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removed equals and hashcode methods from the Oaf model, utility classes moved in dhp-common

This commit is contained in:
Claudio Atzori 2024-03-22 16:10:20 +01:00
parent 46eec69aed
commit 7480ec0ab3
68 changed files with 30 additions and 3038 deletions
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2
pom.xml
View File

@ -5,7 +5,7 @@
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-schemas</artifactId>
<packaging>jar</packaging>
<version>6.0.1-SNAPSHOT</version>
<version>6.1.0-SNAPSHOT</version>
<licenses>
<license>

29
src/main/java/eu/dnetlib/dhp/schema/oaf/AccessRight.java
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@ -1,6 +1,7 @@
package eu.dnetlib.dhp.schema.oaf;
import java.util.Objects;
import java.util.Optional;
/**
@ -19,32 +20,4 @@ public class AccessRight extends Qualifier {
this.openAccessRoute = openAccessRoute;
}
@Override
public String toComparableString() {
String s = super.toComparableString();
return Optional
.ofNullable(getOpenAccessRoute())
.map(x -> s + "::" + x)
.orElse(s);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Qualifier other = (Qualifier) obj;
return toComparableString().equals(other.toComparableString());
}
}

20
src/main/java/eu/dnetlib/dhp/schema/oaf/Author.java
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@ -68,24 +68,4 @@ public class Author implements Serializable {
this.affiliation = affiliation;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Author author = (Author) o;
return Objects.equals(fullname, author.fullname)
&& Objects.equals(name, author.name)
&& Objects.equals(surname, author.surname)
&& Objects.equals(rank, author.rank)
&& Objects.equals(pid, author.pid)
&& Objects.equals(affiliation, author.affiliation);
}
@Override
public int hashCode() {
return Objects.hash(fullname, name, surname, rank, pid, affiliation);
}
}

19
src/main/java/eu/dnetlib/dhp/schema/oaf/Context.java
View File

@ -3,6 +3,7 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
public class Context implements Serializable {
@ -27,22 +28,4 @@ public class Context implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public int hashCode() {
return id == null ? 0 : id.hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Context other = (Context) obj;
return id.equals(other.getId());
}
}

18
src/main/java/eu/dnetlib/dhp/schema/oaf/Country.java
View File

@ -1,8 +1,6 @@
package eu.dnetlib.dhp.schema.oaf;
import java.util.Objects;
public class Country extends Qualifier {
private static final long serialVersionUID = 1587334433446567175L;
@ -16,20 +14,4 @@ public class Country extends Qualifier {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
return false;
Country country = (Country) o;
return Objects.equals(dataInfo, country.dataInfo);
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), dataInfo);
}
}

21
src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java
View File

@ -63,25 +63,4 @@ public class DataInfo implements Serializable {
this.provenanceaction = provenanceaction;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
DataInfo dataInfo = (DataInfo) o;
return Objects.equals(invisible, dataInfo.invisible)
&& Objects.equals(inferred, dataInfo.inferred)
&& Objects.equals(deletedbyinference, dataInfo.deletedbyinference)
&& Objects.equals(trust, dataInfo.trust)
&& Objects.equals(inferenceprovenance, dataInfo.inferenceprovenance)
&& Objects.equals(provenanceaction, dataInfo.provenanceaction);
}
@Override
public int hashCode() {
return Objects
.hash(
invisible, inferred, deletedbyinference, trust, inferenceprovenance, provenanceaction);
}
}

30
src/main/java/eu/dnetlib/dhp/schema/oaf/Dataset.java
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@ -84,34 +84,4 @@ public class Dataset extends Result implements Serializable {
this.geolocation = geolocation;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Dataset.class.isAssignableFrom(e.getClass())) {
return;
}
final Dataset d = (Dataset) e;
storagedate = d.getStoragedate() != null && compareTrust(this, e) < 0 ? d.getStoragedate() : storagedate;
device = d.getDevice() != null && compareTrust(this, e) < 0 ? d.getDevice() : device;
size = d.getSize() != null && compareTrust(this, e) < 0 ? d.getSize() : size;
version = d.getVersion() != null && compareTrust(this, e) < 0 ? d.getVersion() : version;
lastmetadataupdate = d.getLastmetadataupdate() != null && compareTrust(this, e) < 0
? d.getLastmetadataupdate()
: lastmetadataupdate;
metadataversionnumber = d.getMetadataversionnumber() != null && compareTrust(this, e) < 0
? d.getMetadataversionnumber()
: metadataversionnumber;
geolocation = mergeLists(geolocation, d.getGeolocation());
mergeOAFDataInfo(d);
}
}

5
src/main/java/eu/dnetlib/dhp/schema/oaf/Datasource.java
View File

@ -563,9 +563,4 @@ public class Datasource extends OafEntity implements Serializable {
this.eoscifguidelines = eoscifguidelines;
}
@Override
public void mergeFrom(final OafEntity e) {
super.mergeFrom(e);
}
}

30
src/main/java/eu/dnetlib/dhp/schema/oaf/EoscIfGuidelines.java
View File

@ -1,6 +1,7 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -66,33 +67,4 @@ public class EoscIfGuidelines implements Serializable {
this.semanticRelation = semanticRelation;
}
private String toComparableString() {
return Stream
.of(
Optional.ofNullable(getCode()).orElse(""),
Optional.ofNullable(getLabel()).orElse(""),
Optional.ofNullable(getUrl()).orElse(""),
Optional.ofNullable(getSemanticRelation()).orElse(""))
.filter(StringUtils::isNotBlank)
.collect(Collectors.joining("||"));
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
EoscIfGuidelines other = (EoscIfGuidelines) obj;
return toComparableString().equals(other.toComparableString());
}
}

23
src/main/java/eu/dnetlib/dhp/schema/oaf/ExternalReference.java
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@ -96,27 +96,4 @@ public class ExternalReference implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExternalReference that = (ExternalReference) o;
return Objects.equals(sitename, that.sitename)
&& Objects.equals(label, that.label)
&& Objects.equals(url, that.url)
&& Objects.equals(qualifier, that.qualifier)
&& Objects.equals(refidentifier, that.refidentifier)
&& Objects.equals(query, that.query)
&& Objects.equals(dataInfo, that.dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
sitename, label, url, qualifier, refidentifier, query, dataInfo);
}
}

18
src/main/java/eu/dnetlib/dhp/schema/oaf/ExtraInfo.java
View File

@ -58,22 +58,4 @@ public class ExtraInfo implements Serializable {
this.value = value;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
ExtraInfo extraInfo = (ExtraInfo) o;
return Objects.equals(name, extraInfo.name)
&& Objects.equals(typology, extraInfo.typology)
&& Objects.equals(provenance, extraInfo.provenance)
&& Objects.equals(trust, extraInfo.trust)
&& Objects.equals(value, extraInfo.value);
}
@Override
public int hashCode() {
return Objects.hash(name, typology, provenance, trust, value);
}
}

35
src/main/java/eu/dnetlib/dhp/schema/oaf/GeoLocation.java
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@ -2,6 +2,7 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import org.apache.commons.lang3.StringUtils;
@ -40,38 +41,4 @@ public class GeoLocation implements Serializable {
this.place = place;
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(point) && StringUtils.isBlank(box) && StringUtils.isBlank(place);
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s%s",
point != null ? point.toLowerCase() : "",
box != null ? box.toLowerCase() : "",
place != null ? place.toLowerCase() : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
GeoLocation other = (GeoLocation) obj;
return toComparableString().equals(other.toComparableString());
}
}

15
src/main/java/eu/dnetlib/dhp/schema/oaf/H2020Classification.java
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@ -71,19 +71,4 @@ public class H2020Classification implements Serializable {
this.classification = classification;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
H2020Classification h2020classification = (H2020Classification) o;
return Objects.equals(level1, h2020classification.level1) &&
Objects.equals(level2, h2020classification.level2) &&
Objects.equals(level3, h2020classification.level3) &&
Objects.equals(classification, h2020classification.classification) &&
h2020Programme.equals(h2020classification.h2020Programme);
}
}

11
src/main/java/eu/dnetlib/dhp/schema/oaf/H2020Programme.java
View File

@ -31,15 +31,4 @@ public class H2020Programme implements Serializable {
this.description = description;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
H2020Programme h2020Programme = (H2020Programme) o;
return Objects.equals(code, h2020Programme.code);
}
}

32
src/main/java/eu/dnetlib/dhp/schema/oaf/Instance.java
View File

@ -3,6 +3,9 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.List;
import java.util.Optional;
import com.google.common.base.Joiner;
public class Instance implements Serializable {
@ -175,33 +178,4 @@ public class Instance implements Serializable {
this.fulltext = fulltext;
}
public String toComparableString() {
return String
.format(
"%s::%s::%s::%s",
hostedby != null && hostedby.getKey() != null ? hostedby.getKey().toLowerCase() : "",
accessright != null && accessright.getClassid() != null ? accessright.getClassid() : "",
instancetype != null && instancetype.getClassid() != null ? instancetype.getClassid() : "",
url != null ? url : "");
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Instance other = (Instance) obj;
return toComparableString().equals(other.toComparableString());
}
}

38
src/main/java/eu/dnetlib/dhp/schema/oaf/Journal.java
View File

@ -128,42 +128,4 @@ public class Journal implements Serializable {
this.dataInfo = dataInfo;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Journal journal = (Journal) o;
return Objects.equals(name, journal.name)
&& Objects.equals(issnPrinted, journal.issnPrinted)
&& Objects.equals(issnOnline, journal.issnOnline)
&& Objects.equals(issnLinking, journal.issnLinking)
&& Objects.equals(ep, journal.ep)
&& Objects.equals(iss, journal.iss)
&& Objects.equals(sp, journal.sp)
&& Objects.equals(vol, journal.vol)
&& Objects.equals(edition, journal.edition)
&& Objects.equals(conferenceplace, journal.conferenceplace)
&& Objects.equals(conferencedate, journal.conferencedate)
&& Objects.equals(dataInfo, journal.dataInfo);
}
@Override
public int hashCode() {
return Objects
.hash(
name,
issnPrinted,
issnOnline,
issnLinking,
ep,
iss,
sp,
vol,
edition,
conferenceplace,
conferencedate,
dataInfo);
}
}

