merged from master
This commit is contained in:
commit
3d864ade94
|
|
@ -4,6 +4,7 @@
|
|||
|
||||
| **Version** | **Changes** | **Readiness** |
|
||||
|--------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---|
|
||||
| 2.10.25 | [Graph model]</br>implements enrichment on Result specializing in the method mergefrom. | beta |
|
||||
| 2.10.24 | [Graph model]</br>added utility method and constants for checking weather is an OafEntity represents an enrichment. | beta |
|
||||
| 2.9.24 | [Dump model]</br>change the names of the classes to be able to automatically create the json schema with specific descriptions | beta |
|
||||
| 2.9.23 | [Graph model]<br>Added Instance.measures field, allowing to maintain the association between them and the individual result instance</br>[Dump model]</br>added json schemas | beta |
|
||||
|
|
|
|||
4
pom.xml
4
pom.xml
|
|
@ -5,7 +5,7 @@
|
|||
<groupId>eu.dnetlib.dhp</groupId>
|
||||
<artifactId>dhp-schemas</artifactId>
|
||||
<packaging>jar</packaging>
|
||||
<version>2.10.25-SNAPSHOT</version>
|
||||
<version>2.10.26-SNAPSHOT</version>
|
||||
|
||||
<licenses>
|
||||
<license>
|
||||
|
|
@ -32,7 +32,7 @@
|
|||
<connection>scm:git:gitea@code-repo.d4science.org:D-Net/dhp-schemas.git</connection>
|
||||
<developerConnection>scm:git:gitea@code-repo.d4science.org:D-Net/dhp-schemas.git</developerConnection>
|
||||
<url>https://code-repo.d4science.org/D-Net/dhp-schemas/</url>
|
||||
<tag>dhp-schemas-2.10.24</tag>
|
||||
<tag>dhp-schemas-2.10.25</tag>
|
||||
</scm>
|
||||
|
||||
<description>This module contains common schema classes meant to be used across the dnet-hadoop submodules</description>
|
||||
|
|
|
|||
|
|
@ -2,253 +2,715 @@
|
|||
package eu.dnetlib.dhp.schema.oaf;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.Comparator;
|
||||
import java.util.List;
|
||||
import java.util.Objects;
|
||||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.lang3.tuple.ImmutablePair;
|
||||
import org.apache.commons.lang3.tuple.Pair;
|
||||
|
||||
import eu.dnetlib.dhp.schema.common.AccessRightComparator;
|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants;
|
||||
import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
|
||||
|
||||
import javax.validation.Valid;
|
||||
import javax.validation.constraints.NotEmpty;
|
||||
import javax.validation.constraints.NotNull;
|
||||
|
||||
import eu.dnetlib.dhp.schema.common.AccessRightComparator;
|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants;
|
||||
|
||||
/**
|
||||
* The type Result.
|
||||
*/
|
||||
public class Result extends OafEntity implements Serializable {
|
||||
|
||||
/**
|
||||
* The Measures.
|
||||
*/
|
||||
private List<Measure> measures;
|
||||
|
||||
/**
|
||||
* The Author.
|
||||
*/
|
||||
private List<Author> author;
|
||||
|
||||
// resulttype allows subclassing results into publications | datasets | software
|
||||
/**
|
||||
* The Resulttype, allows subclassing results into publications | datasets | software
|
||||
*/
|
||||
@Valid
|
||||
@NotNull
|
||||
private Qualifier resulttype;
|
||||
|
||||
// common fields
|
||||
/**
|
||||
* The Language.
|
||||
*/
|
||||
private Qualifier language;
|
||||
|
||||
/**
|
||||
* The Country.
|
||||
*/
|
||||
private List<Country> country;
|
||||
|
||||
/**
|
||||
* The Subject.
|
||||
*/
|
||||
private List<StructuredProperty> subject;
|
||||
|
||||
/**
|
||||
* The Title.
|
||||
*/
|
||||
private List<StructuredProperty> title;
|
||||
|
||||
/**
|
||||
* The Relevantdate.
|
||||
*/
|
||||
private List<StructuredProperty> relevantdate;
|
||||
|
||||
/**
|
||||
* The Description.
|
||||
*/
|
||||
private List<Field<String>> description;
|
||||
|
||||
/**
|
||||
* The Dateofacceptance.
