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dhp-schemas
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merging from master branch

This commit is contained in:
Claudio Atzori 2021-04-23 13:01:19 +02:00
parent 3916f838a7
commit 8e32f2bb32
14 changed files with 211 additions and 247 deletions
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5
src/main/java/eu/dnetlib/dhp/schema/action/AtomicActionDeserializer.java
View File

@ -4,6 +4,7 @@ package eu.dnetlib.dhp.schema.action;
import java.io.IOException;
import com.fasterxml.jackson.core.JsonParser;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.DeserializationContext;
import com.fasterxml.jackson.databind.JsonDeserializer;
import com.fasterxml.jackson.databind.JsonNode;
@ -11,10 +12,10 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Oaf;
public class AtomicActionDeserializer extends JsonDeserializer<AtomicAction> {
public class AtomicActionDeserializer extends JsonDeserializer {
@Override
public AtomicAction deserialize(JsonParser jp, DeserializationContext ctxt)
public Object deserialize(JsonParser jp, DeserializationContext ctxt)
throws IOException {
JsonNode node = jp.getCodec().readTree(jp);
String classTag = node.get("clazz").asText();

69
src/main/java/eu/dnetlib/dhp/schema/common/LicenseComparator.java Normal file
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@ -0,0 +1,69 @@
package eu.dnetlib.dhp.schema.common;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
public class LicenseComparator implements Comparator<Qualifier> {
@Override
public int compare(Qualifier left, Qualifier right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
String lClass = left.getClassid();
String rClass = right.getClassid();
if (lClass.equals(rClass))
return 0;
if (lClass.equals("OPEN SOURCE"))
return -1;
if (rClass.equals("OPEN SOURCE"))
return 1;
if (lClass.equals("OPEN"))
return -1;
if (rClass.equals("OPEN"))
return 1;
if (lClass.equals("6MONTHS"))
return -1;
if (rClass.equals("6MONTHS"))
return 1;
if (lClass.equals("12MONTHS"))
return -1;
if (rClass.equals("12MONTHS"))
return 1;
if (lClass.equals("EMBARGO"))
return -1;
if (rClass.equals("EMBARGO"))
return 1;
if (lClass.equals("RESTRICTED"))
return -1;
if (rClass.equals("RESTRICTED"))
return 1;
if (lClass.equals("CLOSED"))
return -1;
if (rClass.equals("CLOSED"))
return 1;
if (lClass.equals("UNKNOWN"))
return -1;
if (rClass.equals("UNKNOWN"))
return 1;
// Else (but unlikely), lexicographical ordering will do.
return lClass.compareTo(rClass);
}
}

57
src/main/java/eu/dnetlib/dhp/schema/common/ModelConstants.java
View File

@ -1,7 +1,9 @@
package eu.dnetlib.dhp.schema.common;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.dhp.schema.oaf.DataInfo;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
public class ModelConstants {
@ -9,45 +11,21 @@ public class ModelConstants {
public static final String ORCID_PENDING = "orcid_pending";
public static final String ORCID_CLASSNAME = "Open Researcher and Contributor ID";
public static final String CROSSREF_ID = "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2";
public static final String DATACITE_ID = "10|openaire____::9e3be59865b2c1c335d32dae2fe7b254";
public static final String EUROPE_PUBMED_CENTRAL_ID = "10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c";
public static final String PUBMED_CENTRAL_ID = "10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357";
public static final String ARXIV_ID = "10|opendoar____::6f4922f45568161a8cdf4ad2299f6d23";
public static final String OPENORGS_NAME = "OpenOrgs Database";
// VOCABULARY VALUE
public static final String ACCESS_RIGHT_OPEN = "OPEN";
public static final String DNET_SUBJECT_TYPOLOGIES = "dnet:subject_classification_typologies";
public static final String DNET_RESULT_TYPOLOGIES = "dnet:result_typologies";
public static final String DNET_PUBLICATION_RESOURCE = "dnet:publication_resource";
public static final String DNET_ACCESS_MODES = "dnet:access_modes";
public static final String DNET_LANGUAGES = "dnet:languages";
public static final String DNET_PID_TYPES = "dnet:pid_types";
public static final String DNET_DATACITE_DATE = "dnet:dataCite_date";
public static final String DNET_DATACITE_TITLE = "dnet:dataCite_title";
public static final String DNET_DATA_CITE_DATE = "dnet:dataCite_date";
public static final String DNET_DATA_CITE_RESOURCE = "dnet:dataCite_resource";
public static final String DNET_PROVENANCE_ACTIONS = "dnet:provenanceActions";
public static final String DNET_COUNTRY_TYPE = "dnet:countries";
public static final String DNET_REVIEW_LEVELS = "dnet:review_levels";
public static final String DNET_PROGRAMMING_LANGUAGES = "dnet:programming_languages";
public static final String DNET_EXTERNAL_REF_TYPES = "dnet:externalReference_typologies";
public static final String SYSIMPORT_CROSSWALK_REPOSITORY = "sysimport:crosswalk:repository";
public static final String SYSIMPORT_CROSSWALK_ENTITYREGISTRY = "sysimport:crosswalk:entityregistry";
public static final String SYSIMPORT_ACTIONSET = "sysimport:actionset";
public static final String SYSIMPORT_ORCID_NO_DOI = "sysimport:actionset:orcidworks-no-doi";
public static final String USER_CLAIM = "user:claim";
public static final String HARVESTED = "Harvested";
public static final String PROVENANCE_DEDUP = "sysimport:dedup";
public static final Qualifier PROVENANCE_ACTION_SET_QUALIFIER = qualifier(
SYSIMPORT_ACTIONSET, SYSIMPORT_ACTIONSET, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS);
public static final String DATASET_RESULTTYPE_CLASSID = "dataset";
public static final String PUBLICATION_RESULTTYPE_CLASSID = "publication";
@ -66,12 +44,12 @@ public class ModelConstants {
public static final String IS_SUPPLEMENTED_BY = "isSupplementedBy";
public static final String PART = "part";
public static final String IS_PART_OF = "isPartOf";
public static final String HAS_PART = "hasPart";
public static final String HAS_PARTS = "hasParts";
public static final String RELATIONSHIP = "relationship";
public static final String CITATION = "citation";
public static final String CITES = "cites";
public static final String IS_CITED_BY = "isCitedBy";
public static final String REVIEW = "review"; // subreltype
public static final String REVIEW = "review";
public static final String REVIEWS = "reviews";
public static final String IS_REVIEWED_BY = "isReviewedBy";
@ -95,16 +73,7 @@ public class ModelConstants {
public static final String IS_AUTHOR_INSTITUTION_OF = "isAuthorInstitutionOf";
public static final String HAS_AUTHOR_INSTITUTION = "hasAuthorInstitution";
public static final String ORG_ORG_RELTYPE = "organizationOrganization";
public static final String DEDUP = "dedup";
public static final String MERGES = "merges";
public static final String IS_MERGED_IN = "isMergedIn";
public static final String SIMILARITY = "similarity";
public static final String IS_SIMILAR_TO = "isSimilarTo";
public static final String IS_DIFFERENT_FROM = "isDifferentFrom";
public static final String UNKNOWN = "UNKNOWN";
public static final String NOT_AVAILABLE = "not available";
@ -133,25 +102,11 @@ public class ModelConstants {
SYSIMPORT_CROSSWALK_ENTITYREGISTRY, SYSIMPORT_CROSSWALK_ENTITYREGISTRY,
DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS);
public static final String UNKNOWN_REPOSITORY_ORIGINALID = "openaire____::1256f046-bf1f-4afc-8b47-d0b147148b18";
public static final KeyValue UNKNOWN_REPOSITORY = keyValue(
"10|openaire____::55045bd2a65019fd8e6741a755395c8c", "Unknown Repository");
public static final Qualifier UNKNOWN_COUNTRY = qualifier(UNKNOWN, "Unknown", DNET_COUNTRY_TYPE, DNET_COUNTRY_TYPE);
public static final Qualifier MAIN_TITLE_QUALIFIER = qualifier(
"main title", "main title", DNET_DATACITE_TITLE, DNET_DATACITE_TITLE);
public static final AccessRight OPEN_ACCESS_RIGHT() {
final AccessRight result = new AccessRight();
result.setClassid(ACCESS_RIGHT_OPEN);
result.setClassid(ACCESS_RIGHT_OPEN);
result.setSchemeid(ModelConstants.DNET_ACCESS_MODES);
result.setSchemename(ModelConstants.DNET_ACCESS_MODES);
return result;
}
private static Qualifier qualifier(
final String classid,
final String classname,

209
src/main/java/eu/dnetlib/dhp/schema/common/ModelSupport.java
View File

@ -3,19 +3,17 @@ package eu.dnetlib.dhp.schema.common;
import static com.google.common.base.Preconditions.checkArgument;
import java.nio.charset.StandardCharsets;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.time.Instant;
import java.time.format.DateTimeFormatter;
import java.time.temporal.TemporalAccessor;
import java.util.Date;
import java.util.Map;
import java.util.Objects;
import java.util.Optional;
import java.util.function.Function;
import org.apache.commons.codec.binary.Hex;
import org.apache.commons.lang3.StringUtils;
import com.google.common.collect.Maps;
@ -41,7 +39,7 @@ public class ModelSupport {
/**
* Defines the mapping between the actual entity types and the relative classes implementing them
*/
public static final Map<EntityType, Class<? extends OafEntity>> entityTypes = Maps.newHashMap();
public static final Map<EntityType, Class> entityTypes = Maps.newHashMap();
static {
entityTypes.put(EntityType.datasource, Datasource.class);
@ -116,67 +114,67 @@ public class ModelSupport {
relationInverseMap
.put(
"projectOrganization_participation_isParticipant", new RelationInverse()
.setRelation(ModelConstants.IS_PARTICIPANT)
.setInverse(ModelConstants.HAS_PARTICIPANT)
.setRelType(ModelConstants.PROJECT_ORGANIZATION)
.setSubReltype(ModelConstants.PARTICIPATION));
.setRelation("isParticipant")
.setInverse("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
relationInverseMap
.put(
"projectOrganization_participation_hasParticipant", new RelationInverse()
.setInverse(ModelConstants.IS_PARTICIPANT)
.setRelation(ModelConstants.HAS_PARTICIPANT)
.setRelType(ModelConstants.PROJECT_ORGANIZATION)
.setSubReltype(ModelConstants.PARTICIPATION));
.setInverse("isParticipant")
.setRelation("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
relationInverseMap
.put(
"resultOrganization_affiliation_hasAuthorInstitution", new RelationInverse()
.setRelation(ModelConstants.HAS_AUTHOR_INSTITUTION)
.setInverse(ModelConstants.IS_AUTHOR_INSTITUTION_OF)
.setRelType(ModelConstants.RESULT_ORGANIZATION)
.setSubReltype(ModelConstants.AFFILIATION));
.setRelation("hasAuthorInstitution")
.setInverse("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
relationInverseMap
.put(
"resultOrganization_affiliation_isAuthorInstitutionOf", new RelationInverse()
.setInverse(ModelConstants.HAS_AUTHOR_INSTITUTION)
.setRelation(ModelConstants.IS_AUTHOR_INSTITUTION_OF)
.setRelType(ModelConstants.RESULT_ORGANIZATION)
.setSubReltype(ModelConstants.AFFILIATION));
.setInverse("hasAuthorInstitution")
.setRelation("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
relationInverseMap
.put(
"organizationOrganization_dedup_merges", new RelationInverse()
.setRelation(ModelConstants.MERGES)
.setInverse(ModelConstants.IS_MERGED_IN)
.setRelType(ModelConstants.ORG_ORG_RELTYPE)
.setSubReltype(ModelConstants.DEDUP));
.setRelation("merges")
.setInverse("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
relationInverseMap
.put(
"organizationOrganization_dedup_isMergedIn", new RelationInverse()
.setInverse(ModelConstants.MERGES)
.setRelation(ModelConstants.IS_MERGED_IN)
.setRelType(ModelConstants.ORG_ORG_RELTYPE)
.setSubReltype(ModelConstants.DEDUP));
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
relationInverseMap
.put(
"organizationOrganization_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse(ModelConstants.IS_SIMILAR_TO)
.setRelation(ModelConstants.IS_SIMILAR_TO)
.setRelType(ModelConstants.ORG_ORG_RELTYPE)
.setSubReltype(ModelConstants.DEDUP));
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("organizationOrganization")
.setSubReltype("dedupSimilarity"));
relationInverseMap
.put(
"resultProject_outcome_isProducedBy", new RelationInverse()
.setRelation(ModelConstants.IS_PRODUCED_BY)
.setInverse(ModelConstants.PRODUCES)
.setRelType(ModelConstants.RESULT_PROJECT)
.setSubReltype(ModelConstants.OUTCOME));
.setRelation("isProducedBy")
.setInverse("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
relationInverseMap
.put(
"resultProject_outcome_produces", new RelationInverse()
.setInverse(ModelConstants.IS_PRODUCED_BY)
.setRelation(ModelConstants.PRODUCES)
.setRelType(ModelConstants.RESULT_PROJECT)
.setSubReltype(ModelConstants.OUTCOME));
.setInverse("isProducedBy")
.setRelation("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
relationInverseMap
.put(
"projectPerson_contactPerson_isContact", new RelationInverse()
@ -201,108 +199,115 @@ public class ModelSupport {
relationInverseMap
.put(
"personPerson_dedup_merges", new RelationInverse()
.setInverse(ModelConstants.IS_MERGED_IN)
.setRelation(ModelConstants.MERGES)
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("personPerson")
.setSubReltype(ModelConstants.DEDUP));
.setSubReltype("dedup"));
relationInverseMap
.put(
"personPerson_dedup_isMergedIn", new RelationInverse()
.setInverse(ModelConstants.MERGES)
.setRelation(ModelConstants.IS_MERGED_IN)
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("personPerson")
