapping field on the instance level.</li><li>new result level fields to support the activities in the Irish tender `isGreen`, `openAccessColor`, `isInDiamondJournal`, `publiclyFunded`</li><ul> | production |
| 3.17.1 | [Graph model] </br> <ul><li>added fulltext field on the instance level.</li><li>added extra organization specific PID types</li><ul> | production |

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@ -13,11 +13,9 @@ This project defines **object schemas** of the OpenAIRE main entities and the re
Namely it defines the model for
- the graph internal representation, defined under the package `eu.dnetlib.dhp.schema.oaf`
- the public graph dump representations, defined under the package `eu.dnetlib.dhp.schema.dump.oaf`
- the scholexplorer content representation, defined under the package `eu.dnetlib.dhp.schema.sx`
- the contents acquired from the metadata aggregation subsystem, defined under the package `eu.dnetlib.dhp.schema.mdstore`
- the contents acquired from the netadata aggregation subsystem, defined under the package `eu.dnetlib.dhp.schema.mdstore`
- the ORCID common schemas, defined under the package `eu.dnetlib.dhp.schema.orcid`
- the Solr common schemas used to represent the information returned to the Explore portal and the APIs, defined under
the package `eu.dnetlib.dhp.schema.solr`
The serialization of such objects (data store files) are used to pass data between workflow nodes in the processing pipeline
and / or intended to be shared across components.
Te serialization of such objects (data store files) are used to pass data between workflow nodes in the processing pipeline.

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@ -5,7 +5,7 @@
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-schemas</artifactId>
<packaging>jar</packaging>
<version>6.1.3-SNAPSHOT</version>
<version>4.17.4-SNAPSHOT</version>
<licenses>
<license>

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@ -16,9 +16,6 @@ public class ModelConstants {
public static final String ORCID_DS = ORCID.toUpperCase();
public static final String CROSSREF_ID = "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2";
public static final String MAG_ID ="10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a";
public static final String DATACITE_ID = "10|openaire____::9e3be59865b2c1c335d32dae2fe7b254";
public static final String ZENODO_OD_ID = "10|opendoar____::358aee4cc897452c00244351e4d91f69";
@ -30,7 +27,6 @@ public class ModelConstants {
public static final String ROHUB_ID = "10|fairsharing_::1b69ebedb522700034547abc5652ffac";
public static final String OPENORGS_NAME = "OpenOrgs Database";
public static final String MAG_NAME = "Microsoft Academic Graph";
public static final String OPENOCITATIONS_NAME = "OpenCitations";
public static final String OPENOCITATIONS_ID = "10|openaire____::c06df618c5de1c786535ccf3f8b7b059";
@ -223,11 +219,6 @@ public class ModelConstants {
public static final Qualifier MAIN_TITLE_QUALIFIER = qualifier(
"main title", "main title", DNET_DATACITE_TITLE, DNET_DATACITE_TITLE);
public static final Qualifier ALTERNATIVE_TITLE_QUALIFIER = qualifier(
"alternative title", "alternative title", DNET_DATACITE_TITLE, DNET_DATACITE_TITLE);
public static final Qualifier SUBTITLE_QUALIFIER = qualifier(
"subtitle", "subtitle", DNET_DATACITE_TITLE, DNET_DATACITE_TITLE);
public static final AccessRight OPEN_ACCESS_RIGHT() {
final AccessRight result = new AccessRight();

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@ -1,7 +1,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.util.Objects;
import java.util.Optional;
/**
@ -9,7 +8,6 @@ import java.util.Optional;
*/
public class AccessRight extends Qualifier {
private static final long serialVersionUID = -8945177777173510134L;
private OpenAccessRoute openAccessRoute;
public OpenAccessRoute getOpenAccessRoute() {
@ -20,4 +18,32 @@ public class AccessRight extends Qualifier {
this.openAccessRoute = openAccessRoute;
}
@Override
public String toComparableString() {
String s = super.toComparableString();
return Optional
.ofNullable(getOpenAccessRoute())
.map(x -> s + "::" + x)
.orElse(s);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Qualifier other = (Qualifier) obj;
return toComparableString().equals(other.toComparableString());
}
}

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@ -6,7 +6,6 @@ import java.util.*;
public class Author implements Serializable {
private static final long serialVersionUID = 1625492739044457437L;
private String fullname;
private String name;
@ -68,4 +67,24 @@ public class Author implements Serializable {
this.affiliation = affiliation;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Author author = (Author) o;
return Objects.equals(fullname, author.fullname)
&& Objects.equals(name, author.name)
&& Objects.equals(surname, author.surname)
&& Objects.equals(rank, author.rank)
&& Objects.equals(pid, author.pid)
&& Objects.equals(affiliation, author.affiliation);
}
@Override
public int hashCode() {
return Objects.hash(fullname, name, surname, rank, pid, affiliation);
}
}

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@ -3,11 +3,8 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class Context implements Serializable {
private static final long serialVersionUID = -778899398223144398L;
private String id;
private List<DataInfo> dataInfo;
@ -28,4 +25,22 @@ public class Context implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public int hashCode() {
return id == null ? 0 : id.hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Context other = (Context) obj;
return id.equals(other.getId());
}
}

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@ -1,9 +1,10 @@
package eu.dnetlib.dhp.schema.oaf;
import java.util.Objects;
public class Country extends Qualifier {
private static final long serialVersionUID = 1587334433446567175L;
private DataInfo dataInfo;
public DataInfo getDataInfo() {
@ -14,4 +15,20 @@ public class Country extends Qualifier {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
return false;
Country country = (Country) o;
return Objects.equals(dataInfo, country.dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), dataInfo);
}
}

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@ -6,8 +6,6 @@ import java.util.Objects;
public class DataInfo implements Serializable {
private static final long serialVersionUID = -277099962930866451L;
private Boolean invisible = false;
private Boolean inferred;
private Boolean deletedbyinference = false;
@ -63,4 +61,25 @@ public class DataInfo implements Serializable {
this.provenanceaction = provenanceaction;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
DataInfo dataInfo = (DataInfo) o;
return Objects.equals(invisible, dataInfo.invisible)
&& Objects.equals(inferred, dataInfo.inferred)
&& Objects.equals(deletedbyinference, dataInfo.deletedbyinference)
&& Objects.equals(trust, dataInfo.trust)
&& Objects.equals(inferenceprovenance, dataInfo.inferenceprovenance)
&& Objects.equals(provenanceaction, dataInfo.provenanceaction);
}
@Override
public int hashCode() {
return Objects
.hash(
invisible, inferred, deletedbyinference, trust, inferenceprovenance, provenanceaction);
}
}

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@ -8,7 +8,6 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Dataset extends Result implements Serializable {
private static final long serialVersionUID = 916526716184645549L;
private Field<String> storagedate;
// candidate for removal
@ -84,4 +83,34 @@ public class Dataset extends Result implements Serializable {
this.geolocation = geolocation;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Dataset.class.isAssignableFrom(e.getClass())) {
return;
}
final Dataset d = (Dataset) e;
storagedate = d.getStoragedate() != null && compareTrust(this, e) < 0 ? d.getStoragedate() : storagedate;
device = d.getDevice() != null && compareTrust(this, e) < 0 ? d.getDevice() : device;
size = d.getSize() != null && compareTrust(this, e) < 0 ? d.getSize() : size;
version = d.getVersion() != null && compareTrust(this, e) < 0 ? d.getVersion() : version;
lastmetadataupdate = d.getLastmetadataupdate() != null && compareTrust(this, e) < 0
? d.getLastmetadataupdate()
: lastmetadataupdate;
metadataversionnumber = d.getMetadataversionnumber() != null && compareTrust(this, e) < 0
? d.getMetadataversionnumber()
: metadataversionnumber;
geolocation = mergeLists(geolocation, d.getGeolocation());
mergeOAFDataInfo(d);
}
}

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@ -6,6 +6,9 @@ import java.util.List;
public class Datasource extends OafEntity implements Serializable {
/**
*
*/
private static final long serialVersionUID = 1019089598408414496L;
@Deprecated
@ -563,4 +566,9 @@ public class Datasource extends OafEntity implements Serializable {
this.eoscifguidelines = eoscifguidelines;
}
@Override
public void mergeFrom(final OafEntity e) {
super.mergeFrom(e);
}
}

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@ -1,7 +1,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -13,7 +12,6 @@ import org.apache.commons.lang3.StringUtils;
*/
public class EoscIfGuidelines implements Serializable {
private static final long serialVersionUID = -2166497471601245048L;
/**
* EOSC-IF local code. Later on it could be populated with a PID (e.g. DOI), but for the time being we stick to
* a more loose definition.
@ -67,4 +65,33 @@ public class EoscIfGuidelines implements Serializable {
this.semanticRelation = semanticRelation;
}
private String toComparableString() {
return Stream
.of(
Optional.ofNullable(getCode()).orElse(""),
Optional.ofNullable(getLabel()).orElse(""),
Optional.ofNullable(getUrl()).orElse(""),
Optional.ofNullable(getSemanticRelation()).orElse(""))
.filter(StringUtils::isNotBlank)
.collect(Collectors.joining("||"));
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
EoscIfGuidelines other = (EoscIfGuidelines) obj;
return toComparableString().equals(other.toComparableString());
}
}

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@ -6,8 +6,6 @@ import java.util.List;
import java.util.Objects;
public class ExternalReference implements Serializable {
private static final long serialVersionUID = -3711445600549155961L;
// source
private String sitename;
@ -96,4 +94,27 @@ public class ExternalReference implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExternalReference that = (ExternalReference) o;
return Objects.equals(sitename, that.sitename)
&& Objects.equals(label, that.label)
&& Objects.equals(url, that.url)
&& Objects.equals(qualifier, that.qualifier)
&& Objects.equals(refidentifier, that.refidentifier)
&& Objects.equals(query, that.query)
&& Objects.equals(dataInfo, that.dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
sitename, label, url, qualifier, refidentifier, query, dataInfo);
}
}

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@ -5,8 +5,6 @@ import java.io.Serializable;
import java.util.Objects;
public class ExtraInfo implements Serializable {
private static final long serialVersionUID = 8689244676887698486L;
private String name;
private String typology;
@ -58,4 +56,22 @@ public class ExtraInfo implements Serializable {
this.value = value;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExtraInfo extraInfo = (ExtraInfo) o;
return Objects.equals(name, extraInfo.name)
&& Objects.equals(typology, extraInfo.typology)
&& Objects.equals(provenance, extraInfo.provenance)
&& Objects.equals(trust, extraInfo.trust)
&& Objects.equals(value, extraInfo.value);
}
@Override
public int hashCode() {
return Objects.hash(name, typology, provenance, trust, value);
}
}

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@ -6,7 +6,6 @@ import java.util.Objects;
public class Field<T> implements Serializable {
private static final long serialVersionUID = -4255501306375330131L;
private T value;
private DataInfo dataInfo;

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@ -2,7 +2,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import org.apache.commons.lang3.StringUtils;
@ -10,7 +9,6 @@ import com.fasterxml.jackson.annotation.JsonIgnore;
public class GeoLocation implements Serializable {
private static final long serialVersionUID = 8096534610208458404L;
private String point;
private String box;
@ -41,4 +39,38 @@ public class GeoLocation implements Serializable {
this.place = place;
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(point) && StringUtils.isBlank(box) && StringUtils.isBlank(place);
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s%s",
point != null ? point.toLowerCase() : "",
box != null ? box.toLowerCase() : "",
place != null ? place.toLowerCase() : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
GeoLocation other = (GeoLocation) obj;
return toComparableString().equals(other.toComparableString());
}
}

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@ -21,9 +21,8 @@ import java.util.Objects;
* - private String level3 to store the information about the level3 of the classification
* - private String classification to store the entire classification related to the programme
*/
public class H2020Classification implements Serializable {
private static final long serialVersionUID = 1062734689288369769L;
public class H2020Classification implements Serializable {
private H2020Programme h2020Programme;
private String level1;
private String level2;
@ -71,4 +70,19 @@ public class H2020Classification implements Serializable {
this.classification = classification;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
H2020Classification h2020classification = (H2020Classification) o;
return Objects.equals(level1, h2020classification.level1) &&
Objects.equals(level2, h2020classification.level2) &&
Objects.equals(level3, h2020classification.level3) &&
Objects.equals(classification, h2020classification.classification) &&
h2020Programme.equals(h2020classification.h2020Programme);
}
}

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@ -9,9 +9,8 @@ import java.util.Objects;
* - private String code to store the code of the programme
* - private String description to store the description of the programme
*/
public class H2020Programme implements Serializable {
private static final long serialVersionUID = -7851791644568592481L;
public class H2020Programme implements Serializable {
private String code;
private String description;
@ -31,4 +30,15 @@ public class H2020Programme implements Serializable {
this.description = description;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
H2020Programme h2020Programme = (H2020Programme) o;
return Objects.equals(code, h2020Programme.code);
}
}

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@ -3,13 +3,9 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Optional;
import com.google.common.base.Joiner;
public class Instance implements Serializable {
private static final long serialVersionUID = 3918544870298859300L;
private Field<String> license;
private AccessRight accessright;
@ -178,4 +174,33 @@ public class Instance implements Serializable {
this.fulltext = fulltext;
}
public String toComparableString() {
return String
.format(
"%s::%s::%s::%s",
hostedby != null && hostedby.getKey() != null ? hostedby.getKey().toLowerCase() : "",
accessright != null && accessright.getClassid() != null ? accessright.getClassid() : "",
instancetype != null && instancetype.getClassid() != null ? instancetype.getClassid() : "",
url != null ? url : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Instance other = (Instance) obj;
return toComparableString().equals(other.toComparableString());
}
}

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@ -7,7 +7,6 @@ import java.io.Serializable;
*/
public class InstanceTypeMapping implements Serializable {
private static final long serialVersionUID = -8209930054790495309L;
/**
* Original resource type, typically mapped from dc:type, datacite:resourceType.
*/

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@ -6,8 +6,6 @@ import java.util.Objects;
public class Journal implements Serializable {
private static final long serialVersionUID = -8476321782780781681L;
private String name;
private String issnPrinted;
@ -128,4 +126,42 @@ public class Journal implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Journal journal = (Journal) o;
return Objects.equals(name, journal.name)
&& Objects.equals(issnPrinted, journal.issnPrinted)
&& Objects.equals(issnOnline, journal.issnOnline)
&& Objects.equals(issnLinking, journal.issnLinking)
&& Objects.equals(ep, journal.ep)
&& Objects.equals(iss, journal.iss)
&& Objects.equals(sp, journal.sp)
&& Objects.equals(vol, journal.vol)
&& Objects.equals(edition, journal.edition)
&& Objects.equals(conferenceplace, journal.conferenceplace)
&& Objects.equals(conferencedate, journal.conferencedate)
&& Objects.equals(dataInfo, journal.dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
name,
issnPrinted,
issnOnline,
issnLinking,
ep,
iss,
sp,
vol,
edition,
conferenceplace,
conferencedate,
dataInfo);
}
}

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@ -2,17 +2,13 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.google.common.base.Joiner;
public class KeyValue implements Serializable {
private static final long serialVersionUID = 1905267445569591240L;
private String key;
private String value;
@ -43,4 +39,36 @@ public class KeyValue implements Serializable {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s",
key != null ? key.toLowerCase() : "", value != null ? value.toLowerCase() : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(key) && StringUtils.isBlank(value);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
KeyValue other = (KeyValue) obj;
return toComparableString().equals(other.toComparableString());
}
}

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@ -11,7 +11,6 @@ import com.google.common.base.Objects;
*/
public class Measure implements Serializable {
private static final long serialVersionUID = 8383308453679722661L;
/**
* Unique measure identifier.
*/
@ -39,4 +38,23 @@ public class Measure implements Serializable {
this.unit = unit;
}
public void mergeFrom(Measure m) {
// TODO
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Measure measure = (Measure) o;
return Objects.equal(id, measure.id) &&
Objects.equal(unit, measure.unit);
}
@Override
public int hashCode() {
return Objects.hashCode(id, unit);
}
}

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@ -6,8 +6,6 @@ import java.util.Objects;
public class OAIProvenance implements Serializable {
private static final long serialVersionUID = -767252660700352729L;
private OriginDescription originDescription;
public OriginDescription getOriginDescription() {
@ -18,4 +16,18 @@ public class OAIProvenance implements Serializable {
this.originDescription = originDescription;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OAIProvenance that = (OAIProvenance) o;
return Objects.equals(originDescription, that.originDescription);
}
@Override
public int hashCode() {
return Objects.hash(originDescription);
}
}