|
||||
*/
|
||||
private Field<String> dateofacceptance;
|
||||
|
||||
/**
|
||||
* The Publisher.
|
||||
*/
|
||||
private Field<String> publisher;
|
||||
|
||||
/**
|
||||
* The Embargoenddate.
|
||||
*/
|
||||
private Field<String> embargoenddate;
|
||||
|
||||
/**
|
||||
* The Source.
|
||||
*/
|
||||
private List<Field<String>> source;
|
||||
|
||||
/**
|
||||
* The Fulltext.
|
||||
*/
|
||||
private List<Field<String>> fulltext; // remove candidate
|
||||
|
||||
/**
|
||||
* The Format.
|
||||
*/
|
||||
private List<Field<String>> format;
|
||||
|
||||
/**
|
||||
* The Contributor.
|
||||
*/
|
||||
private List<Field<String>> contributor;
|
||||
|
||||
/**
|
||||
* The Resourcetype.
|
||||
*/
|
||||
private Qualifier resourcetype;
|
||||
|
||||
/**
|
||||
* The Coverage.
|
||||
*/
|
||||
private List<Field<String>> coverage;
|
||||
|
||||
/**
|
||||
* The Bestaccessright.
|
||||
*/
|
||||
@Valid
|
||||
@NotNull
|
||||
private Qualifier bestaccessright;
|
||||
|
||||
/**
|
||||
* The Context.
|
||||
*/
|
||||
private List<Context> context;
|
||||
|
||||
/**
|
||||
* The External reference.
|
||||
*/
|
||||
private List<ExternalReference> externalReference;
|
||||
|
||||
/**
|
||||
* The Instance.
|
||||
*/
|
||||
@Valid
|
||||
@NotEmpty
|
||||
private List<Instance> instance;
|
||||
|
||||
/**
|
||||
* Gets measures.
|
||||
*
|
||||
* @return the measures
|
||||
*/
|
||||
public List<Measure> getMeasures() {
|
||||
return measures;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets measures.
|
||||
*
|
||||
* @param measures the measures
|
||||
*/
|
||||
public void setMeasures(List<Measure> measures) {
|
||||
this.measures = measures;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets author.
|
||||
*
|
||||
* @return the author
|
||||
*/
|
||||
public List<Author> getAuthor() {
|
||||
return author;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets author.
|
||||
*
|
||||
* @param author the author
|
||||
*/
|
||||
public void setAuthor(List<Author> author) {
|
||||
this.author = author;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets resulttype.
|
||||
*
|
||||
* @return the resulttype
|
||||
*/
|
||||
public Qualifier getResulttype() {
|
||||
return resulttype;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets resulttype.
|
||||
*
|
||||
* @param resulttype the resulttype
|
||||
*/
|
||||
public void setResulttype(Qualifier resulttype) {
|
||||
this.resulttype = resulttype;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets language.
|
||||
*
|
||||
* @return the language
|
||||
*/
|
||||
public Qualifier getLanguage() {
|
||||
return language;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets language.
|
||||
*
|
||||
* @param language the language
|
||||
*/
|
||||
public void setLanguage(Qualifier language) {
|
||||
this.language = language;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets country.
|
||||
*
|
||||
* @return the country
|
||||
*/
|
||||
public List<Country> getCountry() {
|
||||
return country;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets country.
|
||||
*
|
||||
* @param country the country
|
||||
*/
|
||||
public void setCountry(List<Country> country) {
|
||||
this.country = country;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets subject.
|
||||
*
|
||||
* @return the subject
|
||||
*/
|
||||
public List<StructuredProperty> getSubject() {
|
||||
return subject;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets subject.
|
||||
*
|
||||
* @param subject the subject
|
||||
*/
|
||||
public void setSubject(List<StructuredProperty> subject) {
|
||||
this.subject = subject;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets title.
|
||||
*
|
||||
* @return the title
|
||||
*/
|
||||
public List<StructuredProperty> getTitle() {
|
||||
return title;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets title.
|
||||
*
|
||||
* @param title the title
|
||||
*/
|
||||
public void setTitle(List<StructuredProperty> title) {
|
||||
this.title = title;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets relevantdate.
|
||||
*
|
||||
* @return the relevantdate
|
||||
*/
|
||||
public List<StructuredProperty> getRelevantdate() {
|
||||
return relevantdate;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets relevantdate.
|
||||
*
|
||||
* @param relevantdate the relevantdate
|
||||
*/
|
||||
public void setRelevantdate(List<StructuredProperty> relevantdate) {
|
||||
this.relevantdate = relevantdate;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets description.
|
||||
*
|
||||
* @return the description
|
||||
*/
|
||||
public List<Field<String>> getDescription() {
|
||||
return description;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets description.
|
||||
*
|
||||
* @param description the description
|
||||
*/
|
||||
public void setDescription(List<Field<String>> description) {
|
||||
this.description = description;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets dateofacceptance.
|
||||
*
|
||||
* @return the dateofacceptance
|
||||
*/
|
||||
public Field<String> getDateofacceptance() {
|
||||
return dateofacceptance;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets dateofacceptance.
|
||||
*
|
||||
* @param dateofacceptance the dateofacceptance
|
||||
*/
|
||||
public void setDateofacceptance(Field<String> dateofacceptance) {
|
||||
this.dateofacceptance = dateofacceptance;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets publisher.
|
||||
*
|
||||
* @return the publisher
|
||||
*/
|
||||
public Field<String> getPublisher() {
|
||||
return publisher;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets publisher.
|
||||
*
|
||||
* @param publisher the publisher
|
||||
*/
|
||||
public void setPublisher(Field<String> publisher) {
|
||||
this.publisher = publisher;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets embargoenddate.
|
||||
*
|
||||
* @return the embargoenddate
|
||||
*/
|
||||
public Field<String> getEmbargoenddate() {
|
||||
return embargoenddate;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets embargoenddate.
|
||||
*
|
||||
* @param embargoenddate the embargoenddate
|
||||
*/
|
||||
public void setEmbargoenddate(Field<String> embargoenddate) {
|
||||
this.embargoenddate = embargoenddate;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets source.
|
||||
*
|
||||
* @return the source
|
||||
*/
|
||||
public List<Field<String>> getSource() {
|
||||
return source;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets source.
|
||||
*
|
||||
* @param source the source
|
||||
*/
|
||||
public void setSource(List<Field<String>> source) {
|
||||
this.source = source;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets fulltext.
|
||||
*
|
||||
* @return the fulltext
|
||||
*/
|
||||
public List<Field<String>> getFulltext() {
|
||||
return fulltext;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets fulltext.
|
||||
*
|
||||
* @param fulltext the fulltext
|
||||
*/
|
||||
public void setFulltext(List<Field<String>> fulltext) {
|
||||
this.fulltext = fulltext;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets format.
|
||||
*
|
||||
* @return the format
|
||||
*/
|
||||
public List<Field<String>> getFormat() {
|
||||
return format;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets format.
|
||||
*
|
||||
* @param format the format
|
||||
*/
|
||||
public void setFormat(List<Field<String>> format) {
|
||||
this.format = format;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets contributor.
|
||||
*
|
||||
* @return the contributor
|
||||
*/
|
||||
public List<Field<String>> getContributor() {
|
||||
return contributor;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets contributor.
|
||||
*
|
||||
* @param contributor the contributor
|
||||
*/
|
||||
public void setContributor(List<Field<String>> contributor) {
|
||||
this.contributor = contributor;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets resourcetype.
|
||||
*
|
||||
* @return the resourcetype
|
||||
*/
|
||||
public Qualifier getResourcetype() {
|
||||
return resourcetype;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets resourcetype.
|
||||
*
|
||||
* @param resourcetype the resourcetype
|
||||
*/
|
||||
public void setResourcetype(Qualifier resourcetype) {
|
||||
this.resourcetype = resourcetype;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets coverage.
|
||||
*
|
||||
* @return the coverage
|
||||
*/
|
||||
public List<Field<String>> getCoverage() {
|
||||
return coverage;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets coverage.
|
||||
*
|
||||
* @param coverage the coverage
|
||||
*/
|
||||
public void setCoverage(List<Field<String>> coverage) {
|
||||
this.coverage = coverage;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets bestaccessright.
|
||||
*
|
||||
* @return the bestaccessright
|
||||
*/
|
||||
public Qualifier getBestaccessright() {
|
||||
return bestaccessright;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets bestaccessright.
