package eu.dnetlib.dhp.oa.graph.dump.eosc; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.eosc.model.EoscResult; import eu.dnetlib.dhp.oa.graph.dump.Constants; import eu.dnetlib.dhp.oa.graph.dump.ResultMapper; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.oa.model.graph.GraphResult; import eu.dnetlib.dhp.schema.oaf.Result; /** * @author miriam.baglioni * @Date 27/07/22 */ public class SelectEoscResultsJobStep1 implements Serializable { private static final Logger log = LoggerFactory.getLogger(SelectEoscResultsJobStep1.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SelectEoscResultsJobStep1.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/eosc_select_result_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); Class inputClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); selectEoscResults(spark, inputPath, outputPath, inputClazz); }); } private static void selectEoscResults(SparkSession spark, String inputPath, String outputPath, Class inputClazz) { Utils .readPath(spark, inputPath, inputClazz) .filter( (FilterFunction) r -> !r.getDataInfo().getDeletedbyinference() && !r.getDataInfo().getInvisible() && r.getContext().stream().anyMatch(c -> c.getId().equals("eosc"))) .map( (MapFunction) r -> (EoscResult) ResultMapper .map(r, null, Constants.DUMPTYPE.EOSC.getType()), Encoders.bean(EoscResult.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } }