package eu.dnetlib.dhp.oa.graph.dump.funderresults; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.List; import java.util.Objects; import java.util.Optional; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FlatMapFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.*; import org.jetbrains.annotations.NotNull; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.oa.model.community.CommunityResult; import eu.dnetlib.dhp.oa.model.community.Funder; import eu.dnetlib.dhp.oa.model.community.Project; /** * Splits the dumped results by funder and stores them in a folder named as the funder nsp (for all the funders, but the EC * for the EC it specifies also the fundingStream (FP7 or H2020) */ public class SparkDumpFunderResults implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkDumpFunderResults.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkDumpFunderResults.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); writeResultProjectList(spark, inputPath, outputPath); }); } private static void writeResultProjectList(SparkSession spark, String inputPath, String outputPath) { Dataset result = Utils .readPath(spark, inputPath + "/publication", CommunityResult.class) .union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class)) .union(Utils.readPath(spark, inputPath + "/otherresearchproduct", CommunityResult.class)) .union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class)); log.info("Number of result {}", result.count()); Dataset tmp = result .flatMap((FlatMapFunction) cr -> cr.getProjects().stream().map(p -> { return getFunderName(p); }).collect(Collectors.toList()).iterator(), Encoders.STRING()) .distinct(); List funderList = tmp.collectAsList(); funderList.forEach(funder -> { dumpResults(funder, result, outputPath); }); } @NotNull private static String getFunderName(Project p) { Optional ofunder = Optional.ofNullable(p.getFunder()); if (ofunder.isPresent()) { String fName = ofunder.get().getShortName(); if (fName.equalsIgnoreCase("ec")) { fName += "_" + ofunder.get().getFundingStream(); } return fName; } else { String fName = p.getId().substring(3, p.getId().indexOf("_")).toUpperCase(); if (fName.equalsIgnoreCase("ec")) { if (p.getId().contains("h2020")) { fName += "_H2020"; } else { fName += "_FP7"; } } else if (fName.equalsIgnoreCase("conicytf")) { fName = "CONICYT"; } else if (fName.equalsIgnoreCase("dfgf")) { fName = "DFG"; } else if (fName.equalsIgnoreCase("tubitakf")) { fName = "TUBITAK"; } else if (fName.equalsIgnoreCase("euenvagency")) { fName = "EEA"; } return fName; } } private static void dumpResults(String funder, Dataset results, String outputPath) { results.map((MapFunction) r -> { if (!Optional.ofNullable(r.getProjects()).isPresent()) { return null; } for (Project p : r.getProjects()) { String fName = getFunderName(p); if (fName.equalsIgnoreCase(funder)) { return r; } } return null; }, Encoders.bean(CommunityResult.class)) .filter(Objects::nonNull) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath + "/" + funder); } }