|
||||
*
|
||||
* @param bestaccessright the bestaccessright
|
||||
*/
|
||||
public void setBestaccessright(Qualifier bestaccessright) {
|
||||
this.bestaccessright = bestaccessright;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets context.
|
||||
*
|
||||
* @return the context
|
||||
*/
|
||||
public List<Context> getContext() {
|
||||
return context;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets context.
|
||||
*
|
||||
* @param context the context
|
||||
*/
|
||||
public void setContext(List<Context> context) {
|
||||
this.context = context;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets external reference.
|
||||
*
|
||||
* @return the external reference
|
||||
*/
|
||||
public List<ExternalReference> getExternalReference() {
|
||||
return externalReference;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets external reference.
|
||||
*
|
||||
* @param externalReference the external reference
|
||||
*/
|
||||
public void setExternalReference(List<ExternalReference> externalReference) {
|
||||
this.externalReference = externalReference;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets instance.
|
||||
*
|
||||
* @return the instance
|
||||
*/
|
||||
public List<Instance> getInstance() {
|
||||
return instance;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets instance.
|
||||
*
|
||||
* @param instance the instance
|
||||
*/
|
||||
public void setInstance(List<Instance> instance) {
|
||||
this.instance = instance;
|
||||
}
|
||||
|
||||
|
||||
private static boolean isAnEnrichment(OafEntity e) {
|
||||
/**
|
||||
* Is an enrichment boolean.
|
||||
*
|
||||
* @param e the e
|
||||
* @return the boolean
|
||||
*/
|
||||
public static boolean isAnEnrichment(OafEntity e) {
|
||||
return e.getDataInfo()!= null &&
|
||||
e.getDataInfo().getProvenanceaction()!= null
|
||||
&& ModelConstants.PROVENANCE_ENRICH.equalsIgnoreCase(e.getDataInfo().getProvenanceaction().getClassid());
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Normalize pid string.
|
||||
*
|
||||
* @param pid the pid
|
||||
* @return the string
|
||||
*/
|
||||
private static String extractKeyFromPid(final StructuredProperty pid) {
|
||||
if (pid == null)
|
||||
return null;
|
||||
final StructuredProperty normalizedPid = CleaningFunctions.normalizePidValue(pid);
|
||||
|
||||
return String.format("%s::%s", normalizedPid.getQualifier().getClassid(), normalizedPid.getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Valid pid boolean.
|
||||
*
|
||||
* @param p the p
|
||||
* @return the boolean
|
||||
*/
|
||||
private static boolean validPid(final StructuredProperty p) {
|
||||
return p.getValue()!= null && p.getQualifier()!= null && p.getQualifier().getClassid()!=null;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* This method converts the list of instance enrichments
|
||||
* into a Map where the key is the normalized identifier
|
||||
* and the value is the instance itself
|
||||
*
|
||||
* @param ri the list of enrichment instances
|
||||
* @return the result map
|
||||
*/
|
||||
public static Map<String, Instance> toInstanceMap(final List<Instance> ri) {
|
||||
|
||||
|
||||
return ri
|
||||
.stream()
|
||||
.filter(i -> i.getPid() != null || i.getAlternateIdentifier() != null)
|
||||
.flatMap(i -> {
|
||||
final List<Pair<String, Instance>> result = new ArrayList<>();
|
||||
if (i.getPid() != null)
|
||||
i.getPid().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
|
||||
if (i.getAlternateIdentifier() != null)
|
||||
i.getAlternateIdentifier().stream().filter(Result::validPid).forEach(p -> result.add(new ImmutablePair<>(extractKeyFromPid(p), i)));
|
||||
return result.stream();
|
||||
}).collect(Collectors.toMap(
|
||||
Pair::getLeft,
|
||||
Pair::getRight,
|
||||
(a, b) -> a
|
||||
));
|
||||
}
|
||||
|
||||
/**
|
||||
* This utility method finds the list of enrichment instances
