package eu.dnetlib.dhp.oa.graph.dump.eosc; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.oa.model.graph.GraphResult; import eu.dnetlib.dhp.schema.oaf.Relation; /** * @author miriam.baglioni * @Date 27/07/22 */ public class SelectEoscRelationsStep2 implements Serializable { private static final Logger log = LoggerFactory.getLogger(SelectEoscRelationsStep2.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SelectEoscRelationsStep2.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/reletion_selection_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String resultPath = parser.get("resultPath"); log.info("resultPath: {}", resultPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, resultPath + "/relation"); selectRelations(spark, inputPath, resultPath + "/relation", resultPath); }); } private static void selectRelations(SparkSession spark, String inputPath, String outputPath, String resultPath) { Dataset results = Utils .readPath(spark, resultPath + "/publication", GraphResult.class) .union( Utils .readPath(spark, resultPath + "/dataset", GraphResult.class)) .union( Utils .readPath(spark, resultPath + "/software", GraphResult.class)) .union( Utils .readPath(spark, resultPath + "/otherresearchproduct", GraphResult.class)); Dataset relations = Utils .readPath(spark, inputPath + "/relation", Relation.class) .filter( (FilterFunction) r -> !r.getDataInfo().getDeletedbyinference() && !r.getDataInfo().getInvisible()); } }