784 lines
26 KiB
Java
784 lines
26 KiB
Java
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package eu.dnetlib.dhp.oa.graph.dump.skgif;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.List;
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import java.util.Optional;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.google.gson.Gson;
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import eu.dnetlib.dhp.oa.graph.dump.Constants;
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import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
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import eu.dnetlib.dhp.oa.graph.dump.community.SparkDumpCommunityProducts;
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import eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob;
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import eu.dnetlib.dhp.oa.model.Instance;
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import eu.dnetlib.dhp.oa.model.OpenAccessRoute;
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import eu.dnetlib.dhp.oa.model.Score;
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import eu.dnetlib.dhp.oa.model.community.CommunityResult;
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import eu.dnetlib.dhp.oa.model.graph.GraphResult;
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import eu.dnetlib.dhp.schema.common.ModelConstants;
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import eu.dnetlib.dhp.skgif.EmitFromResults;
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import eu.dnetlib.dhp.skgif.beans.EmitPerManifestation;
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import eu.dnetlib.dhp.skgif.model.Manifestation;
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import eu.dnetlib.dhp.skgif.model.Persons;
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import eu.dnetlib.dhp.skgif.model.ResultTopic;
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//@Disabled
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public class EmitFromResultJobTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory.getLogger(EmitFromResultJobTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(EmitFromResultJobTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(EmitFromResultJobTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(EmitFromResultJobTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void testEmitFromResult() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
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.getPath();
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EmitFromResults
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-outputPath", workingDir.toString() + "/result/",
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"-workingDir", workingDir.toString() + "/"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Persons> persons = sc
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.textFile(workingDir.toString() + "/result/Persons")
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.map(item -> OBJECT_MAPPER.readValue(item, Persons.class));
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JavaRDD<ResultTopic> topics = sc
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.textFile(workingDir.toString() + "/result/Topic")
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.map(item -> OBJECT_MAPPER.readValue(item, ResultTopic.class));
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JavaRDD<EmitPerManifestation> manifestation = sc
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.textFile(workingDir.toString() + "/result/Persons")
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.map(item -> OBJECT_MAPPER.readValue(item, EmitPerManifestation.class));
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org.apache.spark.sql.Dataset<Persons> personsDataset = spark
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.createDataset(persons.rdd(), Encoders.bean(Persons.class));
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personsDataset.show(false);
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}
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@Test
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public void testDatasetDump() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpEntitiesJob
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'dataset'").count());
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// the common fields in the result have been already checked. Now checking only
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// community specific fields
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GraphResult gr = verificationDataset.first();
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Assertions.assertEquals(2, gr.getGeolocation().size());
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Assertions.assertEquals(2, gr.getGeolocation().stream().filter(gl -> gl.getBox().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("")).count());
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Assertions
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.assertEquals(
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1,
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gr
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.getGeolocation()
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.stream()
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.filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada"))
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.count());
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Assertions
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.assertEquals(
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1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
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Assertions
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.assertEquals(
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1,
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gr
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.getGeolocation()
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.stream()
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.filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals(""))
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.count());
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Assertions
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.assertEquals(
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1,
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gr
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.getGeolocation()
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.stream()
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.filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals(""))
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.count());
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Assertions.assertEquals("1024Gb", gr.getSize());
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Assertions.assertEquals("1.01", gr.getVersion());
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Assertions.assertEquals(null, gr.getContainer());
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Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
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Assertions.assertEquals(null, gr.getProgrammingLanguage());
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Assertions.assertEquals(null, gr.getDocumentationUrl());
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Assertions.assertEquals(null, gr.getContactperson());
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Assertions.assertEquals(null, gr.getContactgroup());
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Assertions.assertEquals(null, gr.getTool());
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}
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@Test
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public void testSoftwareDump() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpEntitiesJob
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'software'").count());
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GraphResult gr = verificationDataset.first();
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Assertions.assertEquals(2, gr.getDocumentationUrl().size());
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Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_1"));
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Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_2"));
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Assertions.assertEquals("code_repo", gr.getCodeRepositoryUrl());
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Assertions.assertEquals("perl", gr.getProgrammingLanguage());
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Assertions.assertEquals(null, gr.getContainer());
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Assertions.assertEquals(null, gr.getContactperson());
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Assertions.assertEquals(null, gr.getContactgroup());
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Assertions.assertEquals(null, gr.getTool());
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Assertions.assertEquals(null, gr.getGeolocation());
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Assertions.assertEquals(null, gr.getSize());
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Assertions.assertEquals(null, gr.getVersion());
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}
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@Test
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public void testOrpDump() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpEntitiesJob
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'other'").count());
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GraphResult gr = verificationDataset.first();
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Assertions.assertEquals(2, gr.getContactperson().size());
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Assertions.assertTrue(gr.getContactperson().contains(("contact_person1")));
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Assertions.assertTrue(gr.getContactperson().contains(("contact_person2")));