|
||||
* that match one or more PIDs in the input list
|
||||
*
|
||||
* @param pids the list of PIDs
|
||||
* @param enrichments the List of enrichment instances having the same pid
|
||||
* @return the list
|
||||
*/
|
||||
private static List<Instance> findEnrichmentsByPID(final List<StructuredProperty> pids, final Map<String,Instance> enrichments) {
|
||||
if (pids == null || enrichments == null)
|
||||
return null;
|
||||
return pids
|
||||
.stream()
|
||||
.map(Result::extractKeyFromPid)
|
||||
.map(enrichments::get)
|
||||
.filter(Objects::nonNull)
|
||||
.collect(Collectors.toList());
|
||||
}
|
||||
|
||||
/**
|
||||
* This method apply enrichment on a single instance
|
||||
* The enrichment consists of replacing values on
|
||||
* single attribute only if in the current instance is missing
|
||||
* The only repeatable field enriched is measures
|
||||
*
|
||||
* @param currentInstance the current instance
|
||||
* @param enrichment the enrichment instance
|
||||
*/
|
||||
private static void applyEnrichment(final Instance currentInstance, final Instance enrichment) {
|
||||
if (currentInstance == null || enrichment == null)
|
||||
return;
|
||||
|
||||
//ENRICH accessright
|
||||
if (enrichment.getAccessright()!=null && currentInstance.getAccessright() == null)
|
||||
currentInstance.setAccessright(enrichment.getAccessright());
|
||||
|
||||
//ENRICH license
|
||||
if (enrichment.getLicense()!=null && currentInstance.getLicense() == null)
|
||||
currentInstance.setLicense(enrichment.getLicense());
|
||||
|
||||
//ENRICH instanceType
|
||||
if (enrichment.getInstancetype()!=null && currentInstance.getInstancetype() == null)
|
||||
currentInstance.setInstancetype(enrichment.getInstancetype());
|
||||
|
||||
//ENRICH hostedby
|
||||
if (enrichment.getHostedby()!=null && currentInstance.getHostedby() == null)
|
||||
currentInstance.setHostedby(enrichment.getHostedby());
|
||||
|
||||
//ENRICH distributionlocation
|
||||
if (enrichment.getDistributionlocation()!=null && currentInstance.getDistributionlocation() == null)
|
||||
currentInstance.setDistributionlocation(enrichment.getDistributionlocation());
|
||||
|
||||
//ENRICH collectedfrom
|
||||
if (enrichment.getCollectedfrom()!=null && currentInstance.getCollectedfrom() == null)
|
||||
currentInstance.setCollectedfrom(enrichment.getCollectedfrom());
|
||||
|
||||
//ENRICH dateofacceptance
|
||||
if (enrichment.getDateofacceptance()!=null && currentInstance.getDateofacceptance() == null)
|
||||
currentInstance.setDateofacceptance(enrichment.getDateofacceptance());
|
||||
|
||||
//ENRICH processingchargeamount
|
||||
if (enrichment.getProcessingchargeamount()!=null && currentInstance.getProcessingchargeamount() == null)
|
||||
currentInstance.setProcessingchargeamount(enrichment.getProcessingchargeamount());
|
||||
|
||||
//ENRICH refereed
|
||||
if (enrichment.getRefereed()!=null && currentInstance.getRefereed() == null)
|
||||
currentInstance.setRefereed(enrichment.getRefereed());
|
||||
|
||||
//ENRICH measures
|
||||
if (enrichment.getMeasures()!=null)
|
||||
if (currentInstance.getMeasures() == null)
|
||||
currentInstance.setMeasures(enrichment.getMeasures());
|
||||
else
|
||||
enrichment.getMeasures().forEach(currentInstance.getMeasures()::add);
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* This main method apply the enrichment of the instances
|
||||
*
|
||||
* @param toEnrichInstances the instances that could be enriched
|
||||
* @param enrichmentInstances the enrichment instances
|
||||
* @return list of instances possibly enriched
|
||||
*/
|
||||
private static List<Instance> enrichInstances(final List<Instance> toEnrichInstances,final List<Instance> enrichmentInstances) {
|
||||
final List<Instance> enrichmentResult = new ArrayList<>();
|
||||
|
||||
if (toEnrichInstances == null) {
|
||||