.setSubReltype(ModelConstants.DEDUP));
.setSubReltype("dedup"));
relationInverseMap
.put(
"personPerson_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse(ModelConstants.IS_SIMILAR_TO)
.setRelation(ModelConstants.IS_SIMILAR_TO)
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("personPerson")
.setSubReltype(ModelConstants.DEDUP));
.setSubReltype("dedupSimilarity"));
relationInverseMap
.put(
"datasourceOrganization_provision_isProvidedBy", new RelationInverse()
.setInverse(ModelConstants.PROVIDES)
.setRelation(ModelConstants.IS_PROVIDED_BY)
.setRelType(ModelConstants.DATASOURCE_ORGANIZATION)
.setSubReltype(ModelConstants.PROVISION));
.setInverse("provides")
.setRelation("isProvidedBy")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
relationInverseMap
.put(
"datasourceOrganization_provision_provides", new RelationInverse()
.setInverse(ModelConstants.IS_PROVIDED_BY)
.setRelation(ModelConstants.PROVIDES)
.setRelType(ModelConstants.DATASOURCE_ORGANIZATION)
.setSubReltype(ModelConstants.PROVISION));
.setInverse("isProvidedBy")
.setRelation("provides")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
relationInverseMap
.put(
"resultResult_similarity_hasAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("isAmongTopNSimilarDocuments")
.setRelation("hasAmongTopNSimilarDocuments")
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.SIMILARITY));
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.SIMILARITY));
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_relationship_isRelatedTo", new RelationInverse()
.setInverse(ModelConstants.IS_RELATED_TO)
.setRelation(ModelConstants.IS_RELATED_TO)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.RELATIONSHIP));
.setInverse("isRelatedTo")
.setRelation("isRelatedTo")
.setRelType("resultResult")
.setSubReltype("relationship"));
relationInverseMap
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_supplement_isSupplementTo", new RelationInverse()
.setInverse(ModelConstants.IS_SUPPLEMENTED_BY)
.setRelation(ModelConstants.IS_SUPPLEMENT_TO)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.SUPPLEMENT));
.setInverse("isSupplementedBy")
.setRelation("isSupplementTo")
.setRelType("resultResult")
.setSubReltype("supplement"));
relationInverseMap
.put(
"resultResult_supplement_isSupplementedBy", new RelationInverse()
.setInverse(ModelConstants.IS_SUPPLEMENT_TO)
.setRelation(ModelConstants.IS_SUPPLEMENTED_BY)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.SUPPLEMENT));
.setInverse("isSupplementTo")
.setRelation("isSupplementedBy")
.setRelType("resultResult")
.setSubReltype("supplement"));
relationInverseMap
.put(
"resultResult_part_isPartOf", new RelationInverse()
.setInverse(ModelConstants.HAS_PART)
.setRelation(ModelConstants.IS_PART_OF)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.PART));
.setInverse("hasPart")
.setRelation("isPartOf")
.setRelType("resultResult")
.setSubReltype("part"));
relationInverseMap
.put(
"resultResult_part_hasPart", new RelationInverse()
.setInverse(ModelConstants.IS_PART_OF)
.setRelation(ModelConstants.HAS_PART)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.PART));
.setInverse("isPartOf")
.setRelation("hasPart")
.setRelType("resultResult")
.setSubReltype("part"));
relationInverseMap
.put(
"resultResult_dedup_merges", new RelationInverse()
.setInverse(ModelConstants.IS_MERGED_IN)
.setRelation(ModelConstants.MERGES)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.DEDUP));
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("resultResult")
.setSubReltype("dedup"));
relationInverseMap
.put(
"resultResult_dedup_isMergedIn", new RelationInverse()
.setInverse(ModelConstants.MERGES)
.setRelation(ModelConstants.IS_MERGED_IN)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.DEDUP));
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("resultResult")
.setSubReltype("dedup"));
relationInverseMap
.put(
"resultResult_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse(ModelConstants.IS_SIMILAR_TO)
.setRelation(ModelConstants.IS_SIMILAR_TO)
.setRelType(ModelConstants.RESULT_RESULT)
.setSubReltype(ModelConstants.DEDUP));
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("resultResult")
.setSubReltype("dedupSimilarity"));
}
@ -376,8 +381,6 @@ public class ModelSupport {
Field.class,
GeoLocation.class,
Instance.class,
AccessRight.class,
OpenAccessRoute.class,
Journal.class,
KeyValue.class,
Oaf.class,
@ -477,20 +480,6 @@ public class ModelSupport {
return ((OafEntity) t).getId();
}
public static String md5(final String s) {
try {
final MessageDigest md = MessageDigest.getInstance("MD5");
md.update(s.getBytes(StandardCharsets.UTF_8));
return new String(Hex.encodeHex(md.digest()));
} catch (final NoSuchAlgorithmException e) {
throw new IllegalStateException(e);
}
}
public static String generateIdentifier(final String originalId, final String nsPrefix) {
return String.format("%s::%s", nsPrefix, md5(originalId));
}
public static String oldest(String dateA, String dateB) throws ParseException {
if (StringUtils.isBlank(dateA)) {

