package eu.dnetlib.dhp.oa.graph.dump; import java.io.File; import java.io.FileInputStream; import java.io.IOException; import java.io.InputStream; import java.nio.file.Files; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.*; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Disabled; import org.junit.jupiter.api.Test; import com.google.gson.Gson; import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap; import eu.dnetlib.dhp.oa.zenodoapi.MissingConceptDoiException; import eu.dnetlib.dhp.oa.zenodoapi.ZenodoAPIClient; @Disabled public class ZenodoUploadTest { private static String workingDir; private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions"; private final String ACCESS_TOKEN = "OzzOsyucEIHxCEfhlpsMo3myEiwpCza3trCRL7ddfGTAK9xXkIP2MbXd6Vg4"; @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(UpdateProjectInfoTest.class.getSimpleName()) .toString(); } @Test void testNewDeposition() throws IOException { CommunityMap communityMap = new CommunityMap(); communityMap.put("ni", "Neuroinformatics"); communityMap.put("dh-ch", "Digital Humanities and Cultural Heritage"); LocalFileSystem fs = FileSystem.getLocal(new Configuration()); fs .copyFromLocalFile( false, new Path(getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni") .getPath()), new Path(workingDir + "/zenodo/ni/ni")); fs .copyFromLocalFile( false, new Path(getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/dh-ch") .getPath()), new Path(workingDir + "/zenodo/dh-ch/dh-ch")); ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING, ACCESS_TOKEN); client.newDeposition(); // the second boolean parameter here sets the recursion to true RemoteIterator fileStatusListIterator = fs .listFiles( new Path(workingDir + "/zenodo"), true); while (fileStatusListIterator.hasNext()) { LocatedFileStatus fileStatus = fileStatusListIterator.next(); String p_string = fileStatus.getPath().toString(); int index = p_string.lastIndexOf("/"); String community = p_string.substring(0, index); community = community.substring(community.lastIndexOf("/") + 1); String community_name = communityMap.get(community).replace(" ", "_"); // fs.copyToLocalFile(fileStatus.getPath(), new Path("/tmp/" + community_name)); System.out.println(community); // File f = new File("/tmp/" + community_name); FSDataInputStream inputStream = fs.open(fileStatus.getPath()); System.out.println(client.uploadIS(inputStream, community_name)); } String metadata = "{\"metadata\":{\"access_right\":\"open\",\"communities\":[{\"identifier\":\"openaire-research-graph\"}],\"creators\":[{\"affiliation\":\"CNR - ISTI\",\"name\":\"Manghi, Paolo\",\"orcid\":\"0000-0001-7291-3210\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Atzori, Claudio\",\"orcid\":\"0000-0001-9613-6639\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Bardi, Alessia\",\"orcid\":\"0000-0002-1112-1292\"},{\"affiliation\":\"ISTI - CNR\",\"name\":\"Baglioni, Miriam\",\"orcid\":\"0000-0002-2273-9004\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Shirrwagen, Jochen\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Dimitropoulos, Harry\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"La Bruzzo, Sandro\",\"orcid\":\"0000-0003-2855-1245\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Foufoulas, Ioannis\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Löhden, Aenne\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Bäcker, Amelie\",\"orcid\":\"0000-0001-6015-2063\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Mannocci, Andrea\",\"orcid\":\"0000-0002-5193-7851\"},{\"affiliation\":\"University of Warsaw\",\"name\":\"Horst, Marek\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Czerniak, Andreas\",\"orcid\":\"0000-0003-3883-4169\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kiatropoulou, Katerina\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kokogiannaki, Argiro\",\"orcid\":\"0000-0002-3880-0244\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"De Bonis, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Artini, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Ottonello, Enrico\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Lempesis, Antonis\"},{\"affiliation\":\"CERN\",\"name\":\"Ioannidis, Alexandros\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Summan, Friedrich\"}],\"description\":\"\\u003cp\\u003eThis dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE\\u003c/p\\u003e. \\u003cp\\u003eEach dataset is a zip containing a file with one json per line. Each json is compliant to the schema available at XXXX\\u003c/p\\u003e Note that the file that is offered is not a typical json file: each line contains a separate, self-contained json object. For more information please see http://jsonlines.org\",\"grants\":[{\"id\":\"777541\"},{\"id\":\"824091\"},{\"id\":\"824323\"}],\"keywords\":[\"Open Science\",\"Scholarly Communication\",\"Information Science\"],\"language\":\"eng\",\"license\":\"CC-BY-4.0\",\"title\":\"OpenAIRE Research Graph: Dumps for research communities and initiatives.\",\"upload_type\":\"dataset\",\"version\":\"1.0\"}}"; System.out.println(client.sendMretadata(metadata)); // System.out.println(client.publish()); } @Test void testNewVersion() throws Exception, MissingConceptDoiException { ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING, ACCESS_TOKEN); client.newVersion("656628"); CommunityMap communityMap = new CommunityMap(); communityMap.put("ni", "Neuroinformatics"); communityMap.put("dh-ch", "Digital Humanities and Cultural Heritage"); LocalFileSystem fs = FileSystem.getLocal(new Configuration()); fs .copyFromLocalFile( false, new Path(getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni") .getPath()), new Path(workingDir + "/zenodo/ni/ni")); fs .copyFromLocalFile( false, new Path(getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/dh-ch") .getPath()), new Path(workingDir + "/zenodo/dh-ch/dh-ch")); RemoteIterator fileStatusListIterator = fs .listFiles( new Path(workingDir + "/zenodo"), true); while (fileStatusListIterator.hasNext()) { LocatedFileStatus fileStatus = fileStatusListIterator.next(); String p_string = fileStatus.getPath().toString(); int index = p_string.lastIndexOf("/"); String community = p_string.substring(0, index); community = community.substring(community.lastIndexOf("/") + 1); String community_name = communityMap.get(community).replace(" ", "_"); // fs.copyToLocalFile(fileStatus.getPath(), new Path("/tmp/" + community_name)); System.out.println(community); // File f = new File("/tmp/" + community_name); FSDataInputStream inputStream = fs.open(fileStatus.getPath()); System.out.println(client.uploadIS(inputStream, community_name)); } // System.out.println(client.publish()); } @Test void testNewVersion2() throws Exception, MissingConceptDoiException { ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING, ACCESS_TOKEN); client.newVersion("1210237"); File file = new File("/Users/miriam.baglioni/Desktop/EOSC_DUMP/publication.tar"); // File file = new File(getClass() // .getResource("/eu/dnetlib/dhp/common/api/newVersion2") // .getPath()); InputStream is = new FileInputStream(file); Assertions.assertEquals(200, client.uploadIS3(is, "newVersion_deposition", file.length())); // Assertions.assertEquals(202, client.publish()); } @Test void readCommunityMap() throws IOException { LocalFileSystem fs = FileSystem.getLocal(new Configuration()); System.out .println( new Gson() .toJson( Utils .readCommunityMap( fs, getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json") .getPath()))); } @Test void depositBigFile() throws MissingConceptDoiException, IOException { ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING, ACCESS_TOKEN); Assertions.assertEquals(201, client.newDeposition()); File file = new File("/Users/miriam.baglioni/Desktop/EOSC_DUMP/publication.tar"); // File file = new File(getClass() // .getResource("/eu/dnetlib/dhp/common/api/newVersion2") // .getPath()); InputStream is = new FileInputStream(file); Assertions.assertEquals(200, client.uploadIS3(is, "newVersion_deposition", file.length())); // Assertions.assertEquals(202, client.publish()); } }