return enrichmentResult;
|
||||
}
|
||||
if (enrichmentInstances == null) {
|
||||
return enrichmentResult;
|
||||
}
|
||||
Map<String, Instance> ri = toInstanceMap(enrichmentInstances);
|
||||
|
||||
toEnrichInstances.forEach(i -> {
|
||||
final List<Instance> e = findEnrichmentsByPID(i.getPid(), ri);
|
||||
if (e!= null && e.size()> 0) {
|
||||
e.forEach(enr -> applyEnrichment(i, enr));
|
||||
} else {
|
||||
final List<Instance> a = findEnrichmentsByPID(i.getAlternateIdentifier(), ri);
|
||||
if (a!= null && a.size()> 0) {
|
||||
a.forEach(enr -> applyEnrichment(i, enr));
|
||||
}
|
||||
}
|
||||
enrichmentResult.add(i);
|
||||
});
|
||||
return enrichmentResult;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void mergeFrom(OafEntity e) {
|
||||
super.mergeFrom(e);
|
||||
|
|
@ -261,7 +723,15 @@ public class Result extends OafEntity implements Serializable {
|
|||
|
||||
measures = mergeLists(measures, r.getMeasures());
|
||||
|
||||
instance = mergeLists(instance, r.getInstance());
|
||||
if( !isAnEnrichment(this) && !isAnEnrichment(e))
|
||||
instance = mergeLists(instance, r.getInstance());
|
||||
else {
|
||||
final List<Instance> enrichmentInstances = isAnEnrichment(this) ? instance : r.getInstance();
|
||||
final List<Instance> enrichedInstances= isAnEnrichment(this) ? r.getInstance(): instance;
|
||||
if (isAnEnrichment(this))
|
||||
setDataInfo(e.getDataInfo());
|
||||
instance = enrichInstances(enrichedInstances,enrichmentInstances);
|
||||
}
|
||||
|
||||
if (r.getBestaccessright() != null
|
||||
&& new AccessRightComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
|
||||
|
|
@ -341,6 +811,13 @@ public class Result extends OafEntity implements Serializable {
|
|||
externalReference = mergeLists(externalReference, r.getExternalReference());
|
||||
}
|
||||
|
||||
/**
|
||||
* Longest lists list.
|
||||
*
|
||||
* @param a the a
|
||||
* @param b the b
|
||||
* @return the list
|
||||
*/
|
||||
private List<Field<String>> longestLists(List<Field<String>> a, List<Field<String>> b) {
|
||||
if (a == null || b == null)
|
||||
return a == null ? b : a;
|
||||
|
|
@ -362,6 +839,12 @@ public class Result extends OafEntity implements Serializable {
|
|||
return a.size() > b.size() ? a : b;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets main title.
|
||||
*
|
||||
* @param titles the titles
|
||||
* @return the main title
|
||||
*/
|
||||
private StructuredProperty getMainTitle(List<StructuredProperty> titles) {
|
||||
// need to check if the list of titles contains more than 1 main title? (in that case, we should chose which
|
||||
// main title select in the list)
|
||||
|
|
|
|||
|
|
@ -3,22 +3,41 @@ package eu.dnetlib.dhp.schema.oaf;
|
|||
|
||||
import static org.junit.jupiter.api.Assertions.*;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.time.format.DateTimeParseException;
|
||||
import java.util.Arrays;
|
||||
import java.util.List;
|
||||
import java.util.Objects;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
/**
|
||||
* The type Merge test.
|
||||
*/
|
||||
class MergeTest {
|
||||
|
||||
/**
|
||||
* The Oaf.
|
||||
*/
|
||||
OafEntity oaf;
|
||||
|
||||
/**
|
||||
* Sets up.
|
||||
*/
|
||||
@BeforeEach
|
||||
public void setUp() {
|
||||
oaf = new Publication();
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge lists test.
|
||||
*/
|
||||
@Test
|
||||
@SuppressWarnings("unchecked")
|
||||
void mergeListsTest() {
|
||||
|
|
@ -35,6 +54,9 @@ class MergeTest {
|
|||
System.out.println("merge result 3 = " + oaf.mergeLists(c, c));
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication collected from test.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationCollectedFromTest() {
|
||||
|
||||
|
|
@ -50,6 +72,118 @@ class MergeTest {
|
|||
assertEquals(3, a.getCollectedfrom().size());
|
||||
}
|
||||
|
||||
/**
|
||||
* Load resource result list.