35
src/main/java/eu/dnetlib/dhp/schema/oaf/KeyValue.java
View File

@ -2,10 +2,13 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.google.common.base.Joiner;
public class KeyValue implements Serializable {
@ -40,36 +43,4 @@ public class KeyValue implements Serializable {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s",
key != null ? key.toLowerCase() : "", value != null ? value.toLowerCase() : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(key) && StringUtils.isBlank(value);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
KeyValue other = (KeyValue) obj;
return toComparableString().equals(other.toComparableString());
}
}

19
src/main/java/eu/dnetlib/dhp/schema/oaf/Measure.java
View File

@ -39,23 +39,4 @@ public class Measure implements Serializable {
this.unit = unit;
}
public void mergeFrom(Measure m) {
// TODO
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Measure measure = (Measure) o;
return Objects.equal(id, measure.id) &&
Objects.equal(unit, measure.unit);
}
@Override
public int hashCode() {
return Objects.hashCode(id, unit);
}
}

14
src/main/java/eu/dnetlib/dhp/schema/oaf/OAIProvenance.java
View File

@ -18,18 +18,4 @@ public class OAIProvenance implements Serializable {
this.originDescription = originDescription;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OAIProvenance that = (OAIProvenance) o;
return Objects.equals(originDescription, that.originDescription);
}
@Override
public int hashCode() {
return Objects.hash(originDescription);
}
}

61
src/main/java/eu/dnetlib/dhp/schema/oaf/Oaf.java
View File

@ -45,65 +45,4 @@ public abstract class Oaf implements Serializable {
this.lastupdatetimestamp = lastupdatetimestamp;
}
public void mergeFrom(Oaf o) {
if (Objects.isNull(o)) {
return;
}
setCollectedfrom(
Stream
.concat(
Optional
.ofNullable(getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()),
Optional
.ofNullable(o.getCollectedfrom())
.map(Collection::stream)
.orElse(Stream.empty()))
.distinct() // relies on KeyValue.equals
.collect(Collectors.toList()));
setLastupdatetimestamp(
Math
.max(
Optional.ofNullable(getLastupdatetimestamp()).orElse(0L),
Optional.ofNullable(o.getLastupdatetimestamp()).orElse(0L)));
}
public void mergeOAFDataInfo(Oaf o) {
Optional.ofNullable(o)
.ifPresent(other -> Optional.ofNullable(other.getDataInfo())
.ifPresent(otherDataInfo -> Optional.ofNullable(this.getDataInfo())
.ifPresent(thisDataInfo -> {
if (compareTrust(this, other) < 0 || thisDataInfo.getInvisible()) {
setDataInfo(otherDataInfo);
}
})));
}
protected String extractTrust(Oaf e) {
if (e == null || e.getDataInfo() == null || e.getDataInfo().getTrust() == null)
return "0.0";
return e.getDataInfo().getTrust();
}
protected int compareTrust(Oaf a, Oaf b) {
return extractTrust(a).compareTo(extractTrust(b));
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
Oaf oaf = (Oaf) o;
return Objects.equals(getDataInfo(), oaf.getDataInfo())
&& Objects.equals(lastupdatetimestamp, oaf.lastupdatetimestamp);
}
@Override
public int hashCode() {
return Objects.hash(dataInfo, lastupdatetimestamp);
}
}

46
src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java
View File

@ -125,55 +125,19 @@ public abstract class OafEntity extends Oaf implements Serializable {
this.oaiprovenance = oaiprovenance;
}
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
originalId = mergeLists(originalId, e.getOriginalId());
pid = mergeLists(pid, e.getPid());
if (e.getDateofcollection() != null && compareTrust(this, e) < 0)
dateofcollection = e.getDateofcollection();
if (e.getDateoftransformation() != null && compareTrust(this, e) < 0)
dateoftransformation = e.getDateoftransformation();
extraInfo = mergeLists(extraInfo, e.getExtraInfo());
if (e.getOaiprovenance() != null && compareTrust(this, e) < 0)
oaiprovenance = e.getOaiprovenance();
measures = mergeLists(measures, e.getMeasures());
context = mergeLists(context, e.getContext());
}
@SafeVarargs
protected final <T> List<T> mergeLists(final List<T>... lists) {
return Arrays
.stream(lists)
.filter(Objects::nonNull)
.flatMap(List::stream)
.filter(Objects::nonNull)
.distinct()
.collect(Collectors.toList());
@Override
public int hashCode() {
return Objects.hash(getId());
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
if (!super.equals(o))
if (!(o instanceof OafEntity))
return false;
OafEntity oafEntity = (OafEntity) o;
return Objects.equals(id, oafEntity.id);
return Objects.equals(getId(), oafEntity.getId());
}
@Override
public int hashCode() {
return Objects.hash(super.hashCode(), id);
}
}

44
src/main/java/eu/dnetlib/dhp/schema/oaf/Organization.java
View File

@ -169,48 +169,4 @@ public class Organization extends OafEntity implements Serializable {
this.country = country;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Organization.class.isAssignableFrom(e.getClass())) {
return;
}
final Organization o = (Organization) e;
legalshortname = o.getLegalshortname() != null && compareTrust(this, e) < 0
? o.getLegalshortname()
: legalshortname;
legalname = o.getLegalname() != null && compareTrust(this, e) < 0 ? o.getLegalname() : legalname;
alternativeNames = mergeLists(o.getAlternativeNames(), alternativeNames);
websiteurl = o.getWebsiteurl() != null && compareTrust(this, e) < 0 ? o.getWebsiteurl() : websiteurl;
logourl = o.getLogourl() != null && compareTrust(this, e) < 0 ? o.getLogourl() : logourl;
eclegalbody = o.getEclegalbody() != null && compareTrust(this, e) < 0 ? o.getEclegalbody() : eclegalbody;
eclegalperson = o.getEclegalperson() != null && compareTrust(this, e) < 0
? o.getEclegalperson()
: eclegalperson;
ecnonprofit = o.getEcnonprofit() != null && compareTrust(this, e) < 0 ? o.getEcnonprofit() : ecnonprofit;
ecresearchorganization = o.getEcresearchorganization() != null && compareTrust(this, e) < 0
? o.getEcresearchorganization()
: ecresearchorganization;
echighereducation = o.getEchighereducation() != null && compareTrust(this, e) < 0
? o.getEchighereducation()
: echighereducation;
ecinternationalorganizationeurinterests = o.getEcinternationalorganizationeurinterests() != null
&& compareTrust(this, e) < 0
? o.getEcinternationalorganizationeurinterests()
: ecinternationalorganizationeurinterests;
ecinternationalorganization = o.getEcinternationalorganization() != null && compareTrust(this, e) < 0
? o.getEcinternationalorganization()
: ecinternationalorganization;
ecenterprise = o.getEcenterprise() != null && compareTrust(this, e) < 0
? o.getEcenterprise()
: ecenterprise;
ecsmevalidated = o.getEcsmevalidated() != null && compareTrust(this, e) < 0
? o.getEcsmevalidated()
: ecsmevalidated;
ecnutscode = o.getEcnutscode() != null && compareTrust(this, e) < 0 ? o.getEcnutscode() : ecnutscode;
country = o.getCountry() != null && compareTrust(this, e) < 0 ? o.getCountry() : country;
mergeOAFDataInfo(o);
}
}

19
src/main/java/eu/dnetlib/dhp/schema/oaf/OriginDescription.java
View File

@ -68,23 +68,4 @@ public class OriginDescription implements Serializable {
this.metadataNamespace = metadataNamespace;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
OriginDescription that = (OriginDescription) o;
return Objects.equals(harvestDate, that.harvestDate)
&& Objects.equals(altered, that.altered)
&& Objects.equals(baseURL, that.baseURL)
&& Objects.equals(identifier, that.identifier)
&& Objects.equals(datestamp, that.datestamp)
&& Objects.equals(metadataNamespace, that.metadataNamespace);
}
@Override
public int hashCode() {
return Objects.hash(harvestDate, altered, baseURL, identifier, datestamp, metadataNamespace);
}
}

15
src/main/java/eu/dnetlib/dhp/schema/oaf/OtherResearchProduct.java
View File

@ -44,19 +44,4 @@ public class OtherResearchProduct extends Result implements Serializable {
this.tool = tool;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!OtherResearchProduct.class.isAssignableFrom(e.getClass())) {
return;
}
OtherResearchProduct o = (OtherResearchProduct) e;
contactperson = mergeLists(contactperson, o.getContactperson());
contactgroup = mergeLists(contactgroup, o.getContactgroup());
tool = mergeLists(tool, o.getTool());
mergeOAFDataInfo(e);
}
}

60
src/main/java/eu/dnetlib/dhp/schema/oaf/Project.java
View File

@ -300,64 +300,4 @@ public class Project extends OafEntity implements Serializable {
this.fundedamount = fundedamount;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Project.class.isAssignableFrom(e.getClass())) {
return;
}
Project p = (Project) e;
websiteurl = p.getWebsiteurl() != null && compareTrust(this, e) < 0 ? p.getWebsiteurl() : websiteurl;
code = p.getCode() != null && compareTrust(this, e) < 0 ? p.getCode() : code;
acronym = p.getAcronym() != null && compareTrust(this, e) < 0 ? p.getAcronym() : acronym;
title = p.getTitle() != null && compareTrust(this, e) < 0 ? p.getTitle() : title;
startdate = p.getStartdate() != null && compareTrust(this, e) < 0 ? p.getStartdate() : startdate;
enddate = p.getEnddate() != null && compareTrust(this, e) < 0 ? p.getEnddate() : enddate;
callidentifier = p.getCallidentifier() != null && compareTrust(this, e) < 0
? p.getCallidentifier()
: callidentifier;
keywords = p.getKeywords() != null && compareTrust(this, e) < 0 ? p.getKeywords() : keywords;
duration = p.getDuration() != null && compareTrust(this, e) < 0 ? p.getDuration() : duration;
ecsc39 = p.getEcsc39() != null && compareTrust(this, e) < 0 ? p.getEcsc39() : ecsc39;
oamandatepublications = p.getOamandatepublications() != null && compareTrust(this, e) < 0
? p.getOamandatepublications()
: oamandatepublications;
ecarticle29_3 = p.getEcarticle29_3() != null && compareTrust(this, e) < 0
? p.getEcarticle29_3()
: ecarticle29_3;
subjects = mergeLists(subjects, p.getSubjects());
fundingtree = mergeLists(fundingtree, p.getFundingtree());
contracttype = p.getContracttype() != null && compareTrust(this, e) < 0
? p.getContracttype()
: contracttype;
optional1 = p.getOptional1() != null && compareTrust(this, e) < 0 ? p.getOptional1() : optional1;
optional2 = p.getOptional2() != null && compareTrust(this, e) < 0 ? p.getOptional2() : optional2;
jsonextrainfo = p.getJsonextrainfo() != null && compareTrust(this, e) < 0
? p.getJsonextrainfo()
: jsonextrainfo;
contactfullname = p.getContactfullname() != null && compareTrust(this, e) < 0
? p.getContactfullname()
: contactfullname;
contactfax = p.getContactfax() != null && compareTrust(this, e) < 0 ? p.getContactfax() : contactfax;
contactphone = p.getContactphone() != null && compareTrust(this, e) < 0
? p.getContactphone()
: contactphone;
contactemail = p.getContactemail() != null && compareTrust(this, e) < 0
? p.getContactemail()
: contactemail;
summary = p.getSummary() != null && compareTrust(this, e) < 0 ? p.getSummary() : summary;
currency = p.getCurrency() != null && compareTrust(this, e) < 0 ? p.getCurrency() : currency;
if (p.getH2020topiccode() != null && StringUtils.isEmpty(h2020topiccode)){
h2020topiccode = p.getH2020topiccode();
h2020topicdescription = p.getH2020topicdescription();
}
h2020classification = mergeLists(h2020classification, p.getH2020classification());
mergeOAFDataInfo(e);
}
}