View File

@ -11,7 +11,6 @@ import java.util.stream.Stream;
public abstract class Oaf implements Serializable {
private static final long serialVersionUID = 94599232915572420L;
/**
* The list of datasource id/name pairs providing this relationship.
*/
@ -45,4 +44,65 @@ public abstract class Oaf implements Serializable {
this.lastupdatetimestamp = lastupdatetimestamp;
}
public void mergeFrom(Oaf o) {
if (Objects.isNull(o)) {
return;
}
setCollectedfrom(
Stream
.concat(
Optional
.ofNullable(getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()),
Optional
.ofNullable(o.getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()))
.distinct() // relies on KeyValue.equals
.collect(Collectors.toList()));
setLastupdatetimestamp(
Math
.max(
Optional.ofNullable(getLastupdatetimestamp()).orElse(0L),
Optional.ofNullable(o.getLastupdatetimestamp()).orElse(0L)));
}
public void mergeOAFDataInfo(Oaf o) {
Optional.ofNullable(o)
.ifPresent(other -> Optional.ofNullable(other.getDataInfo())
.ifPresent(otherDataInfo -> Optional.ofNullable(this.getDataInfo())
.ifPresent(thisDataInfo -> {
if (compareTrust(this, other) < 0 || thisDataInfo.getInvisible()) {
setDataInfo(otherDataInfo);
}
})));
}
protected String extractTrust(Oaf e) {
if (e == null || e.getDataInfo() == null || e.getDataInfo().getTrust() == null)
return "0.0";
return e.getDataInfo().getTrust();
}
protected int compareTrust(Oaf a, Oaf b) {
return extractTrust(a).compareTo(extractTrust(b));
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Oaf oaf = (Oaf) o;
return Objects.equals(getDataInfo(), oaf.getDataInfo())
&& Objects.equals(lastupdatetimestamp, oaf.lastupdatetimestamp);
}
@Override
public int hashCode() {
return Objects.hash(dataInfo, lastupdatetimestamp);
}
}

View File

@ -7,8 +7,6 @@ import java.util.stream.Collectors;
public abstract class OafEntity extends Oaf implements Serializable {
private static final long serialVersionUID = -7793594664115821897L;
private String id;
private List<String> originalId;
@ -125,19 +123,55 @@ public abstract class OafEntity extends Oaf implements Serializable {
this.oaiprovenance = oaiprovenance;
}
@Override
public int hashCode() {
return Objects.hash(getId());
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
originalId = mergeLists(originalId, e.getOriginalId());
pid = mergeLists(pid, e.getPid());
if (e.getDateofcollection() != null && compareTrust(this, e) < 0)
dateofcollection = e.getDateofcollection();
if (e.getDateoftransformation() != null && compareTrust(this, e) < 0)
dateoftransformation = e.getDateoftransformation();
extraInfo = mergeLists(extraInfo, e.getExtraInfo());
if (e.getOaiprovenance() != null && compareTrust(this, e) < 0)
oaiprovenance = e.getOaiprovenance();
measures = mergeLists(measures, e.getMeasures());
context = mergeLists(context, e.getContext());
}
@SafeVarargs
protected final <T> List<T> mergeLists(final List<T>... lists) {
return Arrays
.stream(lists)
.filter(Objects::nonNull)
.flatMap(List::stream)
.filter(Objects::nonNull)
.distinct()
.collect(Collectors.toList());
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (!(o instanceof OafEntity))
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
return false;
OafEntity oafEntity = (OafEntity) o;
return Objects.equals(getId(), oafEntity.getId());
return Objects.equals(id, oafEntity.id);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), id);
}
}

View File

@ -1,12 +1,11 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
/**
* The OpenAccess color meant to be used on the result level
*/
public enum OpenAccessColor implements Serializable {
public enum OpenAccessColor {
gold, hybrid, bronze
}

View File

@ -6,12 +6,6 @@ import java.util.List;
public class Organization extends OafEntity implements Serializable {
enum OrganizationType {
Archive, Company, Education, Facility, Government, Healthcare, Nonprofit, Other, Unknown
}
private static final long serialVersionUID = -9048723860770504113L;
private Field<String> legalshortname;
private Field<String> legalname;
@ -44,8 +38,6 @@ public class Organization extends OafEntity implements Serializable {
private Qualifier country;
private OrganizationType organizationType;
public Field<String> getLegalshortname() {
return legalshortname;
}
@ -175,11 +167,48 @@ public class Organization extends OafEntity implements Serializable {
this.country = country;
}
public OrganizationType getOrganizationType() {
return organizationType;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
public void setOrganizationType(OrganizationType organizationType) {
this.organizationType = organizationType;
if (!Organization.class.isAssignableFrom(e.getClass())) {
return;
}
final Organization o = (Organization) e;
legalshortname = o.getLegalshortname() != null && compareTrust(this, e) < 0
? o.getLegalshortname()
: legalshortname;
legalname = o.getLegalname() != null && compareTrust(this, e) < 0 ? o.getLegalname() : legalname;
alternativeNames = mergeLists(o.getAlternativeNames(), alternativeNames);
websiteurl = o.getWebsiteurl() != null && compareTrust(this, e) < 0 ? o.getWebsiteurl() : websiteurl;
logourl = o.getLogourl() != null && compareTrust(this, e) < 0 ? o.getLogourl() : logourl;
eclegalbody = o.getEclegalbody() != null && compareTrust(this, e) < 0 ? o.getEclegalbody() : eclegalbody;
eclegalperson = o.getEclegalperson() != null && compareTrust(this, e) < 0
? o.getEclegalperson()
: eclegalperson;
ecnonprofit = o.getEcnonprofit() != null && compareTrust(this, e) < 0 ? o.getEcnonprofit() : ecnonprofit;
ecresearchorganization = o.getEcresearchorganization() != null && compareTrust(this, e) < 0
? o.getEcresearchorganization()
: ecresearchorganization;
echighereducation = o.getEchighereducation() != null && compareTrust(this, e) < 0
? o.getEchighereducation()
: echighereducation;
ecinternationalorganizationeurinterests = o.getEcinternationalorganizationeurinterests() != null
&& compareTrust(this, e) < 0
? o.getEcinternationalorganizationeurinterests()
: ecinternationalorganizationeurinterests;
ecinternationalorganization = o.getEcinternationalorganization() != null && compareTrust(this, e) < 0
? o.getEcinternationalorganization()
: ecinternationalorganization;
ecenterprise = o.getEcenterprise() != null && compareTrust(this, e) < 0
? o.getEcenterprise()
: ecenterprise;
ecsmevalidated = o.getEcsmevalidated() != null && compareTrust(this, e) < 0
? o.getEcsmevalidated()
: ecsmevalidated;
ecnutscode = o.getEcnutscode() != null && compareTrust(this, e) < 0 ? o.getEcnutscode() : ecnutscode;
country = o.getCountry() != null && compareTrust(this, e) < 0 ? o.getCountry() : country;
mergeOAFDataInfo(o);
}
}

View File

@ -6,8 +6,6 @@ import java.util.Objects;
public class OriginDescription implements Serializable {
private static final long serialVersionUID = -7256156902727658863L;
private String harvestDate;
private Boolean altered = true;
@ -68,4 +66,23 @@ public class OriginDescription implements Serializable {
this.metadataNamespace = metadataNamespace;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OriginDescription that = (OriginDescription) o;
return Objects.equals(harvestDate, that.harvestDate)
&& Objects.equals(altered, that.altered)
&& Objects.equals(baseURL, that.baseURL)
&& Objects.equals(identifier, that.identifier)
&& Objects.equals(datestamp, that.datestamp)
&& Objects.equals(metadataNamespace, that.metadataNamespace);
}
@Override
public int hashCode() {
return Objects.hash(harvestDate, altered, baseURL, identifier, datestamp, metadataNamespace);
}
}

View File

@ -8,8 +8,6 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
public class OtherResearchProduct extends Result implements Serializable {
private static final long serialVersionUID = -7611546868867175491L;
private List<Field<String>> contactperson;
private List<Field<String>> contactgroup;
@ -44,4 +42,19 @@ public class OtherResearchProduct extends Result implements Serializable {
this.tool = tool;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!OtherResearchProduct.class.isAssignableFrom(e.getClass())) {
return;
}
OtherResearchProduct o = (OtherResearchProduct) e;
contactperson = mergeLists(contactperson, o.getContactperson());
contactgroup = mergeLists(contactgroup, o.getContactgroup());
tool = mergeLists(tool, o.getTool());
mergeOAFDataInfo(e);
}
}

View File

@ -8,8 +8,6 @@ import org.apache.commons.lang3.StringUtils;
public class Project extends OafEntity implements Serializable {
private static final long serialVersionUID = 5783959097903529424L;
private Field<String> websiteurl;
private Field<String> code;
@ -300,4 +298,64 @@ public class Project extends OafEntity implements Serializable {
this.fundedamount = fundedamount;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Project.class.isAssignableFrom(e.getClass())) {
return;
}
Project p = (Project) e;
websiteurl = p.getWebsiteurl() != null && compareTrust(this, e) < 0 ? p.getWebsiteurl() : websiteurl;
code = p.getCode() != null && compareTrust(this, e) < 0 ? p.getCode() : code;
acronym = p.getAcronym() != null && compareTrust(this, e) < 0 ? p.getAcronym() : acronym;
title = p.getTitle() != null && compareTrust(this, e) < 0 ? p.getTitle() : title;
startdate = p.getStartdate() != null && compareTrust(this, e) < 0 ? p.getStartdate() : startdate;
enddate = p.getEnddate() != null && compareTrust(this, e) < 0 ? p.getEnddate() : enddate;
callidentifier = p.getCallidentifier() != null && compareTrust(this, e) < 0
? p.getCallidentifier()
: callidentifier;
keywords = p.getKeywords() != null && compareTrust(this, e) < 0 ? p.getKeywords() : keywords;
duration = p.getDuration() != null && compareTrust(this, e) < 0 ? p.getDuration() : duration;
ecsc39 = p.getEcsc39() != null && compareTrust(this, e) < 0 ? p.getEcsc39() : ecsc39;
oamandatepublications = p.getOamandatepublications() != null && compareTrust(this, e) < 0
? p.getOamandatepublications()
: oamandatepublications;
ecarticle29_3 = p.getEcarticle29_3() != null && compareTrust(this, e) < 0
? p.getEcarticle29_3()
: ecarticle29_3;
subjects = mergeLists(subjects, p.getSubjects());
fundingtree = mergeLists(fundingtree, p.getFundingtree());
contracttype = p.getContracttype() != null && compareTrust(this, e) < 0
? p.getContracttype()
: contracttype;
optional1 = p.getOptional1() != null && compareTrust(this, e) < 0 ? p.getOptional1() : optional1;
optional2 = p.getOptional2() != null && compareTrust(this, e) < 0 ? p.getOptional2() : optional2;
jsonextrainfo = p.getJsonextrainfo() != null && compareTrust(this, e) < 0
? p.getJsonextrainfo()
: jsonextrainfo;
contactfullname = p.getContactfullname() != null && compareTrust(this, e) < 0
? p.getContactfullname()
: contactfullname;
contactfax = p.getContactfax() != null && compareTrust(this, e) < 0 ? p.getContactfax() : contactfax;
contactphone = p.getContactphone() != null && compareTrust(this, e) < 0
? p.getContactphone()
: contactphone;
contactemail = p.getContactemail() != null && compareTrust(this, e) < 0
? p.getContactemail()
: contactemail;
summary = p.getSummary() != null && compareTrust(this, e) < 0 ? p.getSummary() : summary;
currency = p.getCurrency() != null && compareTrust(this, e) < 0 ? p.getCurrency() : currency;
if (p.getH2020topiccode() != null && StringUtils.isEmpty(h2020topiccode)){
h2020topiccode = p.getH2020topiccode();
h2020topicdescription = p.getH2020topicdescription();
}
h2020classification = mergeLists(h2020classification, p.getH2020classification());
mergeOAFDataInfo(e);
}
}

View File

@ -7,8 +7,6 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Publication extends Result implements Serializable {
private static final long serialVersionUID = 4155353046627214846L;
// publication specific
private Journal journal;
@ -24,4 +22,18 @@ public class Publication extends Result implements Serializable {
this.journal = journal;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Publication.class.isAssignableFrom(e.getClass())) {
return;
}
Publication p = (Publication) e;
if (p.getJournal() != null && compareTrust(this, e) < 0)
journal = p.getJournal();
mergeOAFDataInfo(e);
}
}

View File

@ -2,15 +2,13 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.StringUtils;
import com.google.common.base.Joiner;
import com.fasterxml.jackson.annotation.JsonIgnore;
public class Qualifier implements Serializable {
private static final long serialVersionUID = 6632548656644563076L;
private String classid;
private String classname;
private String schemeid;
@ -48,4 +46,42 @@ public class Qualifier implements Serializable {
this.schemename = schemename;
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s::%s::%s",
classid != null ? classid : "",
classname != null ? classname : "",
schemeid != null ? schemeid : "",
schemename != null ? schemename : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(classid)
&& StringUtils.isBlank(classname)
&& StringUtils.isBlank(schemeid)
&& StringUtils.isBlank(schemename);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Qualifier other = (Qualifier) obj;
return toComparableString().equals(other.toComparableString());
}
}

View File

@ -18,8 +18,6 @@ import eu.dnetlib.dhp.schema.common.ModelSupport;
*/
public class Relation extends Oaf {
private static final long serialVersionUID = -7061565324218172207L;
/**
* Main relationship classifier, values include 'resultResult', 'resultProject', 'resultOrganization', etc.
*/
@ -126,9 +124,26 @@ public class Relation extends Oaf {
this.validationDate = validationDate;
}
@Override
public int hashCode() {
return Objects.hash(getRelType(), getSubRelType(), getRelClass(), getSource(), getTarget());
public void mergeFrom(final Relation r) {
checkArgument(Objects.equals(getSource(), r.getSource()), "source ids must be equal");
checkArgument(Objects.equals(getTarget(), r.getTarget()), "target ids must be equal");
checkArgument(Objects.equals(getRelType(), r.getRelType()), "relType(s) must be equal");
checkArgument(
Objects.equals(getSubRelType(), r.getSubRelType()), "subRelType(s) must be equal");
checkArgument(Objects.equals(getRelClass(), r.getRelClass()), "relClass(es) must be equal");
setValidated(getValidated() || r.getValidated());
try {
setValidationDate(ModelSupport.oldest(getValidationDate(), r.getValidationDate()));
} catch (ParseException e) {
throw new IllegalArgumentException(String
.format(
"invalid validation date format in relation [s:%s, t:%s]: %s", getSource(), getTarget(),
getValidationDate()));
}
super.mergeFrom(r);
}
@Override
@ -138,11 +153,16 @@ public class Relation extends Oaf {
if (o == null || getClass() != o.getClass())
return false;
Relation relation = (Relation) o;
return Objects.equals(getRelType(), relation.getRelType()) &&
Objects.equals(getSubRelType(), relation.getSubRelType()) &&
Objects.equals(getRelClass(), relation.getRelClass()) &&
Objects.equals(getSource(), relation.getSource()) &&
Objects.equals(getTarget(), relation.getTarget());
return relType.equals(relation.relType)
&& subRelType.equals(relation.subRelType)
&& relClass.equals(relation.relClass)
&& source.equals(relation.source)
&& target.equals(relation.target);
}
@Override
public int hashCode() {
return Objects.hash(relType, subRelType, relClass, source, target, collectedfrom);
}
}