|
||||
*
|
||||
* @param <T> the type parameter
|
||||
* @param path the path
|
||||
* @param clazz the clazz
|
||||
* @return the list
|
||||
* @throws Exception the exception
|
||||
*/
|
||||
private <T extends Result> List<Result> loadResourceResult(final String path, final Class<T> clazz ) throws Exception {
|
||||
final ObjectMapper mapper = new ObjectMapper();
|
||||
final InputStream str = Objects.requireNonNull(getClass().getResourceAsStream(path));
|
||||
// LOAD test publications
|
||||
return IOUtils.readLines(str).stream().map(s -> {
|
||||
try {
|
||||
return mapper.readValue(s, clazz);
|
||||
} catch (IOException e) {
|
||||
return null;
|
||||
}
|
||||
}).filter(Objects::nonNull).collect(Collectors.toList());
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Apply to any test list result the same pid of the enrichment instance
|
||||
*
|
||||
* @param source the source
|
||||
* @param enrichment the enrichment
|
||||
* @param overrideAlternateIdentifier the override alternate identifier
|
||||
*/
|
||||
private void updatePidIntoPublicationInstance(final List<Result> source, final List<Result>enrichment, final boolean overrideAlternateIdentifier) {
|
||||
for(int i = 0 ; i< source.size(); i++) {
|
||||
final Result currentPub = source.get(i);
|
||||
final Result currentEnrichment = enrichment.get(i);
|
||||
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
|
||||
if (overrideAlternateIdentifier)
|
||||
currentInstance.setAlternateIdentifier(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
|
||||
else
|
||||
currentInstance.setPid(Objects.requireNonNull(currentEnrichment.getInstance()).get(0).getPid());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void applyAndVerifyEnrichment(final List<Result> l1, final List<Result> l2) {
|
||||
// Apply Merge and verify that enrichments works
|
||||
for(int i = 0 ; i< l1.size(); i++) {
|
||||
final Result currentPub = l2.get(i);
|
||||
final Result currentEnrichment = l1.get(i);
|
||||
currentPub.mergeFrom(currentEnrichment);
|
||||
assertEquals(1, currentPub.getInstance().size());
|
||||
final Instance currentInstance = Objects.requireNonNull(currentPub.getInstance()).get(0);
|
||||
assertNotNull(currentInstance.getMeasures());
|
||||
assertNotNull(currentPub.getTitle());
|
||||
assertFalse(Result.isAnEnrichment(currentPub));
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
/**
|
||||
* Test enrichment function.
|
||||
*
|
||||
* @throws Exception the exception
|
||||
*/
|
||||
@Test
|
||||
void testEnrichment() throws Exception {
|
||||
|
||||
|
||||
// 1 TEST UPDATING PID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
|
||||
// LOAD test publications
|
||||
List<Result> publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
|
||||
// Assert that each publication has only one instance and inside that all the measure field is empty
|
||||
publications.forEach(p -> {
|
||||
assertEquals(1, p.getInstance().size());
|
||||
final Instance currentInstance = Objects.requireNonNull(p.getInstance()).get(0);
|
||||
assertNull(currentInstance.getMeasures());
|
||||
});
|
||||
|
||||
// LOAD test enrichments
|
||||
List<Result> enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
|
||||
|
||||
updatePidIntoPublicationInstance(publications, enrichment, false);
|
||||
applyAndVerifyEnrichment(publications, enrichment);
|
||||
|
||||
|
||||
// 2 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE CURRENT PUBLICATION WITH ENRICHMENT
|
||||
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
|
||||
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
|
||||
updatePidIntoPublicationInstance(publications, enrichment, true);
|
||||
applyAndVerifyEnrichment(publications, enrichment);
|
||||
|
||||
|
||||
// 3 TEST UPDATING PID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
|
||||
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
|
||||
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
|
||||
updatePidIntoPublicationInstance(publications, enrichment, false);
|
||||
applyAndVerifyEnrichment( enrichment, publications);
|
||||
|
||||
// 4 TEST UPDATING ALTERNATE ID INSTANCE AND MERGE ENRICHMENT WITH CURRENT PUBLICATION
|
||||
publications = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/publications.json", Publication.class);
|
||||
enrichment = loadResourceResult("/eu/dnetlib/dhp/schema/oaf/utils/enrichment.json", Result.class);
|
||||
updatePidIntoPublicationInstance(publications, enrichment, true);
|
||||
applyAndVerifyEnrichment( enrichment, publications);
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test both present.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_bothPresent() {
|
||||
|
||||
|
|
@ -65,6 +199,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test both present 1.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_bothPresent_1() {
|
||||
|
||||
|
|
@ -80,6 +217,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test both present 2.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_bothPresent_2() {
|
||||
|
||||
|
|
@ -95,6 +235,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-18", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test left missing.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_leftMissing() {
|
||||
|
||||
|
|
@ -109,6 +252,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test left missing 1.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_leftMissing_1() {
|
||||
|
||||
|
|
@ -123,6 +269,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test left missing 2.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_leftMissing_2() {
|
||||
|
||||
|
|
@ -137,6 +286,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test right missing.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_rightMissing() {
|
||||
|
||||
|
|
@ -151,6 +303,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test right missing 1.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_rightMissing_1() {
|
||||
|
||||
|
|
@ -165,6 +320,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication date of acceptance test right missing 2.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationDateOfAcceptanceTest_rightMissing_2() {
|
||||
|
||||
|
|
@ -179,6 +337,9 @@ class MergeTest {
|
|||
assertEquals("2021-06-19", a.getDateofacceptance().getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge publication subject test.