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Assertions.assertEquals(1, gr.getContactgroup().size());
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Assertions.assertTrue(gr.getContactgroup().contains(("contact_group")));
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Assertions.assertEquals(2, gr.getTool().size());
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Assertions.assertTrue(gr.getTool().contains("tool1"));
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Assertions.assertTrue(gr.getTool().contains("tool2"));
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Assertions.assertEquals(null, gr.getContainer());
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Assertions.assertEquals(null, gr.getDocumentationUrl());
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Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
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Assertions.assertEquals(null, gr.getProgrammingLanguage());
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Assertions.assertEquals(null, gr.getGeolocation());
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Assertions.assertEquals(null, gr.getSize());
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Assertions.assertEquals(null, gr.getVersion());
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}
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@Test
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public void testPublicationDumpCommunity() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpCommunityProducts
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
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// the common fields in the result have been already checked. Now checking only
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// community specific fields
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CommunityResult cr = verificationDataset.first();
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Assertions.assertEquals(1, cr.getContext().size());
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Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
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Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
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Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
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Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
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Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
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Assertions.assertEquals(1, cr.getCollectedfrom().size());
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Assertions
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.assertEquals("openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
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Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
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Assertions.assertEquals(1, cr.getInstance().size());
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Assertions
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.assertEquals(
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"openaire____::fdc7e0400d8c1634cdaf8051dbae23db",
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cr.getInstance().get(0).getCollectedfrom().getKey());
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Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
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Assertions
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.assertEquals(
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"openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
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Assertions.assertEquals("One Ecosystem", cr.getInstance().get(0).getHostedby().getValue());
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}
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@Test
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public void testDataset() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpCommunityProducts
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(90, verificationDataset.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
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.count());
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Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
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Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
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}
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@Test
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public void testDataset2All() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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SparkDumpEntitiesJob
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", sourcePath,
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"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
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"-outputPath", workingDir.toString() + "/result",
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"-communityMapPath", communityMapPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(5, verificationDataset.count());
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}
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|
@Test
|
|
public void testDataset2Communities() throws Exception {
|
|
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpCommunityProducts
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<CommunityResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
|
|
|
Assertions.assertEquals(0, verificationDataset.count());
|
|
|
|
}
|
|
|
|
@Test
|
|
public void testPublication() throws Exception {
|
|
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpCommunityProducts
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<CommunityResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
|
|
|
Assertions.assertEquals(74, verificationDataset.count());
|
|
verificationDataset.show(false);
|
|
|
|
Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
|
|
|
|
}
|
|
|
|
@Test
|
|
public void testSoftware() throws Exception {
|
|
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software.json")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpCommunityProducts
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<CommunityResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
|
|
|
Assertions.assertEquals(6, verificationDataset.count());
|
|
|
|
Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
|
|
|
|
}
|
|
|
|
@Test
|
|
public void testORP() throws Exception {
|
|
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp.json")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpCommunityProducts
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<CommunityResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
|
|
|
Assertions.assertEquals(3, verificationDataset.count());
|
|
|
|
Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
|
|
|
|
}
|
|
|
|
@Test
|
|
public void testRecord() throws Exception {
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpCommunityProducts
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<CommunityResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
|
|
|
Assertions.assertEquals(2, verificationDataset.count());
|
|
verificationDataset.show(false);
|
|
|
|
Assertions.assertEquals(2, verificationDataset.filter("type = 'publication'").count());
|
|
|
|
}
|
|
|
|
@Test
|
|
public void testArticlePCA() throws Exception {
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpEntitiesJob
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<GraphResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
|
|
|
|
org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
|
|
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
|
|
|
|
Assertions.assertEquals(23, verificationDataset.count());
|
|
|
|
Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
|
|
|
|
verificationDataset.createOrReplaceTempView("check");
|
|
|
|
org.apache.spark.sql.Dataset<Row> temp = spark
|
|
.sql(
|
|
"select id " +
|
|
"from check " +
|
|
"lateral view explode (instance) i as inst " +
|
|
"where inst.articleprocessingcharge is not null");
|
|
|
|
Assertions.assertTrue(temp.count() == 2);
|
|
|
|
Assertions.assertTrue(temp.filter("id = 'datacite____::05c611fdfc93d7a2a703d1324e28104a'").count() == 1);
|
|
|
|
Assertions.assertTrue(temp.filter("id = 'dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
|
|
|
|
temp = spark
|
|
.sql(
|
|
"select id, inst.articleprocessingcharge.amount, inst.articleprocessingcharge.currency " +
|
|
"from check " +
|
|
"lateral view explode (instance) i as inst " +
|
|
"where inst.articleprocessingcharge is not null");
|
|
|
|
Assertions
|
|
.assertEquals(
|
|
"3131.64",
|
|
temp
|
|
.filter("id = 'datacite____::05c611fdfc93d7a2a703d1324e28104a'")
|
|
.collectAsList()
|
|
.get(0)
|
|
.getString(1));
|
|
Assertions
|
|
.assertEquals(
|
|
"EUR",
|
|
temp
|
|
.filter("id = 'datacite____::05c611fdfc93d7a2a703d1324e28104a'")
|
|
.collectAsList()
|
|
.get(0)
|
|
.getString(2));
|
|
|
|
Assertions
|
|
.assertEquals(
|
|
"2578.35",
|
|
temp
|
|
.filter("id = 'dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'")
|
|
.collectAsList()
|
|
.get(0)
|
|
.getString(1));
|
|
Assertions
|
|
.assertEquals(
|
|
"EUR",
|
|
temp
|
|
.filter("id = 'dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'")
|
|
.collectAsList()
|
|
.get(0)
|
|
.getString(2));
|
|
}
|
|
|
|
@Test
|
|
public void testresultNotDumped() throws Exception {
|
|
final String sourcePath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/resultNotDumped.json")
|
|
.getPath();
|
|
|
|
final String communityMapPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
|
.getPath();
|
|
|
|
SparkDumpEntitiesJob
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-sourcePath", sourcePath,
|
|
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
|
|
"-outputPath", workingDir.toString() + "/result",
|
|
"-communityMapPath", communityMapPath
|
|
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<GraphResult> tmp = sc
|
|
.textFile(workingDir.toString() + "/result")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
|
|
|
|
Assertions.assertEquals(0, tmp.count());
|
|
|
|
}
|
|
|
|
}
|