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[Dump] removing all EOSC related addition from master and fixed issue on dump of datasource pids

This commit is contained in:
Miriam Baglioni 2022-10-13 11:49:37 +02:00
parent 8a574fee2a
commit 3cc2802a75
6 changed files with 22 additions and 20 deletions
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2
dump-schema/src/test/java/GenerateJsonSchema.java
View File

@ -45,8 +45,6 @@ class GenerateJsonSchema {
System.out.println(jsonSchema.toString());
}
@Test
void generateJsonSchema3() throws IOException {

8
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
View File

@ -223,6 +223,12 @@ public class ResultMapper implements Serializable {
.ofNullable(input.getSubject())
.ifPresent(
value -> value
.stream().filter(s -> !((s.getQualifier().getClassid().equalsIgnoreCase("fos") &&
Optional.ofNullable(s.getDataInfo()).isPresent() && Optional.ofNullable(s.getDataInfo().getProvenanceaction()).isPresent()&&
s.getDataInfo().getProvenanceaction().getClassid().equalsIgnoreCase("subject:fos")) ||
(s.getQualifier().getClassid().equalsIgnoreCase("sdg") &&
Optional.ofNullable(s.getDataInfo()).isPresent() && Optional.ofNullable(s.getDataInfo().getProvenanceaction()).isPresent()&&
s.getDataInfo().getProvenanceaction().getClassid().equalsIgnoreCase("subject:sdg"))))
.forEach(s -> subjectList.add(getSubject(s))));
out.setSubjects(subjectList);
@ -230,7 +236,7 @@ public class ResultMapper implements Serializable {
out.setType(input.getResulttype().getClassid());
if (Optional.ofNullable(input.getMeasures()).isPresent() && input.getMeasures().size() > 0
&& !Constants.DUMPTYPE.EOSC.getType().equals(dumpType)) {
) {
List<Indicator> indicators = new ArrayList<>();
input
.getMeasures()

22
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkUpdateProjectInfo.java
View File

@ -71,16 +71,18 @@ public class SparkUpdateProjectInfo implements Serializable {
String preparedInfoPath) {
Dataset<CommunityResult> result = Utils.readPath(spark, inputPath, CommunityResult.class);
Dataset<ResultProject> resultProject = Utils.readPath(spark, preparedInfoPath, ResultProject.class);
result
.joinWith(
resultProject, result.col("id").equalTo(resultProject.col("resultId")),
"left")
.map((MapFunction<Tuple2<CommunityResult, ResultProject>, CommunityResult>) value -> {
CommunityResult r = value._1();
Optional.ofNullable(value._2()).ifPresent(rp -> r.setProjects(rp.getProjectsList()));
return r;
}, Encoders.bean(CommunityResult.class))
.write()
Dataset<CommunityResult> tmp = result
.joinWith(
resultProject, result.col("id").equalTo(resultProject.col("resultId")),
"left")
.map((MapFunction<Tuple2<CommunityResult, ResultProject>, CommunityResult>) value -> {
CommunityResult r = value._1();
Optional.ofNullable(value._2()).ifPresent(rp -> r.setProjects(rp.getProjectsList()));
return r;
}, Encoders.bean(CommunityResult.class));
long
count = tmp.count();
tmp.write()
.option("compression", "gzip")
.mode(SaveMode.Append)
.json(outputPath);

4
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
View File

@ -126,10 +126,10 @@ public class DumpGraphEntities implements Serializable {
Optional
.ofNullable(d.getPid())
.ifPresent(
pids -> pids
pids -> datasource.setPid(pids
.stream()
.map(p -> DatasourcePid.newInstance(p.getQualifier().getClassid(), p.getValue()))
.collect(Collectors.toList()));
.collect(Collectors.toList())));
Optional
.ofNullable(d.getDatasourcetype())

4
dump/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
View File

@ -25,9 +25,7 @@ import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.gson.Gson;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
import eu.dnetlib.dhp.oa.model.Instance;
import eu.dnetlib.dhp.oa.model.OpenAccessRoute;
import eu.dnetlib.dhp.oa.model.community.CommunityResult;
@ -1096,8 +1094,6 @@ public class DumpJobTest {
}
@Test
public void testArticlePCA() {
final String sourcePath = getClass()

2
dump/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/datasource/datasource.json
View File

@ -2,4 +2,4 @@
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