View File

@ -1,18 +1,28 @@
package eu.dnetlib.dhp.schema.oaf;
import static java.util.Objects.*;
import java.io.Serializable;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.commons.lang3.ObjectUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.ImmutablePair;
import org.apache.commons.lang3.tuple.Pair;
import com.fasterxml.jackson.annotation.JsonProperty;
import eu.dnetlib.dhp.schema.common.AccessRightComparator;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
/**
* The type Result.
*/
public class Result extends OafEntity implements Serializable {
private static final long serialVersionUID = 5597290552671699408L;
/**
* ( article | book ) processing charges.
*/
@ -145,16 +155,6 @@ public class Result extends OafEntity implements Serializable {
private Boolean publiclyFunded;
private String transformativeAgreement;
public String getTransformativeAgreement() {
return transformativeAgreement;
}
public void setTransformativeAgreement(String transformativeAgreement) {
this.transformativeAgreement = transformativeAgreement;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
@ -579,4 +579,349 @@ public class Result extends OafEntity implements Serializable {
this.publiclyFunded = publiclyFunded;
}
/**
* Is an enrichment boolean.
*
* @param e the e
* @return the boolean
*/
public static boolean isAnEnrichment(OafEntity e) {
return e.getDataInfo()!= null &&
e.getDataInfo().getProvenanceaction()!= null
&& ModelConstants.PROVENANCE_ENRICH.equalsIgnoreCase(e.getDataInfo().getProvenanceaction().getClassid());
}
/**
* Normalize pid string.
*
* @param pid the pid
* @return the string
*/
private static String extractKeyFromPid(final StructuredProperty pid) {
if (pid == null)
return null;
final StructuredProperty normalizedPid = CleaningFunctions.normalizePidValue(pid);
return String.format("%s::%s", normalizedPid.getQualifier().getClassid(), normalizedPid.getValue());
}
/**
* Valid pid boolean.
*
* @param p the p
* @return the boolean
*/
private static boolean validPid(final StructuredProperty p) {
return p.getValue()!= null && p.getQualifier()!= null && p.getQualifier().getClassid()!=null;
}
/**
* This method converts the list of instance enrichments
* into a Map where the key is the normalized identifier
* and the value is the instance itself
*
* @param ri the list of enrichment instances
* @return the result map
*/
public static Map<String, Instance> toInstanceMap(final List<Instance> ri) {
return ri
.stream()
.filter(i -> i.getPid() != null || i.getAlternateIdentifier() != null)
.flatMap(i -> {
final List<Pair<String, Instance>> result = new ArrayList<>();
if (i.getPid() != null)
i.getPid().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
if (i.getAlternateIdentifier() != null)
i.getAlternateIdentifier().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
return result.stream();
}).collect(Collectors.toMap(
Pair::getLeft,
Pair::getRight,
(a, b) -> a
));
}
/**
* This utility method finds the list of enrichment instances
* that match one or more PIDs in the input list
*
* @param pids the list of PIDs
* @param enrichments the List of enrichment instances having the same pid
* @return the list
*/
private static List<Instance> findEnrichmentsByPID(final List<StructuredProperty> pids, final Map<String,Instance> enrichments) {
if (pids == null || enrichments == null)
return null;
return pids
.stream()
.map(Result::extractKeyFromPid)
.map(enrichments::get)
.filter(Objects::nonNull)
.collect(Collectors.toList());
}
/**
* This method apply enrichment on a single instance
* The enrichment consists of replacing values on
* single attribute only if in the current instance is missing
* The only repeatable field enriched is measures
*
* @param currentInstance the current instance
* @param enrichment the enrichment instance
*/
private static void applyEnrichment(final Instance currentInstance, final Instance enrichment) {
if (currentInstance == null || enrichment == null)
return;
//ENRICH accessright
if (enrichment.getAccessright()!=null && currentInstance.getAccessright() == null)
currentInstance.setAccessright(enrichment.getAccessright());
//ENRICH license
if (enrichment.getLicense()!=null && currentInstance.getLicense() == null)
currentInstance.setLicense(enrichment.getLicense());
//ENRICH instanceType
if (enrichment.getInstancetype()!=null && currentInstance.getInstancetype() == null)
currentInstance.setInstancetype(enrichment.getInstancetype());
//ENRICH hostedby
if (enrichment.getHostedby()!=null && currentInstance.getHostedby() == null)
currentInstance.setHostedby(enrichment.getHostedby());
//ENRICH distributionlocation
if (enrichment.getDistributionlocation()!=null && currentInstance.getDistributionlocation() == null)
currentInstance.setDistributionlocation(enrichment.getDistributionlocation());
//ENRICH collectedfrom
if (enrichment.getCollectedfrom()!=null && currentInstance.getCollectedfrom() == null)
currentInstance.setCollectedfrom(enrichment.getCollectedfrom());
//ENRICH dateofacceptance
if (enrichment.getDateofacceptance()!=null && currentInstance.getDateofacceptance() == null)
currentInstance.setDateofacceptance(enrichment.getDateofacceptance());
//ENRICH processingchargeamount
if (enrichment.getProcessingchargeamount()!=null && currentInstance.getProcessingchargeamount() == null)
currentInstance.setProcessingchargeamount(enrichment.getProcessingchargeamount());
//ENRICH refereed
if (enrichment.getRefereed()!=null && currentInstance.getRefereed() == null)
currentInstance.setRefereed(enrichment.getRefereed());
//ENRICH measures
if (enrichment.getMeasures()!=null)
if (currentInstance.getMeasures() == null) {
currentInstance.setMeasures(enrichment.getMeasures());
} else {
enrichment.getMeasures().forEach(currentInstance.getMeasures()::add);
}
}
/**
* This main method apply the enrichment of the instances
*
* @param toEnrichInstances the instances that could be enriched
* @param enrichmentInstances the enrichment instances
* @return list of instances possibly enriched
*/
private static List<Instance> enrichInstances(final List<Instance> toEnrichInstances,final List<Instance> enrichmentInstances) {
final List<Instance> enrichmentResult = new ArrayList<>();
if (toEnrichInstances == null) {
return enrichmentResult;
}
if (enrichmentInstances == null) {
return toEnrichInstances;
}
Map<String, Instance> ri = toInstanceMap(enrichmentInstances);
toEnrichInstances.forEach(i -> {
final List<Instance> e = findEnrichmentsByPID(i.getPid(), ri);
if (e!= null && !e.isEmpty()) {
e.forEach(enr -> applyEnrichment(i, enr));
} else {
final List<Instance> a = findEnrichmentsByPID(i.getAlternateIdentifier(), ri);
if (a!= null && !a.isEmpty()) {
a.forEach(enr -> applyEnrichment(i, enr));
}
}
enrichmentResult.add(i);
});
return enrichmentResult;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Result.class.isAssignableFrom(e.getClass())) {
return;
}
Result r = (Result) e;
if(processingchargeamount == null || StringUtils.isBlank(processingchargeamount.getValue())){
processingchargeamount = r.getProcessingchargeamount();
processingchargecurrency = r.getProcessingchargecurrency();
}
eoscifguidelines = mergeLists(eoscifguidelines, r.getEoscifguidelines());
setIsGreen(mergeBooleanOR(getIsGreen(), r.getIsGreen()));
setIsInDiamondJournal(mergeBooleanOR(getIsInDiamondJournal(), r.getIsInDiamondJournal()));
setPubliclyFunded(mergeBooleanOR(getPubliclyFunded(), r.getPubliclyFunded()));
if (Boolean.logicalXor(nonNull(getOpenAccessColor()), nonNull(r.getOpenAccessColor()))) {
setOpenAccessColor(ObjectUtils.firstNonNull(getOpenAccessColor(), r.getOpenAccessColor()));
} else if (!Objects.equals(getOpenAccessColor(), r.getOpenAccessColor())) {
setOpenAccessColor(null);
}
if( !isAnEnrichment(this) && !isAnEnrichment(e))
instance = mergeLists(instance, r.getInstance());
else {
final List<Instance> enrichmentInstances = isAnEnrichment(this) ? instance : r.getInstance();
final List<Instance> enrichedInstances= isAnEnrichment(this) ? r.getInstance(): instance;
if (isAnEnrichment(this))
setDataInfo(e.getDataInfo());
instance = enrichInstances(enrichedInstances,enrichmentInstances);
}
if (r.getBestaccessright() != null
&& new AccessRightComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)
resulttype = r.getResulttype();
if (r.getLanguage() != null && compareTrust(this, r) < 0)
language = r.getLanguage();
if (nonNull(r.getDateofacceptance())) {
if (isNull(getDateofacceptance())) {
dateofacceptance = r.getDateofacceptance();
} else if (compareTrust(this, r) < 0) {
dateofacceptance = r.getDateofacceptance();
}
}
country = mergeLists(country, r.getCountry());
subject = mergeLists(subject, r.getSubject());
// merge title lists: main title with higher trust and distinct between the others
StructuredProperty baseMainTitle = null;
if (title != null) {
baseMainTitle = getMainTitle(title);
if (baseMainTitle != null) {
final StructuredProperty p = baseMainTitle;
title = title.stream().filter(t -> t != p).collect(Collectors.toList());
}
}
StructuredProperty newMainTitle = null;
if (r.getTitle() != null) {
newMainTitle = getMainTitle(r.getTitle());
if (newMainTitle != null) {
final StructuredProperty p = newMainTitle;
r.setTitle(r.getTitle().stream().filter(t -> t != p).collect(Collectors.toList()));
}
}
if (newMainTitle != null && compareTrust(this, r) < 0) {
baseMainTitle = newMainTitle;
}
title = mergeLists(title, r.getTitle());
if (title != null && baseMainTitle != null) {
title.add(baseMainTitle);
}
relevantdate = mergeLists(relevantdate, r.getRelevantdate());
description = longestLists(description, r.getDescription());
if (r.getPublisher() != null && compareTrust(this, r) < 0)
publisher = r.getPublisher();
if (r.getEmbargoenddate() != null && compareTrust(this, r) < 0)
embargoenddate = r.getEmbargoenddate();
source = mergeLists(source, r.getSource());
fulltext = mergeLists(fulltext, r.getFulltext());
format = mergeLists(format, r.getFormat());
contributor = mergeLists(contributor, r.getContributor());
if (r.getResourcetype() != null)
resourcetype = r.getResourcetype();
coverage = mergeLists(coverage, r.getCoverage());
externalReference = mergeLists(externalReference, r.getExternalReference());
}
private Boolean mergeBooleanOR(Boolean a, Boolean b) {
if (Boolean.logicalXor(isNull(a), isNull(b))) {
return ObjectUtils.firstNonNull(a, b);
} else if (nonNull(a) & nonNull(b)) {
return a || b;
} else {
return null;
}
}
/**
* Longest lists list.
*
* @param a the a
* @param b the b
* @return the list
*/
private List<Field<String>> longestLists(List<Field<String>> a, List<Field<String>> b) {
if (a == null || b == null)
return a == null ? b : a;
if (a.size() == b.size()) {
int msa = a
.stream()
.filter(i -> i != null && i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
int msb = b
.stream()
.filter(i -> i != null && i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
return msa > msb ? a : b;
}
return a.size() > b.size() ? a : b;
}
/**
* Gets main title.
*
* @param titles the titles
* @return the main title
*/
private StructuredProperty getMainTitle(List<StructuredProperty> titles) {
// need to check if the list of titles contains more than 1 main title? (in that case, we should chose which
// main title select in the list)
for (StructuredProperty t : titles) {
if (t.getQualifier() != null && t.getQualifier().getClassid() != null)
if (t.getQualifier().getClassid().equals("main title"))
return t;
}
return null;
}
}

View File

@ -8,8 +8,6 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
public class Software extends Result implements Serializable {
private static final long serialVersionUID = -3096641763359312576L;
private List<Field<String>> documentationUrl;
// candidate for removal
@ -56,4 +54,27 @@ public class Software extends Result implements Serializable {
this.programmingLanguage = programmingLanguage;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Software.class.isAssignableFrom(e.getClass())) {
return;
}
final Software s = (Software) e;
documentationUrl = mergeLists(documentationUrl, s.getDocumentationUrl());
license = mergeLists(license, s.getLicense());
codeRepositoryUrl = s.getCodeRepositoryUrl() != null && compareTrust(this, s) < 0
? s.getCodeRepositoryUrl()
: codeRepositoryUrl;
programmingLanguage = s.getProgrammingLanguage() != null && compareTrust(this, s) < 0
? s.getProgrammingLanguage()
: programmingLanguage;
mergeOAFDataInfo(e);
}
}

View File

@ -2,7 +2,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -11,8 +10,6 @@ import org.apache.commons.lang3.StringUtils;
public class StructuredProperty implements Serializable {
private static final long serialVersionUID = -8490243153237377762L;
private String value;
private Qualifier qualifier;
@ -43,4 +40,31 @@ public class StructuredProperty implements Serializable {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return Stream
.of(
getQualifier().toComparableString(),
Optional.ofNullable(getValue()).map(String::toLowerCase).orElse(""))
.filter(StringUtils::isNotBlank)
.collect(Collectors.joining("||"));
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
StructuredProperty other = (StructuredProperty) obj;
return toComparableString().equals(other.toComparableString());
}
}

View File

@ -3,7 +3,4 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
public class Subject extends StructuredProperty implements Serializable {
private static final long serialVersionUID = 5072481219939207428L;
}

View File

@ -0,0 +1,74 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.HashSet;
import java.util.Objects;
import java.util.Optional;
import java.util.Set;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class CleaningFunctions {
public static final String DOI_PREFIX_REGEX = "(^10\\.|\\/10\\.)";
public static final String DOI_PREFIX = "10.";
public static final Set<String> PID_BLACKLIST = new HashSet<>();
static {
PID_BLACKLIST.add("none");
PID_BLACKLIST.add("na");
}
public CleaningFunctions() {}
/**
* Utility method that filter PID values on a per-type basis.
* @param s the PID whose value will be checked.
* @return false if the pid matches the filter criteria, true otherwise.
*/
public static boolean pidFilter(StructuredProperty s) {
final String pidValue = s.getValue();
if (Objects.isNull(s.getQualifier()) ||
StringUtils.isBlank(pidValue) ||
StringUtils.isBlank(pidValue.replaceAll("(?:\\n|\\r|\\t|\\s)", ""))) {
return false;
}
if (CleaningFunctions.PID_BLACKLIST.contains(pidValue)) {
return false;
}
return !PidBlacklistProvider.getBlacklist(s.getQualifier().getClassid()).contains(pidValue);
}
/**
* Utility method that normalises PID values on a per-type basis.
* @param pid the PID whose value will be normalised.
* @return the PID containing the normalised value.
*/
public static StructuredProperty normalizePidValue(StructuredProperty pid) {
pid.setValue(
normalizePidValue(
pid.getQualifier().getClassid(),
pid.getValue()));
return pid;
}
public static String normalizePidValue(String pidType, String pidValue) {
String value = Optional
.ofNullable(pidValue)
.map(String::trim)
.orElseThrow(() -> new IllegalArgumentException("PID value cannot be empty"));
switch (pidType) {
// TODO add cleaning for more PID types as needed
case "doi":
return value.toLowerCase().replaceFirst(DOI_PREFIX_REGEX, DOI_PREFIX);
}
return value;
}
}