14
src/main/java/eu/dnetlib/dhp/schema/oaf/Publication.java
View File

@ -24,18 +24,4 @@ public class Publication extends Result implements Serializable {
this.journal = journal;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Publication.class.isAssignableFrom(e.getClass())) {
return;
}
Publication p = (Publication) e;
if (p.getJournal() != null && compareTrust(this, e) < 0)
journal = p.getJournal();
mergeOAFDataInfo(e);
}
}

44
src/main/java/eu/dnetlib/dhp/schema/oaf/Qualifier.java
View File

@ -2,10 +2,12 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.EqualsBuilder;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.google.common.base.Joiner;
public class Qualifier implements Serializable {
private static final long serialVersionUID = 6632548656644563076L;
@ -46,42 +48,4 @@ public class Qualifier implements Serializable {
this.schemename = schemename;
}
public String toComparableString() {
return isBlank()
? ""
: String
.format(
"%s::%s::%s::%s",
classid != null ? classid : "",
classname != null ? classname : "",
schemeid != null ? schemeid : "",
schemename != null ? schemename : "");
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(classid)
&& StringUtils.isBlank(classname)
&& StringUtils.isBlank(schemeid)
&& StringUtils.isBlank(schemename);
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Qualifier other = (Qualifier) obj;
return toComparableString().equals(other.toComparableString());
}
}

38
src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java
View File

@ -126,26 +126,9 @@ public class Relation extends Oaf {
this.validationDate = validationDate;
}
public void mergeFrom(final Relation r) {
checkArgument(Objects.equals(getSource(), r.getSource()), "source ids must be equal");
checkArgument(Objects.equals(getTarget(), r.getTarget()), "target ids must be equal");
checkArgument(Objects.equals(getRelType(), r.getRelType()), "relType(s) must be equal");
checkArgument(
Objects.equals(getSubRelType(), r.getSubRelType()), "subRelType(s) must be equal");
checkArgument(Objects.equals(getRelClass(), r.getRelClass()), "relClass(es) must be equal");
setValidated(getValidated() || r.getValidated());
try {
setValidationDate(ModelSupport.oldest(getValidationDate(), r.getValidationDate()));
} catch (ParseException e) {
throw new IllegalArgumentException(String
.format(
"invalid validation date format in relation [s:%s, t:%s]: %s", getSource(), getTarget(),
getValidationDate()));
}
super.mergeFrom(r);
@Override
public int hashCode() {
return Objects.hash(getRelType(), getSubRelType(), getRelClass(), getSource(), getTarget());
}
@Override
@ -155,16 +138,11 @@ public class Relation extends Oaf {
if (o == null || getClass() != o.getClass())
return false;
Relation relation = (Relation) o;
return relType.equals(relation.relType)
&& subRelType.equals(relation.subRelType)
&& relClass.equals(relation.relClass)
&& source.equals(relation.source)
&& target.equals(relation.target);
}
@Override
public int hashCode() {
return Objects.hash(relType, subRelType, relClass, source, target, collectedfrom);
return Objects.equals(getRelType(), relation.getRelType()) &&
Objects.equals(getSubRelType(), relation.getSubRelType()) &&
Objects.equals(getRelClass(), relation.getRelClass()) &&
Objects.equals(getSource(), relation.getSource()) &&
Objects.equals(getTarget(), relation.getTarget());
}
}