1
src/main/java/eu/dnetlib/dhp/schema/oaf/Author.java
View File

@ -12,7 +12,6 @@ public class Author implements Serializable {
private String surname;
// START WITH 1
private Integer rank;
private List<StructuredProperty> pid;

27
src/main/java/eu/dnetlib/dhp/schema/oaf/ExternalReference.java
View File

@ -2,7 +2,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class ExternalReference implements Serializable {
@ -12,12 +11,12 @@ public class ExternalReference implements Serializable {
// title
private String label;
// alternative labels
private List<String> alternateLabel;
// text()
private String url;
// ?? not mapped yet ??
private String description;
// type
private Qualifier qualifier;
@ -46,14 +45,6 @@ public class ExternalReference implements Serializable {
this.label = label;
}
public List<String> getAlternateLabel() {
return alternateLabel;
}
public void setAlternateLabel(List<String> alternateLabel) {
this.alternateLabel = alternateLabel;
}
public String getUrl() {
return url;
}
@ -62,6 +53,14 @@ public class ExternalReference implements Serializable {
this.url = url;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public Qualifier getQualifier() {
return qualifier;
}
@ -104,6 +103,7 @@ public class ExternalReference implements Serializable {
return Objects.equals(sitename, that.sitename)
&& Objects.equals(label, that.label)
&& Objects.equals(url, that.url)
&& Objects.equals(description, that.description)
&& Objects.equals(qualifier, that.qualifier)
&& Objects.equals(refidentifier, that.refidentifier)
&& Objects.equals(query, that.query)
@ -114,7 +114,6 @@ public class ExternalReference implements Serializable {
public int hashCode() {
return Objects
.hash(
sitename, label, url, qualifier, refidentifier, query, dataInfo);
sitename, label, url, description, qualifier, refidentifier, query, dataInfo);
}
}