View File

@ -0,0 +1,292 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import static com.google.common.base.Preconditions.checkArgument;
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
import java.io.Serializable;
import java.nio.charset.StandardCharsets;
import java.security.MessageDigest;
import java.util.*;
import java.util.function.Function;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.codec.binary.Hex;
import org.apache.commons.lang3.StringUtils;
import com.google.common.collect.HashBiMap;
import com.google.common.collect.Maps;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.*;
/**
* Factory class for OpenAIRE identifiers in the Graph
*/
public class IdentifierFactory implements Serializable {
public static final String ID_SEPARATOR = "::";
public static final String ID_PREFIX_SEPARATOR = "|";
public static final int ID_PREFIX_LEN = 12;
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, NAME] considered authoritative for that PID_TYPE.
* The id of the record (source_::id) will be rewritten as pidType_::id)
*/
public static final Map<PidType, HashBiMap<String, String>> PID_AUTHORITY = Maps.newHashMap();
static {
PID_AUTHORITY.put(PidType.doi, HashBiMap.create());
PID_AUTHORITY.get(PidType.doi).put(CROSSREF_ID, "Crossref");
PID_AUTHORITY.get(PidType.doi).put(DATACITE_ID, "Datacite");
PID_AUTHORITY.get(PidType.doi).put(ZENODO_OD_ID, "ZENODO");
PID_AUTHORITY.get(PidType.doi).put(ZENODO_R3_ID, "Zenodo");
PID_AUTHORITY.put(PidType.pmc, HashBiMap.create());
PID_AUTHORITY.get(PidType.pmc).put(EUROPE_PUBMED_CENTRAL_ID, "Europe PubMed Central");
PID_AUTHORITY.get(PidType.pmc).put(PUBMED_CENTRAL_ID, "PubMed Central");
PID_AUTHORITY.put(PidType.pmid, HashBiMap.create());
PID_AUTHORITY.get(PidType.pmid).put(EUROPE_PUBMED_CENTRAL_ID, "Europe PubMed Central");
PID_AUTHORITY.get(PidType.pmid).put(PUBMED_CENTRAL_ID, "PubMed Central");
PID_AUTHORITY.put(PidType.arXiv, HashBiMap.create());
PID_AUTHORITY.get(PidType.arXiv).put(ARXIV_ID, "arXiv.org e-Print Archive");
PID_AUTHORITY.put(PidType.w3id, HashBiMap.create());
PID_AUTHORITY.get(PidType.w3id).put(ROHUB_ID, "ROHub");
}
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, PID SUBSTRING] considered as delegated authority for that
* PID_TYPE. Example, Zenodo is delegated to forge DOIs that contain the 'zenodo' word.
*
* If a record with the same id (same pid) comes from 2 data sources, the one coming from a delegated source wins. E.g. Zenodo records win over those from Datacite.
* See also https://code-repo.d4science.org/D-Net/dnet-hadoop/pulls/187 and the class dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java
*/
public static final Map<PidType, Map<String, String>> DELEGATED_PID_AUTHORITY = Maps.newHashMap();
static {
DELEGATED_PID_AUTHORITY.put(PidType.doi, new HashMap<>());
DELEGATED_PID_AUTHORITY.get(PidType.doi).put(ZENODO_OD_ID, "zenodo");
DELEGATED_PID_AUTHORITY.get(PidType.doi).put(ZENODO_R3_ID, "zenodo");
DELEGATED_PID_AUTHORITY.put(PidType.w3id, new HashMap<>());
DELEGATED_PID_AUTHORITY.get(PidType.w3id).put(ROHUB_ID, "ro-id");
}
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, NAME] whose records are considered enrichment for the graph.
* Their OpenAIRE ID is built from the declared PID type. Are merged with their corresponding record, identified by
* the same OpenAIRE id.
*/
public static final Map<PidType, HashBiMap<String, String>> ENRICHMENT_PROVIDER = Maps.newHashMap();
static {
ENRICHMENT_PROVIDER.put(PidType.doi, HashBiMap.create());
ENRICHMENT_PROVIDER.get(PidType.doi).put(OPEN_APC_ID, OPEN_APC_NAME);
}
public static Set<String> delegatedAuthorityDatasourceIds() {
return DELEGATED_PID_AUTHORITY.values()
.stream()
.flatMap(m -> m.keySet().stream())
.collect(Collectors.toCollection(HashSet::new));
}
public static List<StructuredProperty> getPids(List<StructuredProperty> pid, KeyValue collectedFrom) {
return pidFromInstance(pid, collectedFrom, true).distinct().collect(Collectors.toList());
}
public static <T extends Result> String createDOIBoostIdentifier(T entity) {
if (entity == null)
return null;
StructuredProperty pid = null;
if (entity.getPid() != null) {
pid = entity
.getPid()
.stream()
.filter(Objects::nonNull)
.filter(s -> s.getQualifier() != null && "doi".equalsIgnoreCase(s.getQualifier().getClassid()))
.filter(CleaningFunctions::pidFilter)
.findAny()
.orElse(null);
} else {
if (entity.getInstance() != null) {
pid = entity
.getInstance()
.stream()
.filter(i -> i.getPid() != null)
.flatMap(i -> i.getPid().stream())
.filter(CleaningFunctions::pidFilter)
.findAny()
.orElse(null);
}
}
if (pid != null)
return idFromPid(entity, pid, true);
return null;
}
/**
* Creates an identifier from the most relevant PID (if available) provided by a known PID authority in the given
* entity T. Returns entity.id when none of the PIDs meet the selection criteria is available.
*
* @param entity the entity providing PIDs and a default ID.
* @param <T> the specific entity type. Currently Organization and Result subclasses are supported.
* @param md5 indicates whether should hash the PID value or not.
* @return an identifier from the most relevant PID, entity.id otherwise
*/
public static <T extends OafEntity> String createIdentifier(T entity, boolean md5) {
checkArgument(StringUtils.isNoneBlank(entity.getId()), "missing entity identifier");
final Map<String, Set<StructuredProperty>> pids = extractPids(entity);
return pids
.values()
.stream()
.flatMap(Set::stream)
.min(new PidComparator<>(entity))
.map(
min -> Optional
.ofNullable(pids.get(min.getQualifier().getClassid()))
.map(
p -> p
.stream()
.sorted(new PidValueComparator())
.findFirst()
.map(s -> idFromPid(entity, s, md5))
.orElseGet(entity::getId))
.orElseGet(entity::getId))
.orElseGet(entity::getId);
}
private static <T extends OafEntity> Map<String, Set<StructuredProperty>> extractPids(T entity) {
if (entity instanceof Result) {
return Optional
.ofNullable(((Result) entity).getInstance())
.map(IdentifierFactory::mapPids)
.orElse(new HashMap<>());
} else {
return entity
.getPid()
.stream()
.map(CleaningFunctions::normalizePidValue)
.filter(CleaningFunctions::pidFilter)
.collect(
Collectors
.groupingBy(
p -> p.getQualifier().getClassid(),
Collectors.mapping(p -> p, Collectors.toCollection(HashSet::new))));
}
}
private static Map<String, Set<StructuredProperty>> mapPids(List<Instance> instance) {
return instance
.stream()
.map(i -> pidFromInstance(i.getPid(), i.getCollectedfrom(), false))
.flatMap(Function.identity())
.collect(
Collectors
.groupingBy(
p -> p.getQualifier().getClassid(),
Collectors.mapping(p -> p, Collectors.toCollection(HashSet::new))));
}
private static Stream<StructuredProperty> pidFromInstance(List<StructuredProperty> pid, KeyValue collectedFrom,
boolean mapHandles) {
return Optional
.ofNullable(pid)
.map(
pp -> pp
.stream()
// filter away PIDs provided by a DS that is not considered an authority for the
// given PID Type
.filter(p -> shouldFilterPidByCriteria(collectedFrom, p, mapHandles))
.map(CleaningFunctions::normalizePidValue)
.filter(p -> isNotFromDelegatedAuthority(collectedFrom, p))
.filter(CleaningFunctions::pidFilter))
.orElse(Stream.empty());
}
private static boolean shouldFilterPidByCriteria(KeyValue collectedFrom, StructuredProperty p, boolean mapHandles) {
final PidType pType = PidType.tryValueOf(p.getQualifier().getClassid());
if (Objects.isNull(collectedFrom)) {
return false;
}
boolean isEnrich = Optional
.ofNullable(ENRICHMENT_PROVIDER.get(pType))
.map(enrich -> enrich.containsKey(collectedFrom.getKey())
|| enrich.containsValue(collectedFrom.getValue()))
.orElse(false);
boolean isAuthority = Optional
.ofNullable(PID_AUTHORITY.get(pType))
.map(authorities -> authorities.containsKey(collectedFrom.getKey())
|| authorities.containsValue(collectedFrom.getValue()))
.orElse(false);
return (mapHandles && pType.equals(PidType.handle)) || isEnrich || isAuthority;
}
private static boolean isNotFromDelegatedAuthority(KeyValue collectedFrom, StructuredProperty p) {
final PidType pType = PidType.tryValueOf(p.getQualifier().getClassid());
final Map<String, String> da = DELEGATED_PID_AUTHORITY.get(pType);
if (Objects.isNull(da)) {
return true;
}
if (!da.containsKey(collectedFrom.getKey())) {
return true;
}
return StringUtils.contains(p.getValue(), da.get(collectedFrom.getKey()));
}
/**
* @see {@link IdentifierFactory#createIdentifier(OafEntity, boolean)}
*/
public static <T extends OafEntity> String createIdentifier(T entity) {
return createIdentifier(entity, true);
}
private static <T extends OafEntity> String idFromPid(T entity, StructuredProperty s, boolean md5) {
return idFromPid(ModelSupport.getIdPrefix(entity.getClass()), s.getQualifier().getClassid(), s.getValue(), md5);
}
public static String idFromPid(String numericPrefix, String pidType, String pidValue, boolean md5) {
return new StringBuilder()
.append(numericPrefix)
.append(ID_PREFIX_SEPARATOR)
.append(createPrefix(pidType))
.append(ID_SEPARATOR)
.append(md5 ? md5(pidValue) : pidValue)
.toString();
}
// create the prefix (length = 12)
private static String createPrefix(String pidType) {
StringBuilder prefix = new StringBuilder(StringUtils.left(pidType, ID_PREFIX_LEN));
while (prefix.length() < ID_PREFIX_LEN) {
prefix.append("_");
}
return prefix.substring(0, ID_PREFIX_LEN);
}
public static String md5(final String s) {
try {
final MessageDigest md = MessageDigest.getInstance("MD5");
md.update(s.getBytes(StandardCharsets.UTF_8));
return new String(Hex.encodeHex(md.digest()));
} catch (final Exception e) {
return null;
}
}
}

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@ -0,0 +1,24 @@
package eu.dnetlib.dhp.schema.oaf.utils;
public class ModelHardLimits {
private ModelHardLimits() {}
public static final String LAYOUT = "index";
public static final String INTERPRETATION = "openaire";
public static final String SEPARATOR = "-";
public static final int MAX_EXTERNAL_ENTITIES = 50;
public static final int MAX_AUTHORS = 200;
public static final int MAX_AUTHOR_FULLNAME_LENGTH = 1000;
public static final int MAX_TITLE_LENGTH = 5000;
public static final int MAX_TITLES = 10;
public static final int MAX_ABSTRACT_LENGTH = 150000;
public static final int MAX_INSTANCES = 10;
public static String getCollectionName(String format) {
return format + SEPARATOR + LAYOUT + SEPARATOR + INTERPRETATION;
}
}

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@ -0,0 +1,38 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class OrganizationPidComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
PidType lClass = PidType.tryValueOf(left.getQualifier().getClassid());
PidType rClass = PidType.tryValueOf(right.getQualifier().getClassid());
if (lClass.equals(PidType.openorgs))
return -1;
if (rClass.equals(PidType.openorgs))
return 1;
if (lClass.equals(PidType.GRID))
return -1;
if (rClass.equals(PidType.GRID))
return 1;
if (lClass.equals(PidType.mag_id))
return -1;
if (rClass.equals(PidType.mag_id))
return 1;
if (lClass.equals(PidType.urn))
return -1;
if (rClass.equals(PidType.urn))
return 1;
return 0;
}
}

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@ -0,0 +1,8 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.HashMap;
import java.util.HashSet;
public class PidBlacklist extends HashMap<String, HashSet<String>> {
}

View File

@ -0,0 +1,39 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.io.IOException;
import java.util.HashSet;
import java.util.Optional;
import java.util.Set;
import org.apache.commons.io.IOUtils;
import com.fasterxml.jackson.databind.ObjectMapper;
public class PidBlacklistProvider {
private static final PidBlacklist blacklist;
static {
try {
String json = IOUtils.toString(IdentifierFactory.class.getResourceAsStream("pid_blacklist.json"));
blacklist = new ObjectMapper().readValue(json, PidBlacklist.class);
} catch (IOException e) {
throw new RuntimeException(e);
}
}
public static PidBlacklist getBlacklist() {
return blacklist;
}
public static Set<String> getBlacklist(String pidType) {
return Optional
.ofNullable(getBlacklist().get(pidType))
.orElse(new HashSet<>());
}
private PidBlacklistProvider() {}
}

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@ -0,0 +1,48 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Organization;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class PidComparator<T extends OafEntity> implements Comparator<StructuredProperty> {
private final T entity;
public PidComparator(T entity) {
this.entity = entity;
}
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
if (ModelSupport.isSubClass(entity, Result.class)) {
return compareResultPids(left, right);
}
if (ModelSupport.isSubClass(entity, Organization.class)) {
return compareOrganizationtPids(left, right);
}
// Else (but unlikely), lexicographical ordering will do.
return left.getQualifier().getClassid().compareTo(right.getQualifier().getClassid());
}
private int compareResultPids(StructuredProperty left, StructuredProperty right) {
return new ResultPidComparator().compare(left, right);
}
private int compareOrganizationtPids(StructuredProperty left, StructuredProperty right) {
return new OrganizationPidComparator().compare(left, right);
}
}

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@ -0,0 +1,79 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import org.apache.commons.lang3.EnumUtils;
public enum PidType {
/**
* The DOI syntax shall be made up of a DOI prefix and a DOI suffix separated by a forward slash.
*
* There is no defined limit on the length of the DOI name, or of the DOI prefix or DOI suffix.
*
* The DOI name is case-insensitive and can incorporate any printable characters from the legal graphic characters
* of Unicode. Further constraints on character use (e.g. use of language-specific alphanumeric characters) can be
* defined for an application by the ISO 26324 Registration Authority.
*
*
* DOI prefix: The DOI prefix shall be composed of a directory indicator followed by a registrant code.
* These two components shall be separated by a full stop (period). The directory indicator shall be "10" and
* distinguishes the entire set of character strings (prefix and suffix) as digital object identifiers within the
* resolution system.
*
* Registrant code: The second element of the DOI prefix shall be the registrant code. The registrant code is a
* unique string assigned to a registrant.
*
* DOI suffix: The DOI suffix shall consist of a character string of any length chosen by the registrant.
* Each suffix shall be unique to the prefix element that precedes it. The unique suffix can be a sequential number,
* or it might incorporate an identifier generated from or based on another system used by the registrant
* (e.g. ISAN, ISBN, ISRC, ISSN, ISTC, ISNI; in such cases, a preferred construction for such a suffix can be
* specified, as in Example 1).
*
* Source: https://www.doi.org/doi_handbook/2_Numbering.html#2.2
*/
doi,
/**
* PubMed Unique Identifier (PMID)
*
* This field is a 1-to-8 digit accession number with no leading zeros. It is present on all records and is the
* accession number for managing and disseminating records. PMIDs are not reused after records are deleted.
*
* Beginning in February 2012 PMIDs include extensions following a decimal point to account for article versions
* (e.g., 21804956.2). All citations are considered version 1 until replaced. The extended PMID is not displayed
* on the MEDLINE format.
*
* View the citation in abstract format in PubMed to access additional versions when available (see the article in
* the Jan-Feb 2012 NLM Technical Bulletin).
*
* Source: https://www.nlm.nih.gov/bsd/mms/medlineelements.html#pmid
*/
pmid,
/**
* This field contains the unique identifier for the cited article in PubMed Central. The identifier begins with the
* prefix PMC.
*
* Source: https://www.nlm.nih.gov/bsd/mms/medlineelements.html#pmc
*/
pmc, handle, arXiv, nct, pdb, w3id,
// Organization
openorgs, ROR, GRID, PIC, ISNI, Wikidata, FundRef, corda, corda_h2020, mag_id, urn,
// Used by dedup
undefined, original;
public static boolean isValid(String type) {
return EnumUtils.isValidEnum(PidType.class, type);
}
public static PidType tryValueOf(String s) {
try {
return PidType.valueOf(s);
} catch (Exception e) {
return PidType.original;
}
}
}

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@ -0,0 +1,33 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import java.util.Optional;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class PidValueComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
StructuredProperty l = CleaningFunctions.normalizePidValue(left);
StructuredProperty r = CleaningFunctions.normalizePidValue(right);
return Optional
.ofNullable(l.getValue())
.map(
lv -> Optional
.ofNullable(r.getValue())
.map(rv -> lv.compareTo(rv))
.orElse(-1))
.orElse(1);
}
}

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@ -0,0 +1,53 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class ResultPidComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
PidType lClass = PidType.tryValueOf(left.getQualifier().getClassid());
PidType rClass = PidType.tryValueOf(right.getQualifier().getClassid());
if (lClass.equals(PidType.doi))
return -1;
if (rClass.equals(PidType.doi))
return 1;
if (lClass.equals(PidType.pmid))
return -1;
if (rClass.equals(PidType.pmid))
return 1;
if (lClass.equals(PidType.pmc))
return -1;
if (rClass.equals(PidType.pmc))
return 1;
if (lClass.equals(PidType.handle))
return -1;
if (rClass.equals(PidType.handle))
return 1;
if (lClass.equals(PidType.arXiv))
return -1;
if (rClass.equals(PidType.arXiv))
return 1;
if (lClass.equals(PidType.nct))
return -1;
if (rClass.equals(PidType.nct))
return 1;
if (lClass.equals(PidType.pdb))
return -1;
if (rClass.equals(PidType.pdb))
return 1;
return 0;
}
}