363
src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java
View File

@ -1,23 +1,11 @@
package eu.dnetlib.dhp.schema.oaf;
import static java.util.Objects.*;
import java.io.Serializable;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.commons.lang3.ObjectUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.ImmutablePair;
import org.apache.commons.lang3.tuple.Pair;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonProperty;
import eu.dnetlib.dhp.schema.common.AccessRightComparator;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
/**
* The type Result.
*/
@ -591,353 +579,4 @@ public class Result extends OafEntity implements Serializable {
this.publiclyFunded = publiclyFunded;
}
/**
* Is an enrichment boolean.
*
* @param e the e
* @return the boolean
*/
public static boolean isAnEnrichment(OafEntity e) {
return e.getDataInfo()!= null &&
e.getDataInfo().getProvenanceaction()!= null
&& ModelConstants.PROVENANCE_ENRICH.equalsIgnoreCase(e.getDataInfo().getProvenanceaction().getClassid());
}
/**
* Normalize pid string.
*
* @param pid the pid
* @return the string
*/
private static String extractKeyFromPid(final StructuredProperty pid) {
if (pid == null)
return null;
final StructuredProperty normalizedPid = CleaningFunctions.normalizePidValue(pid);
return String.format("%s::%s", normalizedPid.getQualifier().getClassid(), normalizedPid.getValue());
}
/**
* Valid pid boolean.
*
* @param p the p
* @return the boolean
*/
private static boolean validPid(final StructuredProperty p) {
return p.getValue()!= null && p.getQualifier()!= null && p.getQualifier().getClassid()!=null;
}
/**
* This method converts the list of instance enrichments
* into a Map where the key is the normalized identifier
* and the value is the instance itself
*
* @param ri the list of enrichment instances
* @return the result map
*/
public static Map<String, Instance> toInstanceMap(final List<Instance> ri) {
return ri
.stream()
.filter(i -> i.getPid() != null || i.getAlternateIdentifier() != null)
.flatMap(i -> {
final List<Pair<String, Instance>> result = new ArrayList<>();
if (i.getPid() != null)
i.getPid().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
if (i.getAlternateIdentifier() != null)
i.getAlternateIdentifier().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
return result.stream();
}).collect(Collectors.toMap(
Pair::getLeft,
Pair::getRight,
(a, b) -> a
));
}
/**
* This utility method finds the list of enrichment instances
* that match one or more PIDs in the input list
*
* @param pids the list of PIDs
* @param enrichments the List of enrichment instances having the same pid
* @return the list
*/
private static List<Instance> findEnrichmentsByPID(final List<StructuredProperty> pids, final Map<String,Instance> enrichments) {
if (pids == null || enrichments == null)
return null;
return pids
.stream()
.map(Result::extractKeyFromPid)
.map(enrichments::get)
.filter(Objects::nonNull)
.collect(Collectors.toList());
}
/**
* This method apply enrichment on a single instance
* The enrichment consists of replacing values on
* single attribute only if in the current instance is missing
* The only repeatable field enriched is measures
*
* @param currentInstance the current instance
* @param enrichment the enrichment instance
*/
private static void applyEnrichment(final Instance currentInstance, final Instance enrichment) {
if (currentInstance == null || enrichment == null)
return;
//ENRICH accessright
if (enrichment.getAccessright()!=null && currentInstance.getAccessright() == null)
currentInstance.setAccessright(enrichment.getAccessright());
//ENRICH license
if (enrichment.getLicense()!=null && currentInstance.getLicense() == null)
currentInstance.setLicense(enrichment.getLicense());
//ENRICH instanceType
if (enrichment.getInstancetype()!=null && currentInstance.getInstancetype() == null)
currentInstance.setInstancetype(enrichment.getInstancetype());
//ENRICH hostedby
if (enrichment.getHostedby()!=null && currentInstance.getHostedby() == null)
currentInstance.setHostedby(enrichment.getHostedby());
//ENRICH distributionlocation
if (enrichment.getDistributionlocation()!=null && currentInstance.getDistributionlocation() == null)
currentInstance.setDistributionlocation(enrichment.getDistributionlocation());
//ENRICH collectedfrom
if (enrichment.getCollectedfrom()!=null && currentInstance.getCollectedfrom() == null)
currentInstance.setCollectedfrom(enrichment.getCollectedfrom());
//ENRICH dateofacceptance
if (enrichment.getDateofacceptance()!=null && currentInstance.getDateofacceptance() == null)
currentInstance.setDateofacceptance(enrichment.getDateofacceptance());
//ENRICH processingchargeamount
if (enrichment.getProcessingchargeamount()!=null && currentInstance.getProcessingchargeamount() == null)
currentInstance.setProcessingchargeamount(enrichment.getProcessingchargeamount());
//ENRICH refereed
if (enrichment.getRefereed()!=null && currentInstance.getRefereed() == null)
currentInstance.setRefereed(enrichment.getRefereed());
//ENRICH measures
if (enrichment.getMeasures()!=null)
if (currentInstance.getMeasures() == null) {
currentInstance.setMeasures(enrichment.getMeasures());
} else {
enrichment.getMeasures().forEach(currentInstance.getMeasures()::add);
}
}
/**
* This main method apply the enrichment of the instances
*
* @param toEnrichInstances the instances that could be enriched
* @param enrichmentInstances the enrichment instances
* @return list of instances possibly enriched
*/
private static List<Instance> enrichInstances(final List<Instance> toEnrichInstances,final List<Instance> enrichmentInstances) {
final List<Instance> enrichmentResult = new ArrayList<>();
if (toEnrichInstances == null) {
return enrichmentResult;
}
if (enrichmentInstances == null) {
return toEnrichInstances;
}
Map<String, Instance> ri = toInstanceMap(enrichmentInstances);
toEnrichInstances.forEach(i -> {
final List<Instance> e = findEnrichmentsByPID(i.getPid(), ri);
if (e!= null && !e.isEmpty()) {
e.forEach(enr -> applyEnrichment(i, enr));
} else {
final List<Instance> a = findEnrichmentsByPID(i.getAlternateIdentifier(), ri);
if (a!= null && !a.isEmpty()) {
a.forEach(enr -> applyEnrichment(i, enr));
}
}
enrichmentResult.add(i);
});
return enrichmentResult;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Result.class.isAssignableFrom(e.getClass())) {
return;
}
Result r = (Result) e;
if(processingchargeamount == null || StringUtils.isBlank(processingchargeamount.getValue())){
processingchargeamount = r.getProcessingchargeamount();
processingchargecurrency = r.getProcessingchargecurrency();
}
if (Objects.isNull(getTransformativeAgreement()) && Objects.nonNull(r.getTransformativeAgreement())) {
setTransformativeAgreement(r.getTransformativeAgreement());
}
eoscifguidelines = mergeLists(eoscifguidelines, r.getEoscifguidelines());
setIsGreen(mergeBooleanOR(getIsGreen(), r.getIsGreen()));
setIsInDiamondJournal(mergeBooleanOR(getIsInDiamondJournal(), r.getIsInDiamondJournal()));
setPubliclyFunded(mergeBooleanOR(getPubliclyFunded(), r.getPubliclyFunded()));
if (Boolean.logicalXor(nonNull(getOpenAccessColor()), nonNull(r.getOpenAccessColor()))) {
setOpenAccessColor(ObjectUtils.firstNonNull(getOpenAccessColor(), r.getOpenAccessColor()));
} else if (!Objects.equals(getOpenAccessColor(), r.getOpenAccessColor())) {
setOpenAccessColor(null);
}
if( !isAnEnrichment(this) && !isAnEnrichment(e))
instance = mergeLists(instance, r.getInstance());
else {
final List<Instance> enrichmentInstances = isAnEnrichment(this) ? instance : r.getInstance();
final List<Instance> enrichedInstances= isAnEnrichment(this) ? r.getInstance(): instance;
if (isAnEnrichment(this))
setDataInfo(e.getDataInfo());
instance = enrichInstances(enrichedInstances,enrichmentInstances);
}
if (r.getBestaccessright() != null
&& new AccessRightComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)
resulttype = r.getResulttype();
if (r.getLanguage() != null && compareTrust(this, r) < 0)
language = r.getLanguage();
if (nonNull(r.getDateofacceptance())) {
if (isNull(getDateofacceptance())) {
dateofacceptance = r.getDateofacceptance();
} else if (compareTrust(this, r) < 0) {
dateofacceptance = r.getDateofacceptance();
}
}
country = mergeLists(country, r.getCountry());
subject = mergeLists(subject, r.getSubject());
// merge title lists: main title with higher trust and distinct between the others
StructuredProperty baseMainTitle = null;
if (title != null) {
baseMainTitle = getMainTitle(title);
if (baseMainTitle != null) {
final StructuredProperty p = baseMainTitle;
title = title.stream().filter(t -> t != p).collect(Collectors.toList());
}
}
StructuredProperty newMainTitle = null;
if (r.getTitle() != null) {
newMainTitle = getMainTitle(r.getTitle());
if (newMainTitle != null) {
final StructuredProperty p = newMainTitle;
r.setTitle(r.getTitle().stream().filter(t -> t != p).collect(Collectors.toList()));
}
}
if (newMainTitle != null && compareTrust(this, r) < 0) {
baseMainTitle = newMainTitle;
}
title = mergeLists(title, r.getTitle());
if (title != null && baseMainTitle != null) {
title.add(baseMainTitle);
}
relevantdate = mergeLists(relevantdate, r.getRelevantdate());
description = longestLists(description, r.getDescription());
if (r.getPublisher() != null && compareTrust(this, r) < 0)
publisher = r.getPublisher();
if (r.getEmbargoenddate() != null && compareTrust(this, r) < 0)
embargoenddate = r.getEmbargoenddate();
source = mergeLists(source, r.getSource());
fulltext = mergeLists(fulltext, r.getFulltext());
format = mergeLists(format, r.getFormat());
contributor = mergeLists(contributor, r.getContributor());
if (r.getResourcetype() != null)
resourcetype = r.getResourcetype();
coverage = mergeLists(coverage, r.getCoverage());
externalReference = mergeLists(externalReference, r.getExternalReference());
}
private Boolean mergeBooleanOR(Boolean a, Boolean b) {
if (Boolean.logicalXor(isNull(a), isNull(b))) {
return ObjectUtils.firstNonNull(a, b);
} else if (nonNull(a) & nonNull(b)) {
return a || b;
} else {
return null;
}
}
/**
* Longest lists list.
*
* @param a the a
* @param b the b
* @return the list
*/
private List<Field<String>> longestLists(List<Field<String>> a, List<Field<String>> b) {
if (a == null || b == null)
return a == null ? b : a;
if (a.size() == b.size()) {
int msa = a
.stream()
.filter(i -> i != null && i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
int msb = b
.stream()
.filter(i -> i != null && i.getValue() != null)
.map(i -> i.getValue().length())
.max(Comparator.naturalOrder())
.orElse(0);
return msa > msb ? a : b;
}
return a.size() > b.size() ? a : b;
}
/**
* Gets main title.
*
* @param titles the titles
* @return the main title
*/
private StructuredProperty getMainTitle(List<StructuredProperty> titles) {
// need to check if the list of titles contains more than 1 main title? (in that case, we should chose which
// main title select in the list)
for (StructuredProperty t : titles) {
if (t.getQualifier() != null && t.getQualifier().getClassid() != null)
if (t.getQualifier().getClassid().equals("main title"))
return t;
}
return null;
}
}

23
src/main/java/eu/dnetlib/dhp/schema/oaf/Software.java
View File

@ -56,27 +56,4 @@ public class Software extends Result implements Serializable {
this.programmingLanguage = programmingLanguage;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
if (!Software.class.isAssignableFrom(e.getClass())) {
return;
}
final Software s = (Software) e;
documentationUrl = mergeLists(documentationUrl, s.getDocumentationUrl());
license = mergeLists(license, s.getLicense());
codeRepositoryUrl = s.getCodeRepositoryUrl() != null && compareTrust(this, s) < 0
? s.getCodeRepositoryUrl()
: codeRepositoryUrl;
programmingLanguage = s.getProgrammingLanguage() != null && compareTrust(this, s) < 0
? s.getProgrammingLanguage()
: programmingLanguage;
mergeOAFDataInfo(e);
}
}

28
src/main/java/eu/dnetlib/dhp/schema/oaf/StructuredProperty.java
View File

@ -2,6 +2,7 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -42,31 +43,4 @@ public class StructuredProperty implements Serializable {
this.dataInfo = dataInfo;
}
public String toComparableString() {
return Stream
.of(
getQualifier().toComparableString(),
Optional.ofNullable(getValue()).map(String::toLowerCase).orElse(""))
.filter(StringUtils::isNotBlank)
.collect(Collectors.joining("||"));
}
@Override
public int hashCode() {
return toComparableString().hashCode();
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
StructuredProperty other = (StructuredProperty) obj;
return toComparableString().equals(other.toComparableString());
}
}

74
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/CleaningFunctions.java
View File

@ -1,74 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.HashSet;
import java.util.Objects;
import java.util.Optional;
import java.util.Set;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class CleaningFunctions {
public static final String DOI_PREFIX_REGEX = "(^10\\.|\\/10\\.)";
public static final String DOI_PREFIX = "10.";
public static final Set<String> PID_BLACKLIST = new HashSet<>();
static {
PID_BLACKLIST.add("none");
PID_BLACKLIST.add("na");
}
public CleaningFunctions() {}
/**
* Utility method that filter PID values on a per-type basis.
* @param s the PID whose value will be checked.
* @return false if the pid matches the filter criteria, true otherwise.
*/
public static boolean pidFilter(StructuredProperty s) {
final String pidValue = s.getValue();
if (Objects.isNull(s.getQualifier()) ||
StringUtils.isBlank(pidValue) ||
StringUtils.isBlank(pidValue.replaceAll("(?:\\n|\\r|\\t|\\s)", ""))) {
return false;
}
if (CleaningFunctions.PID_BLACKLIST.contains(pidValue)) {
return false;
}
return !PidBlacklistProvider.getBlacklist(s.getQualifier().getClassid()).contains(pidValue);
}
/**
* Utility method that normalises PID values on a per-type basis.
* @param pid the PID whose value will be normalised.
* @return the PID containing the normalised value.
*/
public static StructuredProperty normalizePidValue(StructuredProperty pid) {
pid.setValue(
normalizePidValue(
pid.getQualifier().getClassid(),
pid.getValue()));
return pid;
}
public static String normalizePidValue(String pidType, String pidValue) {
String value = Optional
.ofNullable(pidValue)
.map(String::trim)
.orElseThrow(() -> new IllegalArgumentException("PID value cannot be empty"));
switch (pidType) {
// TODO add cleaning for more PID types as needed
case "doi":
return value.toLowerCase().replaceFirst(DOI_PREFIX_REGEX, DOI_PREFIX);
}
return value;
}
}

292
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/IdentifierFactory.java
View File

