Merge pull request 'oct-update' (#1) from oct-update into master

Reviewed-on: #1

docker-images/spark-operator/Dockerfile

@@ -0,0 +1,7 @@
+# docker build -t spark-operator:2.0.2 . && kind load docker-image -n dnet-data-platform spark-operator:2.0.2
+FROM kubeflow/spark-operator:2.0.2
+
+ENV SPARK_HOME /opt/spark
+USER root
+RUN curl https://repo1.maven.org/maven2/org/apache/hadoop/hadoop-aws/3.3.4/hadoop-aws-3.3.4.jar -o ${SPARK_HOME}/jars/hadoop-aws-3.3.4.jar
+RUN curl https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-bundle/1.12.262/aws-java-sdk-bundle-1.12.262.jar -o ${SPARK_HOME}/jars/aws-java-sdk-bundle-1.12.262.jar

envs/local/airbyte.yaml

@@ -1,13 +0,0 @@
-
-webapp:
-  ingress:
-    enabled: true
-    className: "nginx"
-    annotations:
-      kubernetes.io/ingress.class: nginx
-    hosts:
-      - host: localhost
-        paths:
-          - path: /
-            pathType: ImplementationSpecific
-    tls: []

envs/local/airflow.yaml

@@ -31,9 +31,9 @@ dags:
     enabled: true
   gitSync:
     enabled: true
-    repo: "https://code-repo.d4science.org/D-Net/code-infrasturcutre-lab.git"
+    repo: "https://code-repo.d4science.org/D-Net/code-infrastructure-lab.git"
-    branch: "airflow"
+    branch: "master"
-    subPath: "airflow/dags"
+    subPath: "workflow/dnet"
 
 config:
   webserver:
@@ -42,7 +42,7 @@ config:
   logging:
     remote_logging: "True"
     logging_level: "INFO"
-    remote_base_log_folder: "s3://dnet-airflow/logs"
+    remote_base_log_folder: "s3://workflow-logs/logs"
     remote_log_conn_id: "s3_conn"
     encrypt_s3_logs: "False"
 

envs/local/minio-tenant.yaml

@@ -1,42 +1,3 @@
-
-
-###
-# Root key for dynamically creating a secret for use with configuring root MinIO User
-# Specify the ``name`` and then a list of environment variables.
-#
-# .. important::
-#
-#    Do not use this in production environments.
-#    This field is intended for use with rapid development or testing only.
-#
-# For example:
-#
-# .. code-block:: yaml
-#
-#    name: myminio-env-configuration
-#    accessKey: minio
-#    secretKey: minio123
-#
-secrets:
-  name: myminio-env-configuration
-  accessKey: minio
-  secretKey: minio123
-  ###
-  # The name of an existing Kubernetes secret to import to the MinIO Tenant
-  # The secret must contain a key ``config.env``.
-  # The values should be a series of export statements to set environment variables for the Tenant.
-  # For example:
-  #
-  # .. code-block:: shell
-  #
-  #    stringData:
-  #       config.env: | -
-  #         export MINIO_ROOT_USER=ROOTUSERNAME
-  #         export MINIO_ROOT_PASSWORD=ROOTUSERPASSWORD
-  #
-  #existingSecret:
-  #  name: myminio-env-configuration
-###
 # Root key for MinIO Tenant Chart
 tenant:
   ###
@@ -47,14 +8,14 @@ tenant:
   ###
   # Specify the Operator container image to use for the deployment.
   # ``image.tag``
-  # For example, the following sets the image to the ``quay.io/minio/operator`` repo and the v5.0.12 tag.
+  # For example, the following sets the image to the ``quay.io/minio/operator`` repo and the v6.0.4 tag.
   # The container pulls the image if not already present:
   #
   # .. code-block:: yaml
   #
   #    image:
   #       repository: quay.io/minio/minio
-  #       tag: RELEASE.2024-02-09T21-25-16Z
+  #       tag: RELEASE.2024-10-02T17-50-41Z
   #       pullPolicy: IfNotPresent
   #
   # The chart also supports specifying an image based on digest value:
@@ -69,7 +30,7 @@ tenant:
   #
   image:
     repository: quay.io/minio/minio
-    tag: RELEASE.2024-02-09T21-25-16Z
+    tag: RELEASE.2024-10-02T17-50-41Z
     pullPolicy: IfNotPresent
   ###
   #
@@ -87,6 +48,44 @@ tenant:
   configuration:
     name: myminio-env-configuration
   ###
+  # Root key for dynamically creating a secret for use with configuring root MinIO User
+  # Specify the ``name`` and then a list of environment variables.
+  #
+  # .. important::
+  #
+  #    Do not use this in production environments.
+  #    This field is intended for use with rapid development or testing only.
+  #
+  # For example:
+  #
+  # .. code-block:: yaml
+  #
+  #    name: myminio-env-configuration
+  #    accessKey: minio
+  #    secretKey: minio123
+  #
+  configSecret:
+    name: myminio-env-configuration
+    accessKey: minio
+    secretKey: minio123
+    #existingSecret: true
+
+  ###
+  # If this variable is set to true, then enable the usage of an existing Kubernetes secret to set environment variables for the Tenant.
+  # The existing Kubernetes secret name must be placed under .tenant.configuration.name e.g. existing-minio-env-configuration
+  # The secret must contain a key ``config