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@ -0,0 +1,77 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import static eu.dnetlib.dhp.schema.common.ModelConstants.CROSSREF_ID;
import java.util.Comparator;
import java.util.HashSet;
import java.util.Optional;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Result;
public class ResultTypeComparator implements Comparator<Result> {
@Override
public int compare(Result left, Result right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
HashSet<String> lCf = getCollectedFromIds(left);
HashSet<String> rCf = getCollectedFromIds(right);
if (lCf.contains(CROSSREF_ID) && !rCf.contains(CROSSREF_ID)) {
return -1;
}
if (!lCf.contains(CROSSREF_ID) && rCf.contains(CROSSREF_ID)) {
return 1;
}
String lClass = left.getResulttype().getClassid();
String rClass = right.getResulttype().getClassid();
if (lClass.equals(rClass))
return 0;
if (lClass.equals(ModelConstants.PUBLICATION_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.PUBLICATION_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.DATASET_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.DATASET_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.SOFTWARE_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.SOFTWARE_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.ORP_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.ORP_RESULTTYPE_CLASSID))
return 1;
// Else (but unlikely), lexicographical ordering will do.
return lClass.compareTo(rClass);
}
protected HashSet<String> getCollectedFromIds(Result left) {
return Optional
.ofNullable(left.getCollectedfrom())
.map(
cf -> cf
.stream()
.map(KeyValue::getKey)
.collect(Collectors.toCollection(HashSet::new)))
.orElse(new HashSet<>());
}
}

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@ -1,39 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* Used to refer to the Article Processing Charge information. It contains two parameters: -
* currency of type String to store the currency of the APC - amount of type String to stores the charged amount
*/
public class APC implements Serializable {
private static final long serialVersionUID = 8324447899738993669L;
private String currency;
private String amount;
public static APC newInstance(String currency, String amount) {
APC apc = new APC();
apc.setCurrency(currency);
apc.setAmount(amount);
return apc;
}
public String getCurrency() {
return currency;
}
public void setCurrency(String currency) {
this.currency = currency;
}
public String getAmount() {
return amount;
}
public void setAmount(String amount) {
this.amount = amount;
}
}

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@ -1,41 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* This class models the access rights of research products.
*/
public class AccessRight implements Serializable {
private static final long serialVersionUID = 7995566912611238604L;
private String value;
private OpenAccessRoute openAccessRoute;
public static AccessRight newInstance(String value, OpenAccessRoute openAccessRoute) {
AccessRight accessRight = new AccessRight();
accessRight.setValue(value);
accessRight.setOpenAccessRoute(openAccessRoute);
return accessRight;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public OpenAccessRoute getOpenAccessRoute() {
return openAccessRoute;
}
public void setOpenAccessRoute(OpenAccessRoute openAccessRoute) {
this.openAccessRoute = openAccessRoute;
}
}

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@ -1,72 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Author implements Serializable {
private static final long serialVersionUID = 5482727671039062564L;
private String fullname;
private String name;
private String surname;
private Integer rank;
/**
* The author's persistent identifiers
*/
private List<Pid> pid;
public static Author newInstance(String fullname, String name, String surname, int rank, List<Pid> pid) {
Author a = new Author();
a.setFullname(fullname);
a.setName(name);
a.setSurname(surname);
a.setRank(rank);
a.setPid(pid);
return a;
}
public String getFullname() {
return fullname;
}
public void setFullname(String fullname) {
this.fullname = fullname;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getSurname() {
return surname;
}
public void setSurname(String surname) {
this.surname = surname;
}
public Integer getRank() {
return rank;
}
public void setRank(Integer rank) {
this.rank = rank;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
}

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@ -1,44 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* BestAccessRight. Used to represent the result best access rights.
*/
public class BestAccessRight implements Serializable {
private static final long serialVersionUID = 689431927147731065L;
/**
* AccessRight code
*/
private String code; // the classid in the Qualifier
/**
* Label for the access mode
*/
private String label; // the classname in the Qualifier
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public static BestAccessRight newInstance(String code, String label) {
BestAccessRight ar = new BestAccessRight();
ar.code = code;
ar.label = label;
return ar;
}
}

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@ -1,44 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
import com.google.common.collect.Lists;
public class Category implements Serializable {
private String id;
private String label;
private List<Concept> concept = Lists.newArrayList();
public static Category newInstance(String id, String label) {
Category category = new Category();
category.setId(id);
category.setLabel(label);
return category;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public List<Concept> getConcept() {
return concept;
}
public void setConcept(List<Concept> concept) {
this.concept = concept;
}
}

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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class CodeLabel implements Serializable {
private static final long serialVersionUID = 8182033641583483845L;
private String code;
private String label;
public static CodeLabel newInstance(String code, String label) {
CodeLabel cl = new CodeLabel();
cl.setCode(code);
cl.setLabel(label);
return cl;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
}

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@ -1,34 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Concept implements Serializable {
private static final long serialVersionUID = -2309379406128410374L;
private String id;
private String label;
public static Concept newInstance(String id, String label) {
Concept concept = new Concept();
concept.setId(id);
concept.setLabel(label);
return concept;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
}

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@ -1,55 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
import com.google.common.collect.Lists;
public class Context implements Serializable {
private String id;
private String label;
private String type;
private List<Category> category = Lists.newArrayList();
public static Context newInstance(String id, String label, String type, List<Category> category) {
Context context = new Context();
context.setId(id);
context.setLabel(label);
context.setType(type);
context.setCategory(category);
return context;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public List<Category> getCategory() {
return category;
}
public void setCategory(List<Category> category) {
this.category = category;
}
}

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@ -1,49 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* Represents the country associated to the generic entity. The value for this element correspond to: - code corresponds
* to the classid of eu.dnetlib.dhp.schema.oaf.Country - label corresponds to the classname of
* eu.dnetlib.dhp.schema.oaf.Country - provenance set only if the dataInfo associated to the Country of the result to be
* dumped is not null. In this case : - provenance corresponds to dataInfo.provenanceaction.classid (to be modified with
* datainfo.provenanceaction.classname) - trust corresponds to dataInfo.trust
*/
public class Country implements Serializable {
private static final long serialVersionUID = 544249673120027949L;
/**
* ISO 3166-1 alpha-2 country code (i.e. IT)
*/
private String code; // the classid in the Qualifier
/**
* The label for that code (i.e. Italy)
*/
private String label; // the classname in the Qualifier
public static Country newInstance(String code, String label) {
Country c = new Country();
c.setCode(code);
c.setLabel(label);
return c;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
}

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@ -1,538 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Datasource implements Serializable {
private static final long serialVersionUID = -5817484869244344681L;
private CodeLabel datasourcetype;
private CodeLabel datasourcetypeui;
private CodeLabel eosctype; // Data Source | Service
private CodeLabel eoscdatasourcetype;
private CodeLabel openairecompatibility;
private String officialname;
private String englishname;
private String websiteurl;
private String logourl;
private String contactemail;
private String namespaceprefix;
private String latitude;
private String longitude;
private String dateofvalidation;
private String description;
private List<Subject> subjects;
private String odnumberofitems;
private String odnumberofitemsdate;
private String odpolicies;
private List<String> odlanguages;
private List<String> languages;
private List<String> odcontenttypes;
private List<String> accessinfopackage;
// re3data fields
private String releasestartdate;
private String releaseenddate;
private String missionstatementurl;
private Boolean dataprovider;
private Boolean serviceprovider;
// {open, restricted or closed}
private String databaseaccesstype;
// {open, restricted or closed}
private String datauploadtype;
// {feeRequired, registration, other}
private String databaseaccessrestriction;
// {feeRequired, registration, other}
private String datauploadrestriction;
private Boolean versioning;
private Boolean versioncontrol;
private String citationguidelineurl;
private String pidsystems;
private String certificates;
private List<CodeLabel> policies;
private Journal journal;
// New field for EOSC
private List<String> researchentitytypes;
// New field for EOSC
private List<String> providedproducttypes;
// New field for EOSC
private CodeLabel jurisdiction;
// New field for EOSC
private Boolean thematic;
// New field for EOSC
private List<CodeLabel> contentpolicies;
private String submissionpolicyurl;
private String preservationpolicyurl;
private List<String> researchproductaccesspolicies;
private List<String> researchproductmetadataaccesspolicies;
private Boolean consenttermsofuse;
private Boolean fulltextdownload;
private String consenttermsofusedate;
private String lastconsenttermsofusedate;
public CodeLabel getDatasourcetype() {
return datasourcetype;
}
public void setDatasourcetype(CodeLabel datasourcetype) {
this.datasourcetype = datasourcetype;
}
public CodeLabel getDatasourcetypeui() {
return datasourcetypeui;
}
public void setDatasourcetypeui(CodeLabel datasourcetypeui) {
this.datasourcetypeui = datasourcetypeui;
}
public CodeLabel getEosctype() {
return eosctype;
}
public void setEosctype(CodeLabel eosctype) {
this.eosctype = eosctype;
}
public CodeLabel getEoscdatasourcetype() {
return eoscdatasourcetype;
}
public void setEoscdatasourcetype(CodeLabel eoscdatasourcetype) {
this.eoscdatasourcetype = eoscdatasourcetype;
}
public CodeLabel getOpenairecompatibility() {
return openairecompatibility;
}
public void setOpenairecompatibility(CodeLabel openairecompatibility) {
this.openairecompatibility = openairecompatibility;
}
public String getOfficialname() {
return officialname;
}
public void setOfficialname(String officialname) {
this.officialname = officialname;
}
public String getEnglishname() {
return englishname;
}
public void setEnglishname(String englishname) {
this.englishname = englishname;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getLogourl() {
return logourl;
}
public void setLogourl(String logourl) {
this.logourl = logourl;
}
public String getContactemail() {
return contactemail;
}
public void setContactemail(String contactemail) {
this.contactemail = contactemail;
}
public String getNamespaceprefix() {
return namespaceprefix;
}
public void setNamespaceprefix(String namespaceprefix) {
this.namespaceprefix = namespaceprefix;
}
public String getLatitude() {
return latitude;
}
public void setLatitude(String latitude) {
this.latitude = latitude;
}
public String getLongitude() {
return longitude;
}
public void setLongitude(String longitude) {
this.longitude = longitude;
}
public String getDateofvalidation() {
return dateofvalidation;
}
public void setDateofvalidation(String dateofvalidation) {
this.dateofvalidation = dateofvalidation;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public List<Subject> getSubjects() {
return subjects;
}
public void setSubjects(List<Subject> subjects) {
this.subjects = subjects;
}
public String getOdnumberofitems() {
return odnumberofitems;
}
public void setOdnumberofitems(String odnumberofitems) {
this.odnumberofitems = odnumberofitems;
}
public String getOdnumberofitemsdate() {
return odnumberofitemsdate;
}
public void setOdnumberofitemsdate(String odnumberofitemsdate) {
this.odnumberofitemsdate = odnumberofitemsdate;
}
public String getOdpolicies() {
return odpolicies;
}
public void setOdpolicies(String odpolicies) {
this.odpolicies = odpolicies;
}
public List<String> getOdlanguages() {
return odlanguages;
}
public void setOdlanguages(List<String> odlanguages) {
this.odlanguages = odlanguages;
}
public List<String> getLanguages() {
return languages;
}
public void setLanguages(List<String> languages) {
this.languages = languages;
}
public List<String> getOdcontenttypes() {
return odcontenttypes;
}
public void setOdcontenttypes(List<String> odcontenttypes) {
this.odcontenttypes = odcontenttypes;
}
public List<String> getAccessinfopackage() {
return accessinfopackage;
}
public void setAccessinfopackage(List<String> accessinfopackage) {
this.accessinfopackage = accessinfopackage;
}
public String getReleasestartdate() {
return releasestartdate;
}
public void setReleasestartdate(String releasestartdate) {
this.releasestartdate = releasestartdate;
}
public String getReleaseenddate() {
return releaseenddate;
}
public void setReleaseenddate(String releaseenddate) {
this.releaseenddate = releaseenddate;
}
public String getMissionstatementurl() {
return missionstatementurl;
}
public void setMissionstatementurl(String missionstatementurl) {
this.missionstatementurl = missionstatementurl;
}
public Boolean getDataprovider() {
return dataprovider;
}
public void setDataprovider(Boolean dataprovider) {
this.dataprovider = dataprovider;
}
public Boolean getServiceprovider() {
return serviceprovider;
}
public void setServiceprovider(Boolean serviceprovider) {
this.serviceprovider = serviceprovider;
}
public String getDatabaseaccesstype() {
return databaseaccesstype;
}
public void setDatabaseaccesstype(String databaseaccesstype) {
this.databaseaccesstype = databaseaccesstype;
}
public String getDatauploadtype() {
return datauploadtype;
}
public void setDatauploadtype(String datauploadtype) {
this.datauploadtype = datauploadtype;
}
public String getDatabaseaccessrestriction() {
return databaseaccessrestriction;
}
public void setDatabaseaccessrestriction(String databaseaccessrestriction) {
this.databaseaccessrestriction = databaseaccessrestriction;
}
public String getDatauploadrestriction() {
return datauploadrestriction;
}
public void setDatauploadrestriction(String datauploadrestriction) {
this.datauploadrestriction = datauploadrestriction;
}
public Boolean getVersioning() {
return versioning;
}
public void setVersioning(Boolean versioning) {
this.versioning = versioning;
}
public Boolean getVersioncontrol() {
return versioncontrol;
}
public void setVersioncontrol(Boolean versioncontrol) {
this.versioncontrol = versioncontrol;
}
public String getCitationguidelineurl() {
return citationguidelineurl;
}
public void setCitationguidelineurl(String citationguidelineurl) {
this.citationguidelineurl = citationguidelineurl;
}
public String getPidsystems() {
return pidsystems;
}
public void setPidsystems(String pidsystems) {
this.pidsystems = pidsystems;
}
public String getCertificates() {
return certificates;
}
public void setCertificates(String certificates) {
this.certificates = certificates;
}
public List<CodeLabel> getPolicies() {
return policies;
}
public void setPolicies(List<CodeLabel> policies) {
this.policies = policies;
}
public Journal getJournal() {
return journal;
}
public void setJournal(Journal journal) {
this.journal = journal;
}
public List<String> getResearchentitytypes() {
return researchentitytypes;
}
public void setResearchentitytypes(List<String> researchentitytypes) {
this.researchentitytypes = researchentitytypes;
}
public List<String> getProvidedproducttypes() {
return providedproducttypes;
}
public void setProvidedproducttypes(List<String> providedproducttypes) {
this.providedproducttypes = providedproducttypes;
}
public CodeLabel getJurisdiction() {
return jurisdiction;
}
public void setJurisdiction(CodeLabel jurisdiction) {
this.jurisdiction = jurisdiction;
}
public Boolean getThematic() {
return thematic;
}
public void setThematic(Boolean thematic) {
this.thematic = thematic;
}
public List<CodeLabel> getContentpolicies() {
return contentpolicies;
}
public void setContentpolicies(List<CodeLabel> contentpolicies) {
this.contentpolicies = contentpolicies;
}
public String getSubmissionpolicyurl() {
return submissionpolicyurl;
}
public void setSubmissionpolicyurl(String submissionpolicyurl) {
this.submissionpolicyurl = submissionpolicyurl;
}
public String getPreservationpolicyurl() {
return preservationpolicyurl;
}
public void setPreservationpolicyurl(String preservationpolicyurl) {
this.preservationpolicyurl = preservationpolicyurl;
}
public List<String> getResearchproductaccesspolicies() {
return researchproductaccesspolicies;
}
public void setResearchproductaccesspolicies(List<String> researchproductaccesspolicies) {
this.researchproductaccesspolicies = researchproductaccesspolicies;
}
public List<String> getResearchproductmetadataaccesspolicies() {
return researchproductmetadataaccesspolicies;
}
public void setResearchproductmetadataaccesspolicies(List<String> researchproductmetadataaccesspolicies) {
this.researchproductmetadataaccesspolicies = researchproductmetadataaccesspolicies;
}
public Boolean getConsenttermsofuse() {
return consenttermsofuse;
}
public void setConsenttermsofuse(Boolean consenttermsofuse) {
this.consenttermsofuse = consenttermsofuse;
}
public Boolean getFulltextdownload() {
return fulltextdownload;
}
public void setFulltextdownload(Boolean fulltextdownload) {
this.fulltextdownload = fulltextdownload;
}
public String getConsenttermsofusedate() {
return consenttermsofusedate;
}
public void setConsenttermsofusedate(String consenttermsofusedate) {
this.consenttermsofusedate = consenttermsofusedate;
}
public String getLastconsenttermsofusedate() {
return lastconsenttermsofusedate;
}
public void setLastconsenttermsofusedate(String lastconsenttermsofusedate) {
this.lastconsenttermsofusedate = lastconsenttermsofusedate;
}
}