27
src/main/java/eu/dnetlib/dhp/schema/oaf/Instance.java
View File

@ -8,7 +8,7 @@ public class Instance implements Serializable {
private Field<String> license;
private AccessRight accessright;
private Qualifier accessright;
private Qualifier instancetype;
@ -21,10 +21,6 @@ public class Instance implements Serializable {
private KeyValue collectedfrom;
private List<StructuredProperty> pid;
private List<StructuredProperty> alternateIdentifier;
private Field<String> dateofacceptance;
// ( article | book ) processing charges. Defined here to cope with possible wrongly typed
@ -45,11 +41,11 @@ public class Instance implements Serializable {
this.license = license;
}
public AccessRight getAccessright() {
public Qualifier getAccessright() {
return accessright;
}
public void setAccessright(AccessRight accessright) {
public void setAccessright(Qualifier accessright) {
this.accessright = accessright;
}
@ -93,14 +89,6 @@ public class Instance implements Serializable {
this.collectedfrom = collectedfrom;
}
public List<StructuredProperty> getPid() {
return pid;
}
public void setPid(List<StructuredProperty> pid) {
this.pid = pid;
}
public Field<String> getDateofacceptance() {
return dateofacceptance;
}
@ -109,14 +97,6 @@ public class Instance implements Serializable {
this.dateofacceptance = dateofacceptance;
}
public List<StructuredProperty> getAlternateIdentifier() {
return alternateIdentifier;
}
public void setAlternateIdentifier(List<StructuredProperty> alternateIdentifier) {
this.alternateIdentifier = alternateIdentifier;
}
public Field<String> getProcessingchargeamount() {
return processingchargeamount;
}
@ -169,5 +149,4 @@ public class Instance implements Serializable {
return toComparableString().equals(other.toComparableString());
}
}

9
src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java
View File

@ -1,6 +1,8 @@
package eu.dnetlib.dhp.schema.oaf;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import static com.google.common.base.Preconditions.checkArgument;
import java.text.ParseException;
@ -8,8 +10,6 @@ import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import eu.dnetlib.dhp.schema.common.ModelSupport;
/**
* Relation models any edge between two nodes in the OpenAIRE graph. It has a source id and a target id pointing to
* graph node identifiers and it is further characterised by the semantic of the link through the fields relType,
@ -137,10 +137,7 @@ public class Relation extends Oaf {
try {
setValidationDate(ModelSupport.oldest(getValidationDate(), r.getValidationDate()));
} catch (ParseException e) {
throw new IllegalArgumentException(String
.format(
"invalid validation date format in relation [s:%s, t:%s]: %s", getSource(), getTarget(),
getValidationDate()));
throw new IllegalArgumentException(String.format("invalid validation date format in relation [s:%s, t:%s]: %s", getSource(), getTarget(), getValidationDate()));
}
super.mergeFrom(r);

5
src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java
View File

@ -2,11 +2,12 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.AccessRightComparator;
import eu.dnetlib.dhp.schema.common.LicenseComparator;
public class Result extends OafEntity implements Serializable {
@ -247,7 +248,7 @@ public class Result extends OafEntity implements Serializable {
instance = mergeLists(instance, r.getInstance());
if (r.getBestaccessright() != null
&& new AccessRightComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
&& new LicenseComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)

14
src/main/java/eu/dnetlib/dhp/schema/oaf/StructuredProperty.java
View File

@ -2,13 +2,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.StringUtils;
import com.google.common.base.Joiner;
public class StructuredProperty implements Serializable {
@ -43,12 +36,7 @@ public class StructuredProperty implements Serializable {
}
public String toComparableString() {
return Stream
.of(
getQualifier().toComparableString(),
Optional.ofNullable(getValue()).map(String::toLowerCase).orElse(""))
.filter(StringUtils::isNotBlank)
.collect(Collectors.joining("||"));
return value != null ? value.toLowerCase() : "";
}
@Override