@ -1,292 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import static com.google.common.base.Preconditions.checkArgument;
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
import java.io.Serializable;
import java.nio.charset.StandardCharsets;
import java.security.MessageDigest;
import java.util.*;
import java.util.function.Function;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.codec.binary.Hex;
import org.apache.commons.lang3.StringUtils;
import com.google.common.collect.HashBiMap;
import com.google.common.collect.Maps;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.*;
/**
* Factory class for OpenAIRE identifiers in the Graph
*/
public class IdentifierFactory implements Serializable {
public static final String ID_SEPARATOR = "::";
public static final String ID_PREFIX_SEPARATOR = "|";
public static final int ID_PREFIX_LEN = 12;
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, NAME] considered authoritative for that PID_TYPE.
* The id of the record (source_::id) will be rewritten as pidType_::id)
*/
public static final Map<PidType, HashBiMap<String, String>> PID_AUTHORITY = Maps.newHashMap();
static {
PID_AUTHORITY.put(PidType.doi, HashBiMap.create());
PID_AUTHORITY.get(PidType.doi).put(CROSSREF_ID, "Crossref");
PID_AUTHORITY.get(PidType.doi).put(DATACITE_ID, "Datacite");
PID_AUTHORITY.get(PidType.doi).put(ZENODO_OD_ID, "ZENODO");
PID_AUTHORITY.get(PidType.doi).put(ZENODO_R3_ID, "Zenodo");
PID_AUTHORITY.put(PidType.pmc, HashBiMap.create());
PID_AUTHORITY.get(PidType.pmc).put(EUROPE_PUBMED_CENTRAL_ID, "Europe PubMed Central");
PID_AUTHORITY.get(PidType.pmc).put(PUBMED_CENTRAL_ID, "PubMed Central");
PID_AUTHORITY.put(PidType.pmid, HashBiMap.create());
PID_AUTHORITY.get(PidType.pmid).put(EUROPE_PUBMED_CENTRAL_ID, "Europe PubMed Central");
PID_AUTHORITY.get(PidType.pmid).put(PUBMED_CENTRAL_ID, "PubMed Central");
PID_AUTHORITY.put(PidType.arXiv, HashBiMap.create());
PID_AUTHORITY.get(PidType.arXiv).put(ARXIV_ID, "arXiv.org e-Print Archive");
PID_AUTHORITY.put(PidType.w3id, HashBiMap.create());
PID_AUTHORITY.get(PidType.w3id).put(ROHUB_ID, "ROHub");
}
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, PID SUBSTRING] considered as delegated authority for that
* PID_TYPE. Example, Zenodo is delegated to forge DOIs that contain the 'zenodo' word.
*
* If a record with the same id (same pid) comes from 2 data sources, the one coming from a delegated source wins. E.g. Zenodo records win over those from Datacite.
* See also https://code-repo.d4science.org/D-Net/dnet-hadoop/pulls/187 and the class dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java
*/
public static final Map<PidType, Map<String, String>> DELEGATED_PID_AUTHORITY = Maps.newHashMap();
static {
DELEGATED_PID_AUTHORITY.put(PidType.doi, new HashMap<>());
DELEGATED_PID_AUTHORITY.get(PidType.doi).put(ZENODO_OD_ID, "zenodo");
DELEGATED_PID_AUTHORITY.get(PidType.doi).put(ZENODO_R3_ID, "zenodo");
DELEGATED_PID_AUTHORITY.put(PidType.w3id, new HashMap<>());
DELEGATED_PID_AUTHORITY.get(PidType.w3id).put(ROHUB_ID, "ro-id");
}
/**
* Declares the associations PID_TYPE -> [DATASOURCE ID, NAME] whose records are considered enrichment for the graph.
* Their OpenAIRE ID is built from the declared PID type. Are merged with their corresponding record, identified by
* the same OpenAIRE id.
*/
public static final Map<PidType, HashBiMap<String, String>> ENRICHMENT_PROVIDER = Maps.newHashMap();
static {
ENRICHMENT_PROVIDER.put(PidType.doi, HashBiMap.create());
ENRICHMENT_PROVIDER.get(PidType.doi).put(OPEN_APC_ID, OPEN_APC_NAME);
}
public static Set<String> delegatedAuthorityDatasourceIds() {
return DELEGATED_PID_AUTHORITY.values()
.stream()
.flatMap(m -> m.keySet().stream())
.collect(Collectors.toCollection(HashSet::new));
}
public static List<StructuredProperty> getPids(List<StructuredProperty> pid, KeyValue collectedFrom) {
return pidFromInstance(pid, collectedFrom, true).distinct().collect(Collectors.toList());
}
public static <T extends Result> String createDOIBoostIdentifier(T entity) {
if (entity == null)
return null;
StructuredProperty pid = null;
if (entity.getPid() != null) {
pid = entity
.getPid()
.stream()
.filter(Objects::nonNull)
.filter(s -> s.getQualifier() != null && "doi".equalsIgnoreCase(s.getQualifier().getClassid()))
.filter(CleaningFunctions::pidFilter)
.findAny()
.orElse(null);
} else {
if (entity.getInstance() != null) {
pid = entity
.getInstance()
.stream()
.filter(i -> i.getPid() != null)
.flatMap(i -> i.getPid().stream())
.filter(CleaningFunctions::pidFilter)
.findAny()
.orElse(null);
}
}
if (pid != null)
return idFromPid(entity, pid, true);
return null;
}
/**
* Creates an identifier from the most relevant PID (if available) provided by a known PID authority in the given
* entity T. Returns entity.id when none of the PIDs meet the selection criteria is available.
*
* @param entity the entity providing PIDs and a default ID.
* @param <T> the specific entity type. Currently Organization and Result subclasses are supported.
* @param md5 indicates whether should hash the PID value or not.
* @return an identifier from the most relevant PID, entity.id otherwise
*/
public static <T extends OafEntity> String createIdentifier(T entity, boolean md5) {
checkArgument(StringUtils.isNoneBlank(entity.getId()), "missing entity identifier");
final Map<String, Set<StructuredProperty>> pids = extractPids(entity);
return pids
.values()
.stream()
.flatMap(Set::stream)
.min(new PidComparator<>(entity))
.map(
min -> Optional
.ofNullable(pids.get(min.getQualifier().getClassid()))
.map(
p -> p
.stream()
.sorted(new PidValueComparator())
.findFirst()
.map(s -> idFromPid(entity, s, md5))
.orElseGet(entity::getId))
.orElseGet(entity::getId))
.orElseGet(entity::getId);
}
private static <T extends OafEntity> Map<String, Set<StructuredProperty>> extractPids(T entity) {
if (entity instanceof Result) {
return Optional
.ofNullable(((Result) entity).getInstance())
.map(IdentifierFactory::mapPids)
.orElse(new HashMap<>());
} else {
return entity
.getPid()
.stream()
.map(CleaningFunctions::normalizePidValue)
.filter(CleaningFunctions::pidFilter)
.collect(
Collectors
.groupingBy(
p -> p.getQualifier().getClassid(),
Collectors.mapping(p -> p, Collectors.toCollection(HashSet::new))));
}
}
private static Map<String, Set<StructuredProperty>> mapPids(List<Instance> instance) {
return instance
.stream()
.map(i -> pidFromInstance(i.getPid(), i.getCollectedfrom(), false))
.flatMap(Function.identity())
.collect(
Collectors
.groupingBy(
p -> p.getQualifier().getClassid(),
Collectors.mapping(p -> p, Collectors.toCollection(HashSet::new))));
}
private static Stream<StructuredProperty> pidFromInstance(List<StructuredProperty> pid, KeyValue collectedFrom,
boolean mapHandles) {
return Optional
.ofNullable(pid)
.map(
pp -> pp
.stream()
// filter away PIDs provided by a DS that is not considered an authority for the
// given PID Type
.filter(p -> shouldFilterPidByCriteria(collectedFrom, p, mapHandles))
.map(CleaningFunctions::normalizePidValue)
.filter(p -> isNotFromDelegatedAuthority(collectedFrom, p))
.filter(CleaningFunctions::pidFilter))
.orElse(Stream.empty());
}
private static boolean shouldFilterPidByCriteria(KeyValue collectedFrom, StructuredProperty p, boolean mapHandles) {
final PidType pType = PidType.tryValueOf(p.getQualifier().getClassid());
if (Objects.isNull(collectedFrom)) {
return false;
}
boolean isEnrich = Optional
.ofNullable(ENRICHMENT_PROVIDER.get(pType))
.map(enrich -> enrich.containsKey(collectedFrom.getKey())
|| enrich.containsValue(collectedFrom.getValue()))
.orElse(false);
boolean isAuthority = Optional
.ofNullable(PID_AUTHORITY.get(pType))
.map(authorities -> authorities.containsKey(collectedFrom.getKey())
|| authorities.containsValue(collectedFrom.getValue()))
.orElse(false);
return (mapHandles && pType.equals(PidType.handle)) || isEnrich || isAuthority;
}
private static boolean isNotFromDelegatedAuthority(KeyValue collectedFrom, StructuredProperty p) {
final PidType pType = PidType.tryValueOf(p.getQualifier().getClassid());
final Map<String, String> da = DELEGATED_PID_AUTHORITY.get(pType);
if (Objects.isNull(da)) {
return true;
}
if (!da.containsKey(collectedFrom.getKey())) {
return true;
}
return StringUtils.contains(p.getValue(), da.get(collectedFrom.getKey()));
}
/**
* @see {@link IdentifierFactory#createIdentifier(OafEntity, boolean)}
*/
public static <T extends OafEntity> String createIdentifier(T entity) {
return createIdentifier(entity, true);
}
private static <T extends OafEntity> String idFromPid(T entity, StructuredProperty s, boolean md5) {
return idFromPid(ModelSupport.getIdPrefix(entity.getClass()), s.getQualifier().getClassid(), s.getValue(), md5);
}
public static String idFromPid(String numericPrefix, String pidType, String pidValue, boolean md5) {
return new StringBuilder()
.append(numericPrefix)
.append(ID_PREFIX_SEPARATOR)
.append(createPrefix(pidType))
.append(ID_SEPARATOR)
.append(md5 ? md5(pidValue) : pidValue)
.toString();
}
// create the prefix (length = 12)
private static String createPrefix(String pidType) {
StringBuilder prefix = new StringBuilder(StringUtils.left(pidType, ID_PREFIX_LEN));
while (prefix.length() < ID_PREFIX_LEN) {
prefix.append("_");
}
return prefix.substring(0, ID_PREFIX_LEN);
}
public static String md5(final String s) {
try {
final MessageDigest md = MessageDigest.getInstance("MD5");
md.update(s.getBytes(StandardCharsets.UTF_8));
return new String(Hex.encodeHex(md.digest()));
} catch (final Exception e) {
return null;
}
}
}

