selects actual result per result type associated with the given country and saves them
This commit is contained in:
parent
7f57f3cd1e
commit
6ba43a1b67
|
|
@ -0,0 +1,135 @@
|
|||
package eu.dnetlib.dhp.oa.graph.dump.country;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.google.gson.Gson;
|
||||
import com.jayway.jsonpath.DocumentContext;
|
||||
import com.jayway.jsonpath.JsonPath;
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.Constants;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.ResultMapper;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.Utils;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.MasterDuplicate;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.SparkDumpResult;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.criteria.VerbResolver;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.criteria.VerbResolverFactory;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.selectionconstraints.Param;
|
||||
import eu.dnetlib.dhp.oa.graph.dump.subset.selectionconstraints.SelectionConstraints;
|
||||
import eu.dnetlib.dhp.oa.model.graph.GraphResult;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
import eu.dnetlib.dhp.schema.oaf.KeyValue;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.function.MapFunction;
|
||||
import org.apache.spark.sql.Dataset;
|
||||
import org.apache.spark.sql.Encoders;
|
||||
import org.apache.spark.sql.SaveMode;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import scala.Tuple2;
|
||||
|
||||
import javax.rmi.CORBA.Util;
|
||||
import java.io.Serializable;
|
||||
import java.util.*;
|
||||
|
||||
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
|
||||
|
||||
/**
|
||||
* @author miriam.baglioni
|
||||
* @Date 27/04/23
|
||||
* Selects the results having in the country the given country
|
||||
*/
|
||||
public class SparkFindResultWithCountry implements Serializable {
|
||||
private static final Logger log = LoggerFactory.getLogger(SparkFindResultWithCountry.class);
|
||||
|
||||
public static final String COMPRESSION = "compression";
|
||||
public static final String GZIP = "gzip";
|
||||
|
||||
public static void main(String[] args) throws Exception {
|
||||
String jsonConfiguration = IOUtils
|
||||
.toString(
|
||||
SparkFindResultWithCountry.class
|
||||
.getResourceAsStream(
|
||||
"/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json"));
|
||||
|
||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
|
||||
parser.parseArgument(args);
|
||||
|
||||
Boolean isSparkSessionManaged = Optional
|
||||
.ofNullable(parser.get("isSparkSessionManaged"))
|
||||
.map(Boolean::valueOf)
|
||||
.orElse(Boolean.TRUE);
|
||||
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
|
||||
|
||||
final String inputPath = parser.get("sourcePath");
|
||||
log.info("inputPath: {}", inputPath);
|
||||
|
||||
final String outputPath = parser.get("outputPath");
|
||||
log.info("outputPath: {}", outputPath);
|
||||
|
||||
final String resultType = parser.get("resultType");
|
||||
log.info("resultType: {}", resultType);
|
||||
|
||||
final String resultClassName = parser.get("resultTableName");
|
||||
log.info("resultTableName: {}", resultClassName);
|
||||
|
||||
|
||||
|
||||
final String preparedInfoPath = parser.get("resultWithCountry");
|
||||
|
||||
|
||||
|
||||
Class<? extends eu.dnetlib.dhp.schema.oaf.Result> inputClazz = (Class<? extends eu.dnetlib.dhp.schema.oaf.Result>) Class
|
||||
.forName(resultClassName);
|
||||
|
||||
run(
|
||||
isSparkSessionManaged, inputPath, outputPath, inputClazz,
|
||||
resultType, preparedInfoPath);
|
||||
|
||||
}
|
||||
|
||||
private static void run(Boolean isSparkSessionManaged, String inputPath, String outputPath,
|
||||
|
||||
Class<? extends eu.dnetlib.dhp.schema.oaf.Result> inputClazz, String resultType, String preparedInfoPath) {
|
||||
SparkConf conf = new SparkConf();
|
||||
|
||||
|
||||
runWithSparkSession(
|
||||
conf,
|
||||
isSparkSessionManaged,
|
||||
spark -> {
|
||||
Utils.removeOutputDir(spark, outputPath + "/original/" + resultType);
|
||||
|
||||
resultDump(
|
||||
spark, inputPath, outputPath, inputClazz, resultType, preparedInfoPath);
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
public static <I extends eu.dnetlib.dhp.schema.oaf.Result> void resultDump(
|
||||
SparkSession spark,
|
||||
String inputPath,
|
||||
String outputPath,
|
||||
Class<I> inputClazz,
|
||||
|
||||
String resultType,
|
||||
|
||||
String preparedInfoPath) {
|
||||
|
||||
Dataset<String> resultsWithCountry = Utils.readPath(spark, preparedInfoPath, String.class).distinct();
|
||||
|
||||
|
||||
Dataset<I> result = Utils
|
||||
.readPath(spark, inputPath, inputClazz);
|
||||
|
||||
resultsWithCountry.joinWith(result, resultsWithCountry.col("value").equalTo(result.col("id")))
|
||||
.map((MapFunction<Tuple2<String,I>, I>) t2 -> t2._2(), Encoders.bean(inputClazz) )
|
||||
.write()
|
||||
.mode(SaveMode.Overwrite)
|
||||
.option("compression", "gzip")
|
||||
.json(outputPath + "/original/" + resultType);
|
||||
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
Loading…
Reference in New Issue