18
src/main/java/eu/dnetlib/dhp/schema/scholexplorer/OafUtils.scala
View File

@ -1,7 +1,6 @@
package eu.dnetlib.dhp.schema.scholexplorer
import eu.dnetlib.dhp.schema.common.ModelConstants
import eu.dnetlib.dhp.schema.oaf.{AccessRight, DataInfo, Field, KeyValue, Qualifier, StructuredProperty}
import eu.dnetlib.dhp.schema.oaf.{DataInfo, Field, KeyValue, Qualifier, StructuredProperty}
object OafUtils {
@ -16,13 +15,13 @@ object OafUtils {
}
def generateDataInfo(trust: String = "0.9", invisible: Boolean = false): DataInfo = {
def generateDataInfo(trust: String = "0.9", invisibile: Boolean = false): DataInfo = {
val di = new DataInfo
di.setDeletedbyinference(false)
di.setInferred(false)
di.setInvisible(invisible)
di.setInvisible(false)
di.setTrust(trust)
di.setProvenanceaction(createQualifier(ModelConstants.SYSIMPORT_ACTIONSET, ModelConstants.DNET_PROVENANCE_ACTIONS))
di.setProvenanceaction(createQualifier("sysimport:actionset", "dnet:provenanceActions"))
di
}
@ -40,15 +39,6 @@ object OafUtils {
q
}
def createAccessRight(classId: String, className: String, schemeId: String, schemeName: String): AccessRight = {
val accessRight: AccessRight = new AccessRight
accessRight.setClassid(classId)
accessRight.setClassname(className)
accessRight.setSchemeid(schemeId)
accessRight.setSchemename(schemeName)
accessRight
}
def asField[T](value: T): Field[T] = {
val tmp = new Field[T]

7
src/test/java/eu/dnetlib/dhp/schema/action/AtomicActionTest.java
View File

@ -10,7 +10,6 @@ import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Relation;
/** @author claudio.atzori */
@ -22,9 +21,9 @@ public class AtomicActionTest {
Relation rel = new Relation();
rel.setSource("1");
rel.setTarget("2");
rel.setRelType(ModelConstants.RESULT_RESULT);
rel.setSubRelType(ModelConstants.DEDUP);
rel.setRelClass(ModelConstants.MERGES);
rel.setRelType("resultResult");
rel.setSubRelType("dedup");
rel.setRelClass("merges");
AtomicAction aa1 = new AtomicAction(Relation.class, rel);

3
src/test/java/eu/dnetlib/dhp/schema/oaf/MergeTest.java
View File

@ -3,7 +3,6 @@ package eu.dnetlib.dhp.schema.oaf;
import static org.junit.jupiter.api.Assertions.*;
import java.time.format.DateTimeParseException;
import java.util.Arrays;
import java.util.List;
@ -95,7 +94,7 @@ public class MergeTest {
@Test
public void mergeRelationTestParseException() {
assertThrows(DateTimeParseException.class, () -> {
assertThrows(IllegalArgumentException.class, () -> {
Relation a = createRel(true, "2016-04-05");
Relation b = createRel(true, "2016-04-05");
a.mergeFrom(b);

7
src/test/java/eu/dnetlib/dhp/schema/scholexplorer/DLItest.java
View File

@ -12,7 +12,6 @@ import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.databind.SerializationFeature;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
@ -21,7 +20,7 @@ public class DLItest {
@Test
public void testMergePublication() throws JsonProcessingException {
DLIPublication a1 = new DLIPublication();
a1.setPid(Arrays.asList(createSP("123456", "pdb", ModelConstants.DNET_PID_TYPES)));
a1.setPid(Arrays.asList(createSP("123456", "pdb", "dnet:pid_types")));
a1.setTitle(Collections.singletonList(createSP("Un Titolo", "title", "dnetTitle")));
a1.setDlicollectedfrom(Arrays.asList(createCollectedFrom("znd", "Zenodo", "complete")));
a1.setCompletionStatus("complete");
@ -31,8 +30,8 @@ public class DLItest {
.setPid(
Arrays
.asList(
createSP("10.11", "doi", ModelConstants.DNET_PID_TYPES),
createSP("123456", "pdb", ModelConstants.DNET_PID_TYPES)));
createSP("10.11", "doi", "dnet:pid_types"),
createSP("123456", "pdb", "dnet:pid_types")));
a.setTitle(Collections.singletonList(createSP("A Title", "title", "dnetTitle")));
a
.setDlicollectedfrom(