26
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/ModelHardLimits.java
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@ -1,26 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
public class ModelHardLimits {
private ModelHardLimits() {}
public static final String LAYOUT = "index";
public static final String INTERPRETATION = "openaire";
public static final String SEPARATOR = "-";
public static final int MAX_EXTERNAL_ENTITIES = 50;
public static final int MAX_AUTHORS = 200;
public static final int MAX_AUTHOR_FULLNAME_LENGTH = 1000;
public static final int MAX_TITLE_LENGTH = 5000;
public static final int MAX_TITLES = 10;
public static final int MAX_ABSTRACTS = 10;
public static final int MAX_ABSTRACT_LENGTH = 150000;
public static final int MAX_RELATED_ABSTRACT_LENGTH = 500;
public static final int MAX_INSTANCES = 10;
public static String getCollectionName(String format) {
return format + SEPARATOR + LAYOUT + SEPARATOR + INTERPRETATION;
}
}

38
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OrganizationPidComparator.java
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@ -1,38 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class OrganizationPidComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
PidType lClass = PidType.tryValueOf(left.getQualifier().getClassid());
PidType rClass = PidType.tryValueOf(right.getQualifier().getClassid());
if (lClass.equals(PidType.openorgs))
return -1;
if (rClass.equals(PidType.openorgs))
return 1;
if (lClass.equals(PidType.GRID))
return -1;
if (rClass.equals(PidType.GRID))
return 1;
if (lClass.equals(PidType.mag_id))
return -1;
if (rClass.equals(PidType.mag_id))
return 1;
if (lClass.equals(PidType.urn))
return -1;
if (rClass.equals(PidType.urn))
return 1;
return 0;
}
}

8
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidBlacklist.java
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@ -1,8 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.HashMap;
import java.util.HashSet;
public class PidBlacklist extends HashMap<String, HashSet<String>> {
}

39
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidBlacklistProvider.java
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@ -1,39 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.io.IOException;
import java.util.HashSet;
import java.util.Optional;
import java.util.Set;
import org.apache.commons.io.IOUtils;
import com.fasterxml.jackson.databind.ObjectMapper;
public class PidBlacklistProvider {
private static final PidBlacklist blacklist;
static {
try {
String json = IOUtils.toString(IdentifierFactory.class.getResourceAsStream("pid_blacklist.json"));
blacklist = new ObjectMapper().readValue(json, PidBlacklist.class);
} catch (IOException e) {
throw new RuntimeException(e);
}
}
public static PidBlacklist getBlacklist() {
return blacklist;
}
public static Set<String> getBlacklist(String pidType) {
return Optional
.ofNullable(getBlacklist().get(pidType))
.orElse(new HashSet<>());
}
private PidBlacklistProvider() {}
}

48
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidComparator.java
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@ -1,48 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Organization;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class PidComparator<T extends OafEntity> implements Comparator<StructuredProperty> {
private final T entity;
public PidComparator(T entity) {
this.entity = entity;
}
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
if (ModelSupport.isSubClass(entity, Result.class)) {
return compareResultPids(left, right);
}
if (ModelSupport.isSubClass(entity, Organization.class)) {
return compareOrganizationtPids(left, right);
}
// Else (but unlikely), lexicographical ordering will do.
return left.getQualifier().getClassid().compareTo(right.getQualifier().getClassid());
}
private int compareResultPids(StructuredProperty left, StructuredProperty right) {
return new ResultPidComparator().compare(left, right);
}
private int compareOrganizationtPids(StructuredProperty left, StructuredProperty right) {
return new OrganizationPidComparator().compare(left, right);
}
}

79
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidType.java
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@ -1,79 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import org.apache.commons.lang3.EnumUtils;
public enum PidType {
/**
* The DOI syntax shall be made up of a DOI prefix and a DOI suffix separated by a forward slash.
*
* There is no defined limit on the length of the DOI name, or of the DOI prefix or DOI suffix.
*
* The DOI name is case-insensitive and can incorporate any printable characters from the legal graphic characters
* of Unicode. Further constraints on character use (e.g. use of language-specific alphanumeric characters) can be
* defined for an application by the ISO 26324 Registration Authority.
*
*
* DOI prefix: The DOI prefix shall be composed of a directory indicator followed by a registrant code.
* These two components shall be separated by a full stop (period). The directory indicator shall be "10" and
* distinguishes the entire set of character strings (prefix and suffix) as digital object identifiers within the
* resolution system.
*
* Registrant code: The second element of the DOI prefix shall be the registrant code. The registrant code is a
* unique string assigned to a registrant.
*
* DOI suffix: The DOI suffix shall consist of a character string of any length chosen by the registrant.
* Each suffix shall be unique to the prefix element that precedes it. The unique suffix can be a sequential number,
* or it might incorporate an identifier generated from or based on another system used by the registrant
* (e.g. ISAN, ISBN, ISRC, ISSN, ISTC, ISNI; in such cases, a preferred construction for such a suffix can be
* specified, as in Example 1).
*
* Source: https://www.doi.org/doi_handbook/2_Numbering.html#2.2
*/
doi,
/**
* PubMed Unique Identifier (PMID)
*
* This field is a 1-to-8 digit accession number with no leading zeros. It is present on all records and is the
* accession number for managing and disseminating records. PMIDs are not reused after records are deleted.
*
* Beginning in February 2012 PMIDs include extensions following a decimal point to account for article versions
* (e.g., 21804956.2). All citations are considered version 1 until replaced. The extended PMID is not displayed
* on the MEDLINE format.
*
* View the citation in abstract format in PubMed to access additional versions when available (see the article in
* the Jan-Feb 2012 NLM Technical Bulletin).
*
* Source: https://www.nlm.nih.gov/bsd/mms/medlineelements.html#pmid
*/
pmid,
/**
* This field contains the unique identifier for the cited article in PubMed Central. The identifier begins with the
* prefix PMC.
*
* Source: https://www.nlm.nih.gov/bsd/mms/medlineelements.html#pmc
*/
pmc, handle, arXiv, nct, pdb, w3id,
// Organization
openorgs, ROR, GRID, PIC, ISNI, Wikidata, FundRef, corda, corda_h2020, mag_id, urn,
// Used by dedup
undefined, original;
public static boolean isValid(String type) {
return EnumUtils.isValidEnum(PidType.class, type);
}
public static PidType tryValueOf(String s) {
try {
return PidType.valueOf(s);
} catch (Exception e) {
return PidType.original;
}
}
}

33
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidValueComparator.java
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@ -1,33 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import java.util.Optional;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class PidValueComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
StructuredProperty l = CleaningFunctions.normalizePidValue(left);
StructuredProperty r = CleaningFunctions.normalizePidValue(right);
return Optional
.ofNullable(l.getValue())
.map(
lv -> Optional
.ofNullable(r.getValue())
.map(rv -> lv.compareTo(rv))
.orElse(-1))
.orElse(1);
}
}

53
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/ResultPidComparator.java
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@ -1,53 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Comparator;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class ResultPidComparator implements Comparator<StructuredProperty> {
@Override
public int compare(StructuredProperty left, StructuredProperty right) {
PidType lClass = PidType.tryValueOf(left.getQualifier().getClassid());
PidType rClass = PidType.tryValueOf(right.getQualifier().getClassid());
if (lClass.equals(PidType.doi))
return -1;
if (rClass.equals(PidType.doi))
return 1;
if (lClass.equals(PidType.pmid))
return -1;
if (rClass.equals(PidType.pmid))
return 1;
if (lClass.equals(PidType.pmc))
return -1;
if (rClass.equals(PidType.pmc))
return 1;
if (lClass.equals(PidType.handle))
return -1;
if (rClass.equals(PidType.handle))
return 1;
if (lClass.equals(PidType.arXiv))
return -1;
if (rClass.equals(PidType.arXiv))
return 1;
if (lClass.equals(PidType.nct))
return -1;
if (rClass.equals(PidType.nct))
return 1;
if (lClass.equals(PidType.pdb))
return -1;
if (rClass.equals(PidType.pdb))
return 1;
return 0;
}
}

77
src/main/java/eu/dnetlib/dhp/schema/oaf/utils/ResultTypeComparator.java
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@ -1,77 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import static eu.dnetlib.dhp.schema.common.ModelConstants.CROSSREF_ID;
import java.util.Comparator;
import java.util.HashSet;
import java.util.Optional;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Result;
public class ResultTypeComparator implements Comparator<Result> {
@Override
public int compare(Result left, Result right) {
if (left == null && right == null)
return 0;
if (left == null)
return 1;
if (right == null)
return -1;
HashSet<String> lCf = getCollectedFromIds(left);
HashSet<String> rCf = getCollectedFromIds(right);
if (lCf.contains(CROSSREF_ID) && !rCf.contains(CROSSREF_ID)) {
return -1;
}
if (!lCf.contains(CROSSREF_ID) && rCf.contains(CROSSREF_ID)) {
return 1;
}
String lClass = left.getResulttype().getClassid();
String rClass = right.getResulttype().getClassid();
if (lClass.equals(rClass))
return 0;
if (lClass.equals(ModelConstants.PUBLICATION_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.PUBLICATION_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.DATASET_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.DATASET_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.SOFTWARE_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.SOFTWARE_RESULTTYPE_CLASSID))
return 1;
if (lClass.equals(ModelConstants.ORP_RESULTTYPE_CLASSID))
return -1;
if (rClass.equals(ModelConstants.ORP_RESULTTYPE_CLASSID))
return 1;
// Else (but unlikely), lexicographical ordering will do.
return lClass.compareTo(rClass);
}
protected HashSet<String> getCollectedFromIds(Result left) {
return Optional
.ofNullable(left.getCollectedfrom())
.map(
cf -> cf
.stream()
.map(KeyValue::getKey)
.collect(Collectors.toCollection(HashSet::new)))
.orElse(new HashSet<>());
}
}

