package eu.dnetlib.dhp.oa.graph.dump.community; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.oa.model.community.CommunityResult; import scala.Tuple2; public class SparkUpdateProjectInfo implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkUpdateProjectInfo.class); public static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkUpdateProjectInfo.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/project_input_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String preparedInfoPath = parser.get("preparedInfoPath"); log.info("preparedInfoPath: {}", preparedInfoPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); extend(spark, inputPath, outputPath, preparedInfoPath); }); } private static void extend( SparkSession spark, String inputPath, String outputPath, String preparedInfoPath) { Dataset result = Utils.readPath(spark, inputPath, CommunityResult.class); Dataset resultProject = Utils.readPath(spark, preparedInfoPath, ResultProject.class); result .joinWith( resultProject, result.col("id").equalTo(resultProject.col("resultId")), "left") .map((MapFunction, CommunityResult>) value -> { CommunityResult r = value._1(); Optional.ofNullable(value._2()).ifPresent(rp -> r.setProjects(rp.getProjectsList())); return r; }, Encoders.bean(CommunityResult.class)) .write() .option("compression", "gzip") .mode(SaveMode.Append) .json(outputPath); } }