package eu.dnetlib.dhp.oa.graph.dump.community; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.*; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.commons.lang.StringUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Constants; import eu.dnetlib.dhp.oa.graph.dump.ResultMapper; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.oa.graph.dump.exceptions.CardinalityTooHighException; import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException; import eu.dnetlib.dhp.oa.model.community.CommunityResult; import eu.dnetlib.dhp.schema.common.ModelSupport; import eu.dnetlib.dhp.schema.oaf.Context; import eu.dnetlib.dhp.schema.oaf.DataInfo; import eu.dnetlib.dhp.schema.oaf.OafEntity; import eu.dnetlib.dhp.schema.oaf.Result; /** * Spark action to trigger the dump of results associated to research community - reseach initiative/infrasctructure The * actual dump if performed via the class DumpProducts that is used also for the entire graph dump */ public class SparkDumpCommunityProducts implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkDumpCommunityProducts.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkDumpCommunityProducts.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); String communityMapPath = Optional .ofNullable(parser.get("communityMapPath")) .orElse(null); String dumpType = Optional .ofNullable(parser.get("dumpType")) .orElse(null); Class inputClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); resultDump( spark, inputPath, outputPath, communityMapPath, inputClazz, dumpType); }); } public static void resultDump( SparkSession spark, String inputPath, String outputPath, String communityMapPath, Class inputClazz, String dumpType) { CommunityMap communityMap = null; if (!StringUtils.isEmpty(communityMapPath)) communityMap = Utils.getCommunityMap(spark, communityMapPath); CommunityMap finalCommunityMap = communityMap; Utils .readPath(spark, inputPath, inputClazz) .map( (MapFunction) value -> execMap(value, finalCommunityMap, dumpType), Encoders.bean(CommunityResult.class)) .filter((FilterFunction) value -> value != null) .map( (MapFunction) r -> new ObjectMapper().writeValueAsString(r), Encoders.STRING()) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .text(outputPath); } private static O execMap(I value, CommunityMap communityMap, String dumpType) throws NoAvailableEntityTypeException, CardinalityTooHighException { Optional odInfo = Optional.ofNullable(value.getDataInfo()); if (Boolean.FALSE.equals(odInfo.isPresent())) { return null; } if (Boolean.TRUE.equals(odInfo.get().getDeletedbyinference()) || Boolean.TRUE.equals(odInfo.get().getInvisible())) { return null; } if (StringUtils.isEmpty(dumpType)) { Set communities = communityMap.keySet(); Optional> inputContext = Optional .ofNullable(((eu.dnetlib.dhp.schema.oaf.Result) value).getContext()); if (!inputContext.isPresent()) { return null; } List toDumpFor = inputContext.get().stream().map(c -> { if (communities.contains(c.getId())) { return c.getId(); } if (c.getId().contains("::") && communities.contains(c.getId().substring(0, c.getId().indexOf("::")))) { return c.getId().substring(0, c.getId().indexOf("::")); } return null; }).filter(Objects::nonNull).collect(Collectors.toList()); if (toDumpFor.isEmpty()) { return null; } } return (O) ResultMapper.map(value, communityMap, Constants.DUMPTYPE.COMMUNITY.getType()); } }