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@ -1,79 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.StringUtils;
/**
* Describes a reference to the EOSC Interoperability Framework (IF) Guidelines
*/
public class EoscIfGuidelines implements Serializable {
private static final long serialVersionUID = -6460491699309783829L;
/**
* EOSC-IF local code. Later on it could be populated with a PID (e.g. DOI), but for the time being we stick to
* a more loose definition.
*/
private String code;
/**
* EOSC-IF label
*/
private String label;
/**
* EOSC-IF url
*/
private String url;
/**
* EOSC-IF semantic relation (e.g. compliesWith). Values shall be controlled by a dedicated vocabulary.
*/
private String semanticRelation;
public static EoscIfGuidelines newInstance(String code, String label, String url, String semanticRelation) {
EoscIfGuidelines e = new EoscIfGuidelines();
e.setCode(code);
e.setLabel(label);
e.setUrl(url);
e.setSemanticRelation(semanticRelation);
return e;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public String getUrl() {
return url;
}
public void setUrl(String url) {
this.url = url;
}
public String getSemanticRelation() {
return semanticRelation;
}
public void setSemanticRelation(String semanticRelation) {
this.semanticRelation = semanticRelation;
}
}

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@ -1,10 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class ExtraInfo implements Serializable {
private static final long serialVersionUID = -6627854860189757709L;
//TODO define me!
}

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@ -1,66 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Funder implements Serializable {
private static final long serialVersionUID = -8008317145200052214L;
private String id;
private String shortname;
private String name;
private Country jurisdiction;
private List<Pid> pid;
public static Funder newInstance(String id, String shortname, String name, Country jurisdiction, List<Pid> pid) {
Funder funder = new Funder();
funder.setId(id);
funder.setShortname(shortname);
funder.setName(name);
funder.setJurisdiction(jurisdiction);
funder.setPid(pid);
return funder;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getShortname() {
return shortname;
}
public void setShortname(String shortname) {
this.shortname = shortname;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public Country getJurisdiction() {
return jurisdiction;
}
public void setJurisdiction(Country jurisdiction) {
this.jurisdiction = jurisdiction;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
}

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@ -1,62 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Funding implements Serializable {
private static final long serialVersionUID = 1811734787904369695L;
private Funder funder;
private FundingLevel level0;
private FundingLevel level1;
private FundingLevel level2;
public static Funding newInstance(Funder funder, FundingLevel level0) {
return newInstance(funder, level0, null, null);
}
public static Funding newInstance(Funder funder, FundingLevel level0, FundingLevel level1) {
return newInstance(funder, level0, level1, null);
}
public static Funding newInstance(Funder funder, FundingLevel level0, FundingLevel level1, FundingLevel level2) {
Funding funding = new Funding();
funding.setFunder(funder);
funding.setLevel0(level0);
funding.setLevel1(level1);
funding.setLevel2(level2);
return funding;
}
public Funder getFunder() {
return funder;
}
public void setFunder(Funder funder) {
this.funder = funder;
}
public FundingLevel getLevel0() {
return level0;
}
public void setLevel0(FundingLevel level0) {
this.level0 = level0;
}
public FundingLevel getLevel1() {
return level1;
}
public void setLevel1(FundingLevel level1) {
this.level1 = level1;
}
public FundingLevel getLevel2() {
return level2;
}
public void setLevel2(FundingLevel level2) {
this.level2 = level2;
}
}

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@ -1,46 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class FundingLevel implements Serializable {
private static final long serialVersionUID = 8270506546250477574L;
private String id;
private String description;
private String name;
public static FundingLevel newInstance(String id, String description, String name) {
FundingLevel level = new FundingLevel();
level.setId(id);
level.setDescription(description);
level.setName(name);
return level;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
}

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@ -1,155 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Instance implements Serializable {
private static final long serialVersionUID = 7440831757124257169L;
private String license;
private AccessRight accessright;
private String instancetype;
private Provenance hostedby;
private List<String> url;
// other research products specifc
private String distributionlocation;
private Provenance collectedfrom;
private List<Pid> pid;
private List<Pid> alternateIdentifier;
private String dateofacceptance;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed
// results
private APC processingcharges;
private String refereed; // peer-review status
private List<Measure> measures;
/**
* Direct fulltext URL.
*/
private String fulltext;
public String getLicense() {
return license;
}
public void setLicense(String license) {
this.license = license;
}
public AccessRight getAccessright() {
return accessright;
}
public void setAccessright(AccessRight accessright) {
this.accessright = accessright;
}
public String getInstancetype() {
return instancetype;
}
public void setInstancetype(String instancetype) {
this.instancetype = instancetype;
}
public Provenance getHostedby() {
return hostedby;
}
public void setHostedby(Provenance hostedby) {
this.hostedby = hostedby;
}
public List<String> getUrl() {
return url;
}
public void setUrl(List<String> url) {
this.url = url;
}
public String getDistributionlocation() {
return distributionlocation;
}
public void setDistributionlocation(String distributionlocation) {
this.distributionlocation = distributionlocation;
}
public Provenance getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(Provenance collectedfrom) {
this.collectedfrom = collectedfrom;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
public List<Pid> getAlternateIdentifier() {
return alternateIdentifier;
}
public void setAlternateIdentifier(List<Pid> alternateIdentifier) {
this.alternateIdentifier = alternateIdentifier;
}
public String getDateofacceptance() {
return dateofacceptance;
}
public void setDateofacceptance(String dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public APC getProcessingcharges() {
return processingcharges;
}
public void setProcessingcharges(APC processingcharges) {
this.processingcharges = processingcharges;
}
public String getRefereed() {
return refereed;
}
public void setRefereed(String refereed) {
this.refereed = refereed;
}
public List<Measure> getMeasures() {
return measures;
}
public void setMeasures(List<Measure> measures) {
this.measures = measures;
}
public String getFulltext() {
return fulltext;
}
public void setFulltext(String fulltext) {
this.fulltext = fulltext;
}
}

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@ -1,145 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Journal implements Serializable {
private static final long serialVersionUID = -103050431178898773L;
/**
* Name of the journal or conference
*/
private String name;
/**
* The issn
*/
private String issnPrinted;
/**
* The e-issn
*/
private String issnOnline;
/**
* The kinking issn
*/
private String issnLinking;
/**
* Start page
*/
private String sp;
/**
* End page
*/
private String ep;
/**
* Journal issue number
*/
private String iss;
/**
* Volume
*/
private String vol;
/**
* Edition of the journal or conference proceeding
*/
private String edition;
private String conferenceplace;
private String conferencedate;
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getIssnPrinted() {
return issnPrinted;
}
public void setIssnPrinted(String issnPrinted) {
this.issnPrinted = issnPrinted;
}
public String getIssnOnline() {
return issnOnline;
}
public void setIssnOnline(String issnOnline) {
this.issnOnline = issnOnline;
}
public String getIssnLinking() {
return issnLinking;
}
public void setIssnLinking(String issnLinking) {
this.issnLinking = issnLinking;
}
public String getSp() {
return sp;
}
public void setSp(String sp) {
this.sp = sp;
}
public String getEp() {
return ep;
}
public void setEp(String ep) {
this.ep = ep;
}
public String getIss() {
return iss;
}
public void setIss(String iss) {
this.iss = iss;
}
public String getVol() {
return vol;
}
public void setVol(String vol) {
this.vol = vol;
}
public String getEdition() {
return edition;
}
public void setEdition(String edition) {
this.edition = edition;
}
public String getConferenceplace() {
return conferenceplace;
}
public void setConferenceplace(String conferenceplace) {
this.conferenceplace = conferenceplace;
}
public String getConferencedate() {
return conferencedate;
}
public void setConferencedate(String conferencedate) {
this.conferencedate = conferencedate;
}
}

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@ -1,42 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Language implements Serializable {
private static final long serialVersionUID = -8308628905005193974L;
/**
* alpha-3/ISO 639-2 code of the language
*/
private String code; // the classid in the Qualifier
/**
* Language label in English
*/
private String label; // the classname in the Qualifier
public static Language newInstance(String code, String label) {
Language lang = new Language();
lang.setCode(code);
lang.setLabel(label);
return lang;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
}

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@ -1,10 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Measure implements Serializable {
private static final long serialVersionUID = 57939927121851504L;
//TODO define me!
}

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@ -1,13 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* The OpenAccess color meant to be used on the result level
*/
public enum OpenAccessColor implements Serializable {
gold, hybrid, bronze
}

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@ -1,15 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
/**
* This Enum models the OpenAccess status, currently including only the values from Unpaywall
*
* https://support.unpaywall.org/support/solutions/articles/44001777288-what-do-the-types-of-oa-status-green-gold-hybrid-and-bronze-mean-
*/
public enum OpenAccessRoute implements Serializable {
gold, green, hybrid, bronze
}

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@ -1,169 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Organization implements Serializable {
private static final long serialVersionUID = -4287924905285274034L;
private String legalshortname;
private String legalname;
private List<String> alternativeNames;
private String websiteurl;
private String logourl;
private String eclegalbody;
private String eclegalperson;
private String ecnonprofit;
private String ecresearchorganization;
private String echighereducation;
private String ecinternationalorganizationeurinterests;
private String ecinternationalorganization;
private String ecenterprise;
private String ecsmevalidated;
private String ecnutscode;
private CodeLabel country;
public String getLegalshortname() {
return legalshortname;
}
public void setLegalshortname(String legalshortname) {
this.legalshortname = legalshortname;
}
public String getLegalname() {
return legalname;
}
public void setLegalname(String legalname) {
this.legalname = legalname;
}
public List<String> getAlternativeNames() {
return alternativeNames;
}
public void setAlternativeNames(List<String> alternativeNames) {
this.alternativeNames = alternativeNames;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getLogourl() {
return logourl;
}
public void setLogourl(String logourl) {
this.logourl = logourl;
}
public String getEclegalbody() {
return eclegalbody;
}
public void setEclegalbody(String eclegalbody) {
this.eclegalbody = eclegalbody;
}
public String getEclegalperson() {
return eclegalperson;
}
public void setEclegalperson(String eclegalperson) {
this.eclegalperson = eclegalperson;
}
public String getEcnonprofit() {
return ecnonprofit;
}
public void setEcnonprofit(String ecnonprofit) {
this.ecnonprofit = ecnonprofit;
}
public String getEcresearchorganization() {
return ecresearchorganization;
}
public void setEcresearchorganization(String ecresearchorganization) {
this.ecresearchorganization = ecresearchorganization;
}
public String getEchighereducation() {
return echighereducation;
}
public void setEchighereducation(String echighereducation) {
this.echighereducation = echighereducation;
}
public String getEcinternationalorganizationeurinterests() {
return ecinternationalorganizationeurinterests;
}
public void setEcinternationalorganizationeurinterests(String ecinternationalorganizationeurinterests) {
this.ecinternationalorganizationeurinterests = ecinternationalorganizationeurinterests;
}
public String getEcinternationalorganization() {
return ecinternationalorganization;
}
public void setEcinternationalorganization(String ecinternationalorganization) {
this.ecinternationalorganization = ecinternationalorganization;
}
public String getEcenterprise() {
return ecenterprise;
}
public void setEcenterprise(String ecenterprise) {
this.ecenterprise = ecenterprise;
}
public String getEcsmevalidated() {
return ecsmevalidated;
}
public void setEcsmevalidated(String ecsmevalidated) {
this.ecsmevalidated = ecsmevalidated;
}
public String getEcnutscode() {
return ecnutscode;
}
public void setEcnutscode(String ecnutscode) {
this.ecnutscode = ecnutscode;
}
public CodeLabel getCountry() {
return country;
}
public void setCountry(CodeLabel country) {
this.country = country;
}
}

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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Pid implements Serializable {
private static final long serialVersionUID = -943684282582228545L;
private String type;
private String value;
public static Pid newInstance(String type, String value) {
Pid p = new Pid();
p.setType(type);
p.setValue(value);
return p;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
}

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@ -1,183 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class Project implements Serializable {
private static final long serialVersionUID = -3712733565189222788L;
private String websiteurl;
private String code;
private String acronym;
private String title;
private String startdate;
private String enddate;
private String callidentifier;
private String keywords;
private String duration;
private String oamandatepublications;
private String ecarticle29_3;
private List<Subject> subjects;
private CodeLabel contracttype;
private String summary;
private String currency;
private Float totalcost;
private Float fundedamount;
private Funding funding;
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getAcronym() {
return acronym;
}
public void setAcronym(String acronym) {
this.acronym = acronym;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getStartdate() {
return startdate;
}
public void setStartdate(String startdate) {
this.startdate = startdate;
}
public String getEnddate() {
return enddate;
}
public void setEnddate(String enddate) {
this.enddate = enddate;
}
public String getCallidentifier() {
return callidentifier;
}
public void setCallidentifier(String callidentifier) {
this.callidentifier = callidentifier;
}
public String getKeywords() {
return keywords;
}
public void setKeywords(String keywords) {
this.keywords = keywords;
}
public String getDuration() {
return duration;
}
public void setDuration(String duration) {
this.duration = duration;
}
public String getOamandatepublications() {
return oamandatepublications;
}
public void setOamandatepublications(String oamandatepublications) {
this.oamandatepublications = oamandatepublications;
}
public String getEcarticle29_3() {
return ecarticle29_3;
}
public void setEcarticle29_3(String ecarticle29_3) {
this.ecarticle29_3 = ecarticle29_3;
}
public List<Subject> getSubjects() {
return subjects;
}
public void setSubjects(List<Subject> subjects) {
this.subjects = subjects;
}
public CodeLabel getContracttype() {
return contracttype;
}
public void setContracttype(CodeLabel contracttype) {
this.contracttype = contracttype;
}
public String getSummary() {
return summary;
}
public void setSummary(String summary) {
this.summary = summary;
}
public String getCurrency() {
return currency;
}
public void setCurrency(String currency) {
this.currency = currency;
}
public Float getTotalcost() {
return totalcost;
}
public void setTotalcost(Float totalcost) {
this.totalcost = totalcost;
}
public Float getFundedamount() {
return fundedamount;
}
public void setFundedamount(Float fundedamount) {
this.fundedamount = fundedamount;
}
public Funding getFunding() {
return funding;
}
public void setFunding(Funding funding) {
this.funding = funding;
}
}

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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Provenance implements Serializable {
private static final long serialVersionUID = -474833313621479191L;
private String dsId;
private String dsName;
public static Provenance newInstance(String dsId, String dsName) {
Provenance p = new Provenance();
p.setDsId(dsId);
p.setDsName(dsName);
return p;
}
public String getDsId() {
return dsId;
}
public void setDsId(String dsId) {
this.dsId = dsId;
}
public String getDsName() {
return dsName;
}
public void setDsName(String dsName) {
this.dsName = dsName;
}
}

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@ -1,14 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public enum RecordType implements Serializable {
publication,
dataset,
otherresearchproduct,
software,
datasource,
organization,
project;
}