|
||||
*/
|
||||
@Test
|
||||
void mergePublicationSubjectTest() {
|
||||
|
||||
|
|
@ -194,6 +355,9 @@ class MergeTest {
|
|||
assertEquals(3, a.getSubject().size());
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge relation test.
|
||||
*/
|
||||
@Test
|
||||
void mergeRelationTest() {
|
||||
|
||||
|
|
@ -235,6 +399,9 @@ class MergeTest {
|
|||
|
||||
}
|
||||
|
||||
/**
|
||||
* Merge relation test parse exception.
|
||||
*/
|
||||
@Test
|
||||
void mergeRelationTestParseException() {
|
||||
assertThrows(DateTimeParseException.class, () -> {
|
||||
|
|
@ -244,6 +411,13 @@ class MergeTest {
|
|||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Create rel relation.
|
||||
*
|
||||
* @param validated the validated
|
||||
* @param validationDate the validation date
|
||||
* @return the relation
|
||||
*/
|
||||
private Relation createRel(Boolean validated, String validationDate) {
|
||||
Relation rel = new Relation();
|
||||
rel.setSource("1");
|
||||
|
|
@ -256,6 +430,13 @@ class MergeTest {
|
|||
return rel;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets kv.
|
||||
*
|
||||
* @param key the key
|
||||
* @param value the value
|
||||
* @return the kv
|
||||
*/
|
||||
private KeyValue setKV(final String key, final String value) {
|
||||
|
||||
KeyValue k = new KeyValue();
|
||||
|
|
@ -266,6 +447,14 @@ class MergeTest {
|
|||
return k;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets sp.
|
||||
*
|
||||
* @param value the value
|
||||
* @param schema the schema
|
||||
* @param classname the classname
|
||||
* @return the sp
|
||||
*/
|
||||
private StructuredProperty setSP(
|
||||
final String value, final String schema, final String classname) {
|
||||
StructuredProperty s = new StructuredProperty();
|
||||
|
|
@ -279,24 +468,48 @@ class MergeTest {
|
|||
return s;
|
||||
}
|
||||
|
||||
/**
|
||||
* Field field.
|
||||
*
|
||||
* @param <T> the type parameter
|
||||
* @param value the value
|
||||
* @return the field
|
||||
*/
|
||||
private <T> Field<T> field(T value) {
|
||||
Field<T> f = new Field();
|
||||
f.setValue(value);
|
||||
return f;
|
||||
}
|
||||
|
||||
/**
|
||||
* Publication publication.
|
||||
*
|
||||
* @return the publication
|
||||
*/
|
||||
private Publication publication() {
|
||||
Publication p = new Publication();
|
||||
p.setDataInfo(df("0.9"));
|
||||
return p;
|
||||
}
|
||||
|
||||
/**
|
||||
* Publication publication.
|
||||
*
|
||||
* @param trust the trust
|
||||
* @return the publication
|
||||
*/
|
||||
private Publication publication(String trust) {
|
||||
Publication p = new Publication();
|
||||
p.setDataInfo(df(trust));
|
||||
return p;
|
||||
}
|
||||
|
||||
/**
|
||||
* Df data info.
|
||||
*
|
||||
* @param trust the trust
|
||||
* @return the data info
|
||||
*/
|
||||
private DataInfo df(String trust) {
|
||||
DataInfo d = new DataInfo();
|
||||
d.setTrust(trust);
|
||||
|
|
|
|||
|
|
@ -0,0 +1,12 @@
|
|||
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|
||||
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Reference in New Issue