709
src/test/java/eu/dnetlib/dhp/schema/oaf/MergeTest.java
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@ -1,709 +0,0 @@
package eu.dnetlib.dhp.schema.oaf;
import static org.junit.jupiter.api.Assertions.*;
import java.io.IOException;
import java.io.InputStream;
import java.time.format.DateTimeParseException;
import java.util.Arrays;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Lists;
/**
* The type Merge test.
*/
class MergeTest {
/**
* The Oaf.
*/
OafEntity oaf;
/**
* Sets up.
*/
@BeforeEach
public void setUp() {
oaf = new Publication();
}
/**
* Merge lists test.
*/
@Test
@SuppressWarnings("unchecked")
void mergeListsTest() {
// string list merge test
List<String> a = Arrays.asList("a", "b", "c", "e");
List<String> b = Arrays.asList("a", "b", "c", "d");
List<String> c = null;
System.out.println("merge result 1 = " + oaf.mergeLists(a, b));
System.out.println("merge result 2 = " + oaf.mergeLists(a, c));
System.out.println("merge result 3 = " + oaf.mergeLists(c, c));
}
/**
* Merge publication collected from test.
*/
@Test
void mergePublicationCollectedFromTest() {
Publication a = publication();
Publication b = publication();
a.setCollectedfrom(Arrays.asList(setKV("a", "open"), setKV("b", "closed")));
b.setCollectedfrom(Arrays.asList(setKV("A", "open"), setKV("b", "Open")));
a.mergeFrom(b);
assertNotNull(a.getCollectedfrom());
assertEquals(3, a.getCollectedfrom().size());
}
/**
* Load resource result list.
*
* @param <T> the type parameter
* @param path the path
* @param clazz the clazz
* @return the list
* @throws Exception the exception
*/
private <T extends Result> List<Result> loadResourceResult(final String path, final Class<T> clazz ) throws Exception {
final ObjectMapper mapper = new ObjectMapper();
final InputStream str = Objects.requireNonNull(getClass().getResourceAsStream(path));
// LOAD test publications
return IOUtils.readLines(str).stream().map(s -> {
try {
return mapper.readValue(s, clazz);
} catch (IOException e) {
return null;
}
}).filter(Objects::nonNull).collect(Collectors.toList());
}
/**
* Apply to any test list result the same pid of the enrichment instance
*
* @param source the source
* @param enrichment the enrichment
* @param overrideAlternateIdentifier the override alternate identifier
*/
private void updatePidIntoPublicationInstance(final List<Result> source, final List<Result>enrichment, final boolean overrideAlternateIdentifier) {
for(int i = 0 ; i< source.size(); i++) {
final Result currentPub = source.get(i);
final Result currentEnrichment = enrichment.get(i);
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
if (overrideAlternateIdentifier)
currentInstance.setAlternateIdentifier(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
else
currentInstance.setPid(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
}
}
private void applyAndVerifyEnrichment(final List<Result> l1, final List<Result> l2) {
// Apply Merge and verify that enrichments works
for(int i = 0 ; i< l1.size(); i++) {
final Result currentPub = l2.get(i);
final Result currentEnrichment = l1.get(i);
currentPub.mergeFrom(currentEnrichment);
assertEquals(1, currentPub.getInstance().size());
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
assertNotNull(currentInstance.getMeasures());
assertNotNull(currentPub.getTitle());
assertFalse(Result.isAnEnrichment(currentPub));
}
}
/**
* Test the merge of the APC at the level of the result and the instance.
*
* @throws Exception the exception
*/
@Test
void testAPCMerge() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_apc.json", Publication.class);
System.out.println(publications.size());
publications.forEach(p -> assertEquals(1, p.getInstance().size()));
publications.forEach(p -> assertNotNull(p.getProcessingchargeamount()));
publications.forEach(p -> assertNotNull(p.getProcessingchargecurrency()));
publications.forEach(p -> assertTrue(StringUtils.isNotBlank(p.getProcessingchargeamount().getValue() )));
publications.forEach(p -> assertTrue(StringUtils.isNotBlank(p.getProcessingchargecurrency().getValue() )));
publications.forEach(p -> p.getInstance().forEach(i -> assertNotNull(i.getProcessingchargeamount())));
publications.forEach(p -> p.getInstance().forEach(i -> assertNotNull(i.getProcessingchargecurrency())));
publications.forEach(p -> p.getInstance().forEach(i -> assertTrue(StringUtils.isNotBlank(i.getProcessingchargeamount().getValue()))));
publications.forEach(p -> p.getInstance().forEach(i -> assertTrue(StringUtils.isNotBlank(i.getProcessingchargecurrency().getValue()))));
Result p1 = publications.get(0);
Result p2 = publications.get(1);
p1.mergeFrom(p2);
assertEquals("1721.47", p1.getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getProcessingchargecurrency().getValue());
assertEquals(2 , p1.getInstance().size());
p1.getInstance().forEach(i -> assertNotNull(i.getProcessingchargeamount()));
p1.getInstance().forEach(i -> assertNotNull(i.getProcessingchargecurrency()));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount().getValue().equals("2000.47")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount().getValue().equals("1721.47")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency().getValue().equals("EUR")));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency().getValue().equals("USD")));
System.out.println(new ObjectMapper().writeValueAsString(p1));
}
@Test
void testAPCMerge2() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_apc2.json", Publication.class);
System.out.println(publications.size());
publications.forEach(p -> assertEquals(1, p.getInstance().size()));
assertNotNull(publications.get(0).getProcessingchargeamount());
assertNotNull(publications.get(0).getProcessingchargecurrency());
assertNull(publications.get(1).getProcessingchargeamount());
Result p1 = publications.get(1);
Result p2 = publications.get(0);
//merge visible record with OpenAPC
p1.mergeFrom(p2);
assertFalse(p1.getDataInfo().getInvisible());
assertEquals("1721.47", p1.getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getProcessingchargecurrency().getValue());
assertEquals(2 , p1.getInstance().size());
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount() != null));
assertTrue(p1.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency() != null));
assertEquals("1721.47", p1.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargeamount().getValue());
assertEquals("EUR", p1.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargecurrency().getValue());
assertFalse(p1.getDataInfo().getInvisible());
System.out.println(new ObjectMapper().writeValueAsString(p1));
//merge OpenAPC with visible record
p2.mergeFrom(p1);
assertFalse(p2.getDataInfo().getInvisible());
assertEquals("1721.47", p2.getProcessingchargeamount().getValue());
assertEquals("EUR", p2.getProcessingchargecurrency().getValue());
assertEquals(2 , p2.getInstance().size());
assertTrue(p2.getInstance().stream().anyMatch(i -> i.getProcessingchargeamount() != null));
assertTrue(p2.getInstance().stream().anyMatch(i -> i.getProcessingchargecurrency() != null));
assertEquals("1721.47", p2.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargeamount().getValue());
assertEquals("EUR", p2.getInstance().stream().filter(i -> i.getProcessingchargeamount() != null)
.collect(Collectors.toList()).get(0).getProcessingchargecurrency().getValue());
}
@Test
void test_merge_irish_1() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_1.json", Publication.class);
Publication p = new Publication();
publications.forEach(p::mergeFrom);
assertNotNull(p);
assertTrue(p.getIsGreen());
assertTrue(p.getIsInDiamondJournal());
assertFalse(p.getPubliclyFunded());
assertEquals(OpenAccessColor.gold, p.getOpenAccessColor());
}
@Test
void test_merge_irish_2() throws Exception {
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_2.json", Publication.class);
Publication p = new Publication();
publications.forEach(p::mergeFrom);
assertNotNull(p);
assertTrue(p.getIsGreen());
assertTrue(p.getIsInDiamondJournal());
assertFalse(p.getPubliclyFunded());
assertNull(p.getOpenAccessColor());
}
/**
* Test enrichment function.
*
* @throws Exception the exception
*/
@Test
void testEnrichment() throws Exception {
// 1 TEST UPDATING PID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
// LOAD test publications
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
// Assert that each publication has only one instance and inside that all the measure field is empty
publications.forEach(p -> {
assertEquals(1, p.getInstance().size());
final Instance currentInstance = Objects.requireNonNull(p.getInstance()).get(0);
assertNull(currentInstance.getMeasures());
});
// LOAD test enrichments
List<Result> enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, false);
applyAndVerifyEnrichment(publications, enrichment);
// 2 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, true);
applyAndVerifyEnrichment(publications, enrichment);
// 3 TEST UPDATING PID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, false);
applyAndVerifyEnrichment( enrichment, publications);
// 4 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
updatePidIntoPublicationInstance(publications, enrichment, true);
applyAndVerifyEnrichment( enrichment, publications);
}
/**
* Merge publication date of acceptance test both present.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent() {
Publication a = publication();
Publication b = publication();
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test both present 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent_1() {
Publication a = publication("0.8");
Publication b = publication("0.9");
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test both present 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_bothPresent_2() {
Publication a = publication("0.9");
Publication b = publication("0.8");
a.setDateofacceptance(field("2021-06-18"));
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing() {
Publication a = publication();
Publication b = publication();
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing_1() {
Publication a = publication("0.9");
Publication b = publication("0.8");
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test left missing 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_leftMissing_2() {
Publication a = publication("0.8");
Publication b = publication("0.9");
b.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing() {
Publication a = publication();
Publication b = publication();
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing 1.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing_1() {
Publication a = publication("0.8");
Publication b = publication("0.9");
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication date of acceptance test right missing 2.
*/
@Test
void mergePublicationDateOfAcceptanceTest_rightMissing_2() {
Publication a = publication("0.9");
Publication b = publication("0.8");
a.setDateofacceptance(field("2021-06-19"));
a.mergeFrom(b);
assertNotNull(a.getDateofacceptance());
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
}
/**
* Merge publication subject test.
*/
@Test
void mergePublicationSubjectTest() {
Publication a = publication();
Publication b = publication();
a.setSubject(Arrays.asList(setSub("a", "open", "classe"), setSub("b", "open", "classe")));
b.setSubject(Arrays.asList(setSub("A", "open", "classe"), setSub("c", "open", "classe")));
a.mergeFrom(b);
assertNotNull(a.getSubject());
assertEquals(3, a.getSubject().size());
}
/**
* Merge publication EoscIfGuidelines test.
*/
@Test
void mergePublicationEoscIfGuidelinesTest() {
Publication a = publication();
Publication b = publication();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
a.mergeFrom(b);
assertNotNull(a.getEoscifguidelines());
assertEquals(1, a.getEoscifguidelines().size());
a.getEoscifguidelines().clear();
b.getEoscifguidelines().clear();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.mergeFrom(a);
assertNotNull(a.getEoscifguidelines());
assertEquals(1, a.getEoscifguidelines().size());
EoscIfGuidelines e = b.getEoscifguidelines().get(0);
assertEquals("a", e.getCode());
assertEquals("label a", e.getLabel());
assertEquals("https://aaa.aa", e.getUrl());
assertEquals("semRelA", e.getSemanticRelation());
a.getEoscifguidelines().clear();
b.getEoscifguidelines().clear();
a.setEoscifguidelines(Lists.newArrayList(eoscifg("a", "label a", "https://aaa.aa", "semRelA")));
b.setEoscifguidelines(Lists.newArrayList(eoscifg("b", "label b", "https://bbb.bb", "semRelB")));
a.mergeFrom(b);
assertNotNull(a.getEoscifguidelines());
assertEquals(2, a.getEoscifguidelines().size());
}
private EoscIfGuidelines eoscifg(String code, String label, String url, String semrel) {
EoscIfGuidelines e = new EoscIfGuidelines();
e.setCode(code);
e.setLabel(label);
e.setUrl(url);
e.setSemanticRelation(semrel);
return e;
}
/**
* Merge relation test.
*/
@Test
void mergeRelationTest() {
Relation a = createRel(null, null);
Relation b = createRel(null, null);
a.mergeFrom(b);
assertEquals(a, b);
a = createRel(true, null);
b = createRel(null, null);
a.mergeFrom(b);
assertEquals(true, a.getValidated());
a = createRel(true, null);
b = createRel(false, null);
a.mergeFrom(b);
assertEquals(true, a.getValidated());
a = createRel(true, null);
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
a = createRel(true, "2016-05-07T12:41:19.202Z");
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
a = createRel(true, "2020-09-10 11:08:52");
b = createRel(true, "2021-09-10 11:08:52");
a.mergeFrom(b);
assertEquals("2020-09-10 11:08:52", a.getValidationDate());
a = createRel(true, "2021-03-16T10:32:42Z");
b = createRel(true, "2020-03-16T10:32:42Z");
a.mergeFrom(b);
assertEquals("2020-03-16T10:32:42Z", a.getValidationDate());
}
/**
* Merge relation test parse exception.
*/
@Test
void mergeRelationTestParseException() {
assertThrows(DateTimeParseException.class, () -> {
Relation a = createRel(true, "Once upon a time ...");
Relation b = createRel(true, "... in a far away land");
a.mergeFrom(b);
});
}
/**
* Create rel relation.
*
* @param validated the validated
* @param validationDate the validation date
* @return the relation
*/
private Relation createRel(Boolean validated, String validationDate) {
Relation rel = new Relation();
rel.setSource("1");
rel.setTarget("2");
rel.setRelType("reltype");
rel.setSubRelType("subreltype");
rel.setRelClass("relclass");
rel.setValidated(validated);
rel.setValidationDate(validationDate);
return rel;
}
/**
* Sets kv.
*
* @param key the key
* @param value the value
* @return the kv
*/
private KeyValue setKV(final String key, final String value) {
KeyValue k = new KeyValue();
k.setKey(key);
k.setValue(value);
return k;
}
private Subject setSub(final String value, final String schema, final String classname) {
Subject s = new Subject();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
/**
* Sets sp.
*
* @param value the value
* @param schema the schema
* @param classname the classname
* @return the sp
*/
private StructuredProperty setSP(
final String value, final String schema, final String classname) {
StructuredProperty s = new StructuredProperty();
s.setValue(value);
Qualifier q = new Qualifier();
q.setClassname(classname);
q.setClassid(classname);
q.setSchemename(schema);
q.setSchemeid(schema);
s.setQualifier(q);
return s;
}
/**
* Field field.
*
* @param <T> the type parameter
* @param value the value
* @return the field
*/
private <T> Field<T> field(T value) {
Field<T> f = new Field();
f.setValue(value);
return f;
}
/**
* Publication publication.
*
* @return the publication
*/
private Publication publication() {
Publication p = new Publication();
p.setDataInfo(df("0.9"));
return p;
}
/**
* Publication publication.
*
* @param trust the trust
* @return the publication
*/
private Publication publication(String trust) {
Publication p = new Publication();
p.setDataInfo(df(trust));
return p;
}
/**
* Df data info.
*
* @param trust the trust
* @return the data info
*/
private DataInfo df(String trust) {
DataInfo d = new DataInfo();
d.setTrust(trust);
return d;
}
}