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@ -1,218 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class RelatedRecord implements Serializable {
private static final long serialVersionUID = -7251015928787319389L;
private RelatedRecordHeader header;
// common fields
private String title;
private String websiteurl; // datasource, organizations, projects
// results
private String dateofacceptance;
private String publisher;
private List<Pid> pid;
private String codeRepositoryUrl;
private String resulttype;
private List<Provenance> collectedfrom;
private List<Instance> instances;
// datasource
private String officialname;
private CodeLabel datasourcetype;
private CodeLabel datasourcetypeui;
private CodeLabel openairecompatibility;
// organization
private String legalname;
private String legalshortname;
private Country country;
// project
private String projectTitle;
private String code;
private String acronym;
private CodeLabel contracttype;
private Funding funding;
public RelatedRecordHeader getHeader() {
return header;
}
public void setHeader(RelatedRecordHeader header) {
this.header = header;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getDateofacceptance() {
return dateofacceptance;
}
public void setDateofacceptance(String dateofacceptance) {
this.dateofacceptance = dateofacceptance;
}
public String getPublisher() {
return publisher;
}
public void setPublisher(String publisher) {
this.publisher = publisher;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
public String getCodeRepositoryUrl() {
return codeRepositoryUrl;
}
public void setCodeRepositoryUrl(String codeRepositoryUrl) {
this.codeRepositoryUrl = codeRepositoryUrl;
}
public String getResulttype() {
return resulttype;
}
public void setResulttype(String resulttype) {
this.resulttype = resulttype;
}
public List<Provenance> getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(List<Provenance> collectedfrom) {
this.collectedfrom = collectedfrom;
}
public List<Instance> getInstances() {
return instances;
}
public void setInstances(List<Instance> instances) {
this.instances = instances;
}
public String getOfficialname() {
return officialname;
}
public void setOfficialname(String officialname) {
this.officialname = officialname;
}
public CodeLabel getDatasourcetype() {
return datasourcetype;
}
public void setDatasourcetype(CodeLabel datasourcetype) {
this.datasourcetype = datasourcetype;
}
public CodeLabel getDatasourcetypeui() {
return datasourcetypeui;
}
public void setDatasourcetypeui(CodeLabel datasourcetypeui) {
this.datasourcetypeui = datasourcetypeui;
}
public CodeLabel getOpenairecompatibility() {
return openairecompatibility;
}
public void setOpenairecompatibility(CodeLabel openairecompatibility) {
this.openairecompatibility = openairecompatibility;
}
public String getLegalname() {
return legalname;
}
public void setLegalname(String legalname) {
this.legalname = legalname;
}
public String getLegalshortname() {
return legalshortname;
}
public void setLegalshortname(String legalshortname) {
this.legalshortname = legalshortname;
}
public Country getCountry() {
return country;
}
public void setCountry(Country country) {
this.country = country;
}
public String getProjectTitle() {
return projectTitle;
}
public void setProjectTitle(String projectTitle) {
this.projectTitle = projectTitle;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getAcronym() {
return acronym;
}
public void setAcronym(String acronym) {
this.acronym = acronym;
}
public CodeLabel getContracttype() {
return contracttype;
}
public void setContracttype(CodeLabel contracttype) {
this.contracttype = contracttype;
}
public Funding getFunding() {
return funding;
}
public void setFunding(Funding funding) {
this.funding = funding;
}
}

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@ -1,57 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class RelatedRecordHeader implements Serializable {
private static final long serialVersionUID = -1491635071695452382L;
private String relationType;
private String relationClass;
private String relatedIdentifier;
private RecordType relatedRecordType;
public static RelatedRecordHeader newInstance(String relationType, String relationClass, String relatedIdentifier, RecordType relatedRecordType) {
RelatedRecordHeader header = new RelatedRecordHeader();
header.setRelationType(relationType);
header.setRelationClass(relationClass);
header.setRelatedIdentifier(relatedIdentifier);
header.setRelatedRecordType(relatedRecordType);
return header;
}
public String getRelationType() {
return relationType;
}
public void setRelationType(String relationType) {
this.relationType = relationType;
}
public String getRelationClass() {
return relationClass;
}
public void setRelationClass(String relationClass) {
this.relationClass = relationClass;
}
public String getRelatedIdentifier() {
return relatedIdentifier;
}
public void setRelatedIdentifier(String relatedIdentifier) {
this.relatedIdentifier = relatedIdentifier;
}
public RecordType getRelatedRecordType() {
return relatedRecordType;
}
public void setRelatedRecordType(RecordType relatedRecordType) {
this.relatedRecordType = relatedRecordType;
}
}

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@ -1,431 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonProperty;
public class Result implements Serializable {
private static final long serialVersionUID = -9121038426985022737L;
/**
* Type of the result: one of 'publication', 'dataset', 'software', 'other' (see also https://api.openaire.eu/vocabularies/dnet:result_typologies)
*/
private String resulttype;
/**
* Authors of the result
*/
private List<Author> author;
/**
* The Subject.
*/
private List<Subject> subject;
/**
* The result language
*/
private Language language;
/**
* The list of countries associated to this result
*/
private List<Country> country;
/**
* A name or title by which a scientific result is known. May be the title of a publication, of a dataset or the name of a piece of software.
*/
private String maintitle;
/**
* Explanatory or alternative names by which a scientific result is known.
*/
private List<String> otherTitles;
private List<String> description;
/**
* Main date of the research product: typically the publication or issued date. In case of a research result with
* different versions with different dates, the date of the result is selected as the most frequent well-formatted date.
* If not available, then the most recent and complete date among those that are well-formatted.
* For statistics, the year is extracted and the result is counted only among the result of that year.
* Example:
* Pre-print date: 2019-02-03,
* Article date provided by repository: 2020-02,
* Article date provided by Crossref: 2020,
* OpenAIRE will set as date 2019-02-03, because its the most recent among the complete and well-formed dates.
* If then the repository updates the metadata and set a complete date (e.g. 2020-02-12), then this will be the new
* date for the result because it becomes the most recent most complete date.
* However, if OpenAIRE then collects the pre-print from another repository with date 2019-02-03, then this will be
* the winning date because it becomes the most frequent well-formatted date.
*/
private String publicationdate; // dateofacceptance
/**
* The name of the entity that holds, archives, publishes prints, distributes, releases, issues, or produces the resource.
*/
private String publisher;
/**
* Date when the embargo ends and this result turns Open Access
*/
private String embargoenddate;
/**
* See definition of Dublin Core field dc:source
*/
private List<String> source;
private List<String> format;
/**
* Contributors for the result
*/
private List<String> contributor;
private List<String> coverage;
/**
* The openest of the access rights of this result.
*/
private BestAccessRight bestaccessright;
/**
* The direct link to the full-text as collected from the data source
*/
private List<String> fulltext;
/**
* Journal has information about the conference or journal where the result has been presented or published
*/
private Journal journal;
/**
* Only for results with type 'software': URL to the software documentation
*/
private List<String> documentationUrl; // software
/**
* Only for results with type 'software': the URL to the repository with the source code
*/
private String codeRepositoryUrl; // software
/**
* Only for results with type 'software': the programming language
*/
private String programmingLanguage; // software
/**
* Only for results with type 'software': Information on the person responsible for providing further information regarding the resource
*/
private List<String> contactperson; // orp
/**
* Only for results with type 'software': Information on the group responsible for providing further information regarding the resource
*/
private List<String> contactgroup; // orp
/**
* Only for results with type 'other': tool useful for the interpretation and/or re-used of the research product
*/
private List<String> tool; // orp
/**
* Only for results with type 'dataset': the declared size of the dataset
*/
private String size; // dataset
/**
* Version of the result
*/
private String version; // dataset
/**
* EOSC Interoperability Framework Guidelines
*/
private List<EoscIfGuidelines> eoscifguidelines;
@JsonProperty("isGreen")
private Boolean isGreen;
private OpenAccessColor openAccessColor;
@JsonProperty("isInDiamondJournal")
private Boolean isInDiamondJournal;
private Boolean publiclyFunded;
private String transformativeAgreement;
/**
* Each instance is one specific materialisation or version of the result. For example, you can have one result with
* three instance: one is the pre-print, one is the post-print, one is te published version
*/
private List<Instance> instance;
public String getResulttype() {
return resulttype;
}
public void setResulttype(String resulttype) {
this.resulttype = resulttype;
}
public List<Author> getAuthor() {
return author;
}
public void setAuthor(List<Author> author) {
this.author = author;
}
public List<Subject> getSubject() {
return subject;
}
public void setSubject(List<Subject> subject) {
this.subject = subject;
}
public Language getLanguage() {
return language;
}
public void setLanguage(Language language) {
this.language = language;
}
public List<Country> getCountry() {
return country;
}
public void setCountry(List<Country> country) {
this.country = country;
}
public String getMaintitle() {
return maintitle;
}
public void setMaintitle(String maintitle) {
this.maintitle = maintitle;
}
public List<String> getOtherTitles() {
return otherTitles;
}
public void setOtherTitles(List<String> otherTitles) {
this.otherTitles = otherTitles;
}
public List<String> getDescription() {
return description;
}
public void setDescription(List<String> description) {
this.description = description;
}
public String getPublicationdate() {
return publicationdate;
}
public void setPublicationdate(String publicationdate) {
this.publicationdate = publicationdate;
}
public String getPublisher() {
return publisher;
}
public void setPublisher(String publisher) {
this.publisher = publisher;
}
public String getEmbargoenddate() {
return embargoenddate;
}
public void setEmbargoenddate(String embargoenddate) {
this.embargoenddate = embargoenddate;
}
public List<String> getSource() {
return source;
}
public void setSource(List<String> source) {
this.source = source;
}
public List<String> getFormat() {
return format;
}
public void setFormat(List<String> format) {
this.format = format;
}
public List<String> getContributor() {
return contributor;
}
public void setContributor(List<String> contributor) {
this.contributor = contributor;
}
public List<String> getCoverage() {
return coverage;
}
public void setCoverage(List<String> coverage) {
this.coverage = coverage;
}
public BestAccessRight getBestaccessright() {
return bestaccessright;
}
public void setBestaccessright(BestAccessRight bestaccessright) {
this.bestaccessright = bestaccessright;
}
public List<String> getFulltext() {
return fulltext;
}
public void setFulltext(List<String> fulltext) {
this.fulltext = fulltext;
}
public Journal getJournal() {
return journal;
}
public void setJournal(Journal journal) {
this.journal = journal;
}
public List<String> getDocumentationUrl() {
return documentationUrl;
}
public void setDocumentationUrl(List<String> documentationUrl) {
this.documentationUrl = documentationUrl;
}
public String getCodeRepositoryUrl() {
return codeRepositoryUrl;
}
public void setCodeRepositoryUrl(String codeRepositoryUrl) {
this.codeRepositoryUrl = codeRepositoryUrl;
}
public String getProgrammingLanguage() {
return programmingLanguage;
}
public void setProgrammingLanguage(String programmingLanguage) {
this.programmingLanguage = programmingLanguage;
}
public List<String> getContactperson() {
return contactperson;
}
public void setContactperson(List<String> contactperson) {
this.contactperson = contactperson;
}
public List<String> getContactgroup() {
return contactgroup;
}
public void setContactgroup(List<String> contactgroup) {
this.contactgroup = contactgroup;
}
public List<String> getTool() {
return tool;
}
public void setTool(List<String> tool) {
this.tool = tool;
}
public String getSize() {
return size;
}
public void setSize(String size) {
this.size = size;
}
public String getVersion() {
return version;
}
public void setVersion(String version) {
this.version = version;
}
public List<EoscIfGuidelines> getEoscifguidelines() {
return eoscifguidelines;
}
public void setEoscifguidelines(List<EoscIfGuidelines> eoscifguidelines) {
this.eoscifguidelines = eoscifguidelines;
}
public Boolean getGreen() {
return isGreen;
}
public void setGreen(Boolean green) {
isGreen = green;
}
public OpenAccessColor getOpenAccessColor() {
return openAccessColor;
}
public void setOpenAccessColor(OpenAccessColor openAccessColor) {
this.openAccessColor = openAccessColor;
}
public Boolean getInDiamondJournal() {
return isInDiamondJournal;
}
public void setInDiamondJournal(Boolean inDiamondJournal) {
isInDiamondJournal = inDiamondJournal;
}
public Boolean getPubliclyFunded() {
return publiclyFunded;
}
public void setPubliclyFunded(Boolean publiclyFunded) {
this.publiclyFunded = publiclyFunded;
}
public String getTransformativeAgreement() {
return transformativeAgreement;
}
public void setTransformativeAgreement(String transformativeAgreement) {
this.transformativeAgreement = transformativeAgreement;
}
public List<Instance> getInstance() {
return instance;
}
public void setInstance(List<Instance> instance) {
this.instance = instance;
}
}

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@ -1,122 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class SolrRecord implements Serializable {
private static final long serialVersionUID = 2852901817696335899L;
private SolrRecordHeader header;
private List<Provenance> collectedfrom;
/**
* List of persistent identifiers
*/
private List<Pid> pid;
private List<Context> context;
private List<Measure> measures;
private List<ExtraInfo> extraInfo;
private Result result;
private Datasource datasource;
private Project project;
private Organization organization;
private List<RelatedRecord> links;
public SolrRecordHeader getHeader() {
return header;
}
public void setHeader(SolrRecordHeader header) {
this.header = header;
}
public List<Provenance> getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(List<Provenance> collectedfrom) {
this.collectedfrom = collectedfrom;
}
public List<Pid> getPid() {
return pid;
}
public void setPid(List<Pid> pid) {
this.pid = pid;
}
public List<Context> getContext() {
return context;
}
public void setContext(List<Context> context) {
this.context = context;
}
public List<Measure> getMeasures() {
return measures;
}
public void setMeasures(List<Measure> measures) {
this.measures = measures;
}
public List<ExtraInfo> getExtraInfo() {
return extraInfo;
}
public void setExtraInfo(List<ExtraInfo> extraInfo) {
this.extraInfo = extraInfo;
}
public Result getResult() {
return result;
}
public void setResult(Result result) {
this.result = result;
}
public Datasource getDatasource() {
return datasource;
}
public void setDatasource(Datasource datasource) {
this.datasource = datasource;
}
public Project getProject() {
return project;
}
public void setProject(Project project) {
this.project = project;
}
public Organization getOrganization() {
return organization;
}
public void setOrganization(Organization organization) {
this.organization = organization;
}
public List<RelatedRecord> getLinks() {
return links;
}
public void setLinks(List<RelatedRecord> links) {
this.links = links;
}
}

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@ -1,64 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
import java.util.List;
public class SolrRecordHeader implements Serializable {
private static final long serialVersionUID = -6052397109220149426L;
/**
* The OpenAIRE identifiers for this record
*/
private String id;
/**
* Identifiers of the record at the original sources
*/
private List<String> originalId;
private RecordType recordType;
private Boolean deletedbyinference;
public static SolrRecordHeader newInstance(String id, List<String> originalId, RecordType recordType, Boolean deletedbyinference) {
SolrRecordHeader header = new SolrRecordHeader();
header.setId(id);
header.setOriginalId(originalId);
header.setRecordType(recordType);
header.setDeletedbyinference(deletedbyinference);
return header;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public List<String> getOriginalId() {
return originalId;
}
public void setOriginalId(List<String> originalId) {
this.originalId = originalId;
}
public RecordType getRecordType() {
return recordType;
}
public void setRecordType(RecordType recordType) {
this.recordType = recordType;
}
public Boolean getDeletedbyinference() {
return deletedbyinference;
}
public void setDeletedbyinference(Boolean deletedbyinference) {
this.deletedbyinference = deletedbyinference;
}
}

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@ -1,35 +0,0 @@
package eu.dnetlib.dhp.schema.solr;
import java.io.Serializable;
public class Subject implements Serializable {
private static final long serialVersionUID = -7242293435544930481L;
private String value;
private String type;
public static Subject newInstance(String value, String type) {
Subject s = new Subject();
s.setValue(value);
s.setType(type);
return s;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
}

