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@ -6,9 +6,6 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.Serializable;
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import java.util.Optional;
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import eu.dnetlib.dhp.eosc.model.Organization;
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import eu.dnetlib.dhp.eosc.model.Project;
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import eu.dnetlib.dhp.schema.common.ModelConstants;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.FilterFunction;
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@ -21,8 +18,11 @@ import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.eosc.model.Organization;
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import eu.dnetlib.dhp.eosc.model.Project;
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import eu.dnetlib.dhp.eosc.model.Provenance;
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import eu.dnetlib.dhp.eosc.model.RelType;
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import eu.dnetlib.dhp.schema.common.ModelConstants;
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import eu.dnetlib.dhp.schema.oaf.DataInfo;
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import eu.dnetlib.dhp.schema.oaf.Relation;
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import scala.Tuple2;
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@ -74,18 +74,26 @@ public class SparkDumpOrganizationProject implements Serializable {
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Dataset<Organization> organization = Utils.readPath(spark, outputPath + "organization", Organization.class);
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Dataset<Project> project = Utils.readPath(spark, outputPath + "project", Project.class);
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Dataset<Relation> relation = Utils.readPath(spark, inputPath + "/relation", Relation.class)
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.filter((FilterFunction<Relation>) r-> !r.getDataInfo().getDeletedbyinference() && r.getRelClass().equalsIgnoreCase(ModelConstants.IS_PARTICIPANT));
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Dataset<Relation> relation = Utils
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.readPath(spark, inputPath + "/relation", Relation.class)
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.filter(
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(FilterFunction<Relation>) r -> !r.getDataInfo().getDeletedbyinference()
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&& r.getRelClass().equalsIgnoreCase(ModelConstants.IS_PARTICIPANT));
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Dataset<Relation> eoscOrgs = relation.joinWith(organization, relation.col("source").equalTo(organization.col("id")))
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.map((MapFunction<Tuple2<Relation, Organization>, Relation>) t2 -> t2._1(), Encoders.bean(Relation.class));
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Dataset<Relation> eoscOrgs = relation
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.joinWith(organization, relation.col("source").equalTo(organization.col("id")))
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.map((MapFunction<Tuple2<Relation, Organization>, Relation>) t2 -> t2._1(), Encoders.bean(Relation.class));
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eoscOrgs.joinWith(project, eoscOrgs.col("target").equalTo(project.col("id")))
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.map((MapFunction<Tuple2<Relation, Project>, eu.dnetlib.dhp.eosc.model.Relation>) t2-> eu.dnetlib.dhp.eosc.model.Relation.newInstance(t2._1().getSource(), t2._1().getTarget()), Encoders.bean(eu.dnetlib.dhp.eosc.model.Relation.class))
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.write()
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.mode(SaveMode.Overwrite)
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.option("compression","gzip")
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.json(outputPath + "organizationProject");
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eoscOrgs
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.joinWith(project, eoscOrgs.col("target").equalTo(project.col("id")))
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.map(
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(MapFunction<Tuple2<Relation, Project>, eu.dnetlib.dhp.eosc.model.Relation>) t2 -> eu.dnetlib.dhp.eosc.model.Relation
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.newInstance(t2._1().getSource(), t2._1().getTarget()),
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Encoders.bean(eu.dnetlib.dhp.eosc.model.Relation.class))
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.write()
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.mode(SaveMode.Overwrite)
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.option("compression", "gzip")
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.json(outputPath + "organizationProject");
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}
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