21
src/test/java/eu/dnetlib/dhp/schema/oaf/utils/BlackListProviderTest.java
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@ -1,21 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.Set;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
class BlackListProviderTest {
@Test
void blackListTest() {
Assertions.assertNotNull(PidBlacklistProvider.getBlacklist());
Assertions.assertNotNull(PidBlacklistProvider.getBlacklist().get("doi"));
Assertions.assertTrue(PidBlacklistProvider.getBlacklist().get("doi").size() > 0);
final Set<String> xxx = PidBlacklistProvider.getBlacklist("xxx");
Assertions.assertNotNull(xxx);
Assertions.assertEquals(0, xxx.size());
}
}

87
src/test/java/eu/dnetlib/dhp/schema/oaf/utils/IdentifierFactoryTest.java
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@ -1,87 +0,0 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import java.io.IOException;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Publication;
class IdentifierFactoryTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
@Test
void testCreateIdentifierForPublication() throws IOException {
verifyIdentifier(
"publication_doi1.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
verifyIdentifier(
"publication_doi2.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
verifyIdentifier(
"publication_doi3.json", "50|pmc_________::94e4cb08c93f8733b48e2445d04002ac", true);
verifyIdentifier(
"publication_doi4.json", "50|od______2852::38861c44e6052a8d49f59a4c39ba5e66", true);
verifyIdentifier(
"publication_doi5.json", "50|doi_________::3bef95c0ca26dd55451fc8839ea69d27", true);
verifyIdentifier(
"publication_pmc1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", true);
verifyIdentifier(
"publication_pmc2.json", "50|pmc_________::94e4cb08c93f8733b48e2445d04002ac", true);
verifyIdentifier(
"publication_openapc.json", "50|doi_________::79dbc7a2a56dc1532659f9038843256e", true);
final String defaultID = "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f";
verifyIdentifier("publication_3.json", defaultID, true);
verifyIdentifier("publication_4.json", defaultID, true);
verifyIdentifier("publication_5.json", defaultID, true);
}
@Test
void testCreateIdentifierForPublicationNoHash() throws IOException {
verifyIdentifier("publication_doi1.json", "50|doi_________::10.1016/j.cmet.2010.03.013", false);
verifyIdentifier("publication_doi2.json", "50|doi_________::10.1016/j.cmet.2010.03.013", false);
verifyIdentifier("publication_pmc1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", false);
verifyIdentifier(
"publication_urn1.json", "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", false);
final String defaultID = "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f";
verifyIdentifier("publication_3.json", defaultID, false);
verifyIdentifier("publication_4.json", defaultID, false);
verifyIdentifier("publication_5.json", defaultID, false);
}
@Test
void testCreateIdentifierForROHub() throws IOException {
verifyIdentifier(
"orp-rohub.json", "50|w3id________::afc7592914ae190a50570db90f55f9c2", true);
}
protected void verifyIdentifier(String filename, String expectedID, boolean md5) throws IOException {
final String json = IOUtils.toString(getClass().getResourceAsStream(filename));
final Publication pub = OBJECT_MAPPER.readValue(json, Publication.class);
String id = IdentifierFactory.createIdentifier(pub, md5);
System.out.println(id);
assertNotNull(id);
assertEquals(expectedID, id);
}
}

1
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/dataset_1.json
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@ -1 +0,0 @@
{"id":"50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1g", "resuttype" : { "classid" : "dataset" }, "pid":[{"qualifier":{"classid":"doi"},"value":"10.1016/j.cmet.2011.03.013"},{"qualifier":{"classid":"urn"},"value":"urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"},{"qualifier":{"classid":"scp-number"},"value":"79953761260"},{"qualifier":{"classid":"pmc"},"value":"21459329"}], "collectedfrom" : [ { "key" : "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", "value" : "Crossref"} ]}

1
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/dataset_2.json
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@ -1 +0,0 @@
{"id":"50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1g", "resuttype" : { "classid" : "dataset" }, "pid":[{"qualifier":{"classid":"doi"},"value":"10.1016/j.cmet.2011.03.013"},{"qualifier":{"classid":"urn"},"value":"urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"},{"qualifier":{"classid":"scp-number"},"value":"79953761260"},{"qualifier":{"classid":"pmc"},"value":"21459329"}], "collectedfrom" : [ { "key" : "10|openaire____::081b82f96300b6a6e3d282bad31cb6e3", "value" : "Repository B"} ]}

12
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json
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@ -1,12 +0,0 @@
{"dataInfo":{"deletedbyinference":false,"inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:enrich","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"id":"unresolved::10.0000/ra.v2i3.114::doi","instance":[{"measures":[{"id":"influence","unit":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"update","inferred":true,"invisible":false,"provenanceaction":{"classid":"measure:bip","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":""},"key":"score","value":"5.91019644836e-09"}]},{"id":"popularity_alt","unit":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"update","inferred":true,"invisible":false,"provenanceaction":{"classid":"measure:bip","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":""},"key":"score","value":"0.0"}]},{"id":"popularity","unit":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"update","inferred":true,"invisible":false,"provenanceaction":{"classid":"measure:bip","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":""},"key":"score","value":"4.65008652949e-09"}]}],"pid":[{"qualifier":{"classid":"doi","classname":"Digital Object Identifier","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.0000/ra.v2i3.114"}]}]}
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3
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_1.json
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@ -1,3 +0,0 @@
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3
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_irish_tender_2.json
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@ -1,3 +0,0 @@
{"id":"50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f", "resulttype" : { "classid" : "publication" }, "pid":[{"qualifier":{"classid":"doi"},"value":"10.1016/j.cmet.2011.03.013"},{"qualifier":{"classid":"urn"},"value":"urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"},{"qualifier":{"classid":"scp-number"},"value":"79953761260"},{"qualifier":{"classid":"pmc"},"value":"21459329"}], "collectedfrom" : [ { "key" : "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", "value" : "Crossref"} ], "isGreen": null, "openAccessColor": "gold", "isInDiamondJournal": null, "publiclyFunded": null}
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31
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_openapc.json
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@ -1,31 +0,0 @@
{
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17
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_pmc1.json
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@ -1,17 +0,0 @@
{
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21
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_pmc2.json
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@ -1,21 +0,0 @@
{
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23
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publication_urn1.json
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@ -1,23 +0,0 @@
{
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12
src/test/resources/eu/dnetlib/dhp/schema/oaf/utils/publications.json
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