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@ -0,0 +1,709 @@
package eu.dnetlib.dhp.schema.oaf;
import static org.junit.jupiter.api.Assertions.*;
import java.io.IOException;
import java.io.InputStream;
import java.time.format.DateTimeParseException;
import java.util.Arrays;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Lists;
/**
* The type Merge test.
*/
class MergeTest {
/**
* The Oaf.
*/
OafEntity oaf;
/**
* Sets up.
*/
@BeforeEach
public void setUp() {
oaf = new Publication();
}
/**
* Merge lists test.
*/
@Test
@SuppressWarnings("unchecked")
void mergeListsTest() {
// string list merge test
List<String> a = Arrays.asList("a", "b", "c", "e");
List<String> b = Arrays.asList("a", "b", "c", "d");
List<String> c = null;
System.out.println("merge result 1 = " + oaf.mergeLists(a, b));
System.out.println("merge result 2 = " + oaf.mergeLists(a, c));
System.out.println("merge result 3 = " + oaf.mergeLists(c, c));
}
/**
* Merge publication collected from test.
*/
@Test
void mergePublicationCollectedFromTest() {
Publication a = publication();
Publication b = publication();
a.setCollectedfrom(Arrays.asList(setKV("a", "open"), setKV("b", "closed")));
b.setCollectedfrom(Arrays.asList(setKV("A", "open"), setKV("b", "Open")));
a.mergeFrom(b);
assertNotNull(a.getCollectedfrom());
assertEquals(3, a.getCollectedfrom().size());
}
/**
* Load resource result list.
*
* @param <T> the type parameter
* @param path the path
* @param clazz the clazz
* @return the list
* @throws Exception the exception
*/
private <T extends Result> List<Result> loadResourceResult(final String path, final Class<T> clazz ) throws Exception {
final ObjectMapper mapper = new ObjectMapper();
final InputStream str = Objects.requireNonNull(getClass().getResourceAsStream(path));
// LOAD test publications
return IOUtils.readLines(str).stream().map(s -> {
try {
return mapper.readValue(s, clazz);
} catch (IOException e) {
return null;
}
}).filter(Objects::nonNull).collect(Collectors.toList());
}
/**
* Apply to any test list result the same pid of the enrichment instance
*
* @param source the source
* @param enrichment the enrichment
* @param overrideAlternateIdentifier the override alternate identifier
*/
private void updatePidIntoPublicationInstance(final List<Result> source, final List<Result>enrichment, final boolean overrideAlternateIdentifier) {
for(int i = 0 ; i< source.size(); i++) {
final Result currentPub = source.get(i);
final Result currentEnrichment = enrichment.get(i);
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
if (overrideAlternateIdentifier)
currentInstance.setAlternateIdentifier(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
else
currentInstance.setPid(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
}
}
private void applyAndVerifyEnrichment(final List<Result> l1, final List<Result> l2) {
// Apply Merge and verify that enrichments works
for(int i = 0 ; i< l1.size(); i++) {
final Result currentPub = l2.get(i);
final Result currentEnrichment = l1.get(i);
currentPub.mergeFrom(currentEnrichment);
assertEquals(1, currentPub.getInstance().size());
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
assertNotNull(currentInstance.getMeasures());
assertNotNull(currentPub.getTitle());
assertFalse(Result.isAnEnrichment(currentPub));
}
}
/**
* Test the merge of the APC at the level of the result and the instance.
*
* @throws Exception the exception
*/
@Test
void testAPCMerge() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_apc.json", Publication.class);
System.out.println(publications.size());
publications.forEach(p -> assertEquals(1, p.getInstance().size()));
publications.forEach(p -> assertNotNull(p.getProcessingchargeamount()));
publications.forEach(p -> assertNotNull(p.getProcessingchargecurrency()));
publications.forEach(p -> assertTrue(StringUtils.isNotBlank(p.getProcessingchargeamount().getValue() )));
publications.forEach(p -> assertTrue(StringUtils.isNotBlank(p.getProcessingchargecurrency().getValue() )));
publications.forEach(p -> p.getInstance().forEach(i -> assertNotNull(i.getProcessingchargeamount())));
publications.forEach(p -> p.getInstance().forEach(i -> assertNotNull(i.getProcessingchargecurrency())));
publications.forEach(p -> p.getInstance().forEach(i -> assertTrue(StringUtils.isNotBlank(i.getProcessingchargeamount().getValue()))));
publications.forEach(p -> p.getInstance().forEach(i -> assertTrue(StringUtils.isNotBlank(i.getProcessingchargecurrency().getValue()))));
Result p1 = publications.get(0);
Result p2 = publications.get(1);
p1.mergeFrom(p2);
assertEquals("1721.47", p1.getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getProcessingchargecurrency().getValue());
assertEquals(2 , p1.getInstance().size());
p1.getInstance().forEach(i -> assertNotNull(i.getProcessingchargeamount()));
p1.getInstance().forEach(i -> assertNotNull(i.getProcessingchargecurrency()));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount().getValue().equals("2000.47")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount().getValue().equals("1721.47")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency().getValue().equals("EUR")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency().getValue().equals("USD")));
System.out.println(new ObjectMapper().writeValueAsString(p1));
}
@Test
void testAPCMerge2() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_apc2.json", Publication.class);
System.out.println(publications.size());
publications.forEach(p -> assertEquals(1, p.getInstance().size()));
assertNotNull(publications.get(0).getProcessingchargeamount());
assertNotNull(publications.get(0).getProcessingchargecurrency());
assertNull(publications.get(1).getProcessingchargeamount());
Result p1 = publications.get(1);
Result p2 = publications.get(0);
//merge visible record with OpenAPC
p1.mergeFrom(p2);
assertFalse(p1.getDataInfo().getInvisible());
assertEquals("1721.47", p1.getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getProcessingchargecurrency().getValue());
assertEquals(2 , p1.getInstance().size());
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount() != null));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency() != null));
assertEquals("1721.47", p1.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargecurrency().getValue());
assertFalse(p1.getDataInfo().getInvisible());
System.out.println(new ObjectMapper().writeValueAsString(p1));
//merge OpenAPC with visible record
p2.mergeFrom(p1);
assertFalse(p2.getDataInfo().getInvisible());
assertEquals("1721.47", p2.getProcessingchargeamount().getValue());
assertEquals("EUR", p2.getProcessingchargecurrency().getValue());
assertEquals(2 , p2.getInstance().size());
assertTrue(p2.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount() != null));
assertTrue(p2.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency() != null));
assertEquals("1721.47", p2.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargeamount().getValue());
assertEquals("EUR", p2.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargecurrency().getValue());
}
@Test
void test_merge_irish_1() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_1.json", Publication.class);
Publication p = new Publication();
publications.forEach(p::mergeFrom);
assertNotNull(p);
assertTrue(p.getIsGreen());
assertTrue(p.getIsInDiamondJournal());
assertFalse(p.getPubliclyFunded());
assertEquals(OpenAccessColor.gold, p.getOpenAccessColor());
}
@Test
void test_merge_irish_2() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_2.json", Publication.class);
Publication p = new Publication();
publications.forEach(p::mergeFrom);
assertNotNull(p);
assertTrue(p.getIsGreen());
assertTrue(p.getIsInDiamondJournal());
assertFalse(p.getPubliclyFunded());
assertNull(p.getOpenAccessColor());
}
/**
* Test enrichment function.
*
* @throws Exception the exception
*/
@Test
void testEnrichment() throws Exception {
// 1 TEST UPDATING PID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
// LOAD test publications
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
// Assert that each publication has only one instance and inside that all the measure field is empty
publications.forEach(p -> {
assertEquals(1, p.getInstance().size());
final Instance currentInstance = Objects.requireNonNull(p.getInstance()).get(0);
assertNull(currentInstance.getMeasures());
});
// LOAD test enrichments
List<Result> enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, false);
applyAndVerifyEnrichment(publications, enrichment);
// 2 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, true);
applyAndVerifyEnrichment(publications, enrichment);
// 3 TEST UPDATING PID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, false);
applyAndVerifyEnrichment( enrichment, publications);
// 4 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, true);
applyAndVerifyEnrichment( enrichment, publications);
}
/**
* Merge publication date of acceptance test both present.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent() {
Publication a = publication();
Publication b = publication();
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test both present 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent_1() {
Publication a = publication("0.8");
Publication b = publication("0.9");
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test both present 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent_2() {
Publication a = publication("0.9");
Publication b = publication("0.8");
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing() {
Publication a = publication();
Publication b = publication();
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing_1() {
Publication a = publication("0.9");
Publication b = publication("0.8");
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing_2() {
Publication a = publication("0.8");
Publication b = publication("0.9");
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing() {
Publication a = publication();
Publication b = publication();
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing_1() {
Publication a = publication("0.8");
Publication b = publication("0.9");
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing_2() {
Publication a = publication("0.9");
Publication b = publication("0.8");
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication subject test.
*/
@Test
void mergePublicationSubjectTest() {
Publication a = publication();
Publication b = publication();
a.setSubject(Arrays.asList(setSub("a", "open", "classe"), setSub("b", "open", "classe")));
b.setSubject(Arrays.asList(setSub("A", "open", "classe"), setSub("c", "open", "classe")));
a.mergeFrom(b);
assertNotNull(a.getSubject());
assertEquals(3, a.getSubject().size());
}
/**
* Merge publication EoscIfGuidelines test.
*/
@Test
void mergePublicationEoscIfGuidelinesTest() {
Publication a = publication();
Publication b = publication();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
a.mergeFrom(b);
assertNotNull(a.getEoscifguidelines());
assertEquals(1, a.getEoscifguidelines().size());
a.getEoscifguidelines().clear();
b.getEoscifguidelines().clear();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.mergeFrom(a);
assertNotNull(a.getEoscifguidelines());
assertEquals(1, a.getEoscifguidelines().size());
EoscIfGuidelines e = b.getEoscifguidelines().get(0);
assertEquals("a", e.getCode());
assertEquals("label a", e.getLabel());
assertEquals("https://aaa.aa", e.getUrl());
assertEquals("semRelA", e.getSemanticRelation());
a.getEoscifguidelines().clear();
b.getEoscifguidelines().clear();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("b", "label b", "https://bbb.bb", "semRelB")));
a.mergeFrom(b);
assertNotNull(a.getEoscifguidelines());
assertEquals(2, a.getEoscifguidelines().size());
}
private EoscIfGuidelines eoscifg(String code, String label, String url, String semrel) {
EoscIfGuidelines e = new EoscIfGuidelines();
e.setCode(code);
e.setLabel(label);
e.setUrl(url);
e.setSemanticRelation(semrel);
return e;
}
/**
* Merge relation test.
*/
@Test
void mergeRelationTest() {
Relation a = createRel(null, null);
Relation b = createRel(null, null);
a.mergeFrom(b);
assertEquals(a, b);
a = createRel(true, null);
b = createRel(null, null);
a.mergeFrom(b);
assertEquals(true, a.getValidated());
a = createRel(true, null);
b = createRel(false, null);
a.mergeFrom(b);
assertEquals(true, a.getValidated());
a = createRel(true, null);
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
a = createRel(true, "2016-05-07T12:41:19.202Z");
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
a = createRel(true, "2020-09-10 11:08:52");
b = createRel(true, "2021-09-10 11:08:52");
a.mergeFrom(b);
assertEquals("2020-09-10 11:08:52", a.getValidationDate());
a = createRel(true, "2021-03-16T10:32:42Z");
b = createRel(true, "2020-03-16T10:32:42Z");
a.mergeFrom(b);
assertEquals("2020-03-16T10:32:42Z", a.getValidationDate());
}
/**
* Merge relation test parse exception.
*/
@Test
void mergeRelationTestParseException() {
assertThrows(DateTimeParseException.class, () -> {
Relation a = createRel(true, "Once upon a time ...");
Relation b = createRel(true, "... in a far away land");
a.mergeFrom(b);
});
}
/**
* Create rel relation.
*
* @param validated the validated
* @param validationDate the validation date
* @return the relation
*/
private Relation createRel(Boolean validated, String validationDate) {
Relation rel = new Relation();
rel.setSource("1");
rel.setTarget("2");
rel.setRelType("reltype");
rel.setSubRelType("subreltype");
rel.setRelClass("relclass");
rel.setValidated(validated);
rel.setValidationDate(validationDate);
return rel;
}
/**
* Sets kv.
*
* @param key the key
* @param value the value
* @return the kv
*/
private KeyValue setKV(final String key, final String value) {
KeyValue k = new KeyValue();
k.setKey(key);
k.setValue(value);
return k;
}
private Subject setSub(final String value, final String schema, final String classname) {
Subject s = new Subject();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
/**
* Sets sp.
*
* @param value the value
* @param schema the schema
* @param classname the classname
* @return the sp
*/
private StructuredProperty setSP(
final String value, final String schema, final String classname) {
StructuredProperty s = new StructuredProperty();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
/**
* Field field.
*
* @param <T> the type parameter
* @param value the value
* @return the field
*/
private <T> Field<T> field(T value) {
Field<T> f = new Field();
f.setValue(value);
return f;
}
/**
* Publication publication.
*
* @return the publication
*/
private Publication publication() {
Publication p = new Publication();
p.setDataInfo(df("0.9"));
return p;
}
/**
* Publication publication.
*
* @param trust the trust
* @return the publication
*/
private Publication publication(String trust) {
Publication p = new Publication();
p.setDataInfo(df(trust));
return p;
}
/**
* Df data info.
*
* @param trust the trust
* @return the data info
*/
private DataInfo df(String trust) {
DataInfo d = new DataInfo();
d.setTrust(trust);
return d;
}
}

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package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Set;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
class BlackListProviderTest {
@Test
void blackListTest() {
Assertions.assertNotNull(PidBlacklistProvider.getBlacklist());
Assertions.assertNotNull(PidBlacklistProvider.getBlacklist().get("doi"));
Assertions.assertTrue(PidBlacklistProvider.getBlacklist().get("doi").size() > 0);
final Set<String> xxx = PidBlacklistProvider.getBlacklist("xxx");
Assertions.assertNotNull(xxx);
Assertions.assertEquals(0, xxx.size());
}
}

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package eu.dnetlib.dhp.schema.oaf.utils;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import java.io.IOException;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Publication;
class IdentifierFactoryTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
@Test
void testCreateIdentifierForPublication() throws IOException {
verifyIdentifier(
"publication_doi1.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
verifyIdentifier(
"publication_doi2.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
verifyIdentifier(
"publication_doi3.json", "50|pmc_________::94e4cb08c93f8733b48e2445d04002ac", true);
verifyIdentifier(
"publication_doi4.json", "50|od______2852::38861c44e6052a8d49f59a4c39ba5e66", true);
verifyIdentifier(
"publication_doi5.json", "50|doi_________::3bef95c0ca26dd55451fc8839ea69d27", true);
verifyIdentifier(
"publication_pmc1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", true);
verifyIdentifier(
"publication_pmc2.json", "50|pmc_________::94e4cb08c93f8733b48e2445d04002ac", true);
verifyIdentifier(
"publication_openapc.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
final String defaultID = "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f";
verifyIdentifier("publication_3.json", defaultID, true);
verifyIdentifier("publication_4.json", defaultID, true);
verifyIdentifier("publication_5.json", defaultID, true);
}
@Test
void testCreateIdentifierForPublicationNoHash() throws IOException {
verifyIdentifier("publication_doi1.json", "50|doi_________::10.1016/j.cmet.2010.03.013", false);
verifyIdentifier("publication_doi2.json", "50|doi_________::10.1016/j.cmet.2010.03.013", false);
verifyIdentifier("publication_pmc1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", false);
verifyIdentifier(
"publication_urn1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", false);
final String defaultID = "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f";
verifyIdentifier("publication_3.json", defaultID, false);
verifyIdentifier("publication_4.json", defaultID, false);
verifyIdentifier("publication_5.json", defaultID, false);
}
@Test
void testCreateIdentifierForROHub() throws IOException {
verifyIdentifier(
"orp-rohub.json", "50|w3id________::afc7592914ae190a50570db90f55f9c2", true);
}
protected void verifyIdentifier(String filename, String expectedID, boolean md5) throws IOException {
final String json = IOUtils.toString(getClass().getResourceAsStream(filename));
final Publication pub = OBJECT_MAPPER.readValue(json, Publication.class);
String id = IdentifierFactory.createIdentifier(pub, md5);
System.out.println(id);
assertNotNull(id);
assertEquals(expectedID, id);
}
}

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{"id":"50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1g", "resuttype" : { "classid" : "dataset" }, "pid":[{"qualifier":{"classid":"doi"},"value":"10.1016/j.cmet.2011.03.013"},{"qualifier":{"classid":"urn"},"value":"urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"},{"qualifier":{"classid":"scp-number"},"value":"79953761260"},{"qualifier":{"classid":"pmc"},"value":"21459329"}], "collectedfrom" : [ { "key" : "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", "value" : "Crossref"} ]}

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{"id":"50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1g", "resuttype" : { "classid" : "dataset" }, "pid":[{"qualifier":{"classid":"doi"},"value":"10.1016/j.cmet.2011.03.013"},{"qualifier":{"classid":"urn"},"value":"urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"},{"qualifier":{"classid":"scp-number"},"value":"79953761260"},{"qualifier":{"classid":"pmc"},"value":"21459329"}], "collectedfrom" : [ { "key" : "10|openaire____::081b82f96300b6a6e3d282bad31cb6e3", "value" : "Repository B"} ]}

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@ -0,0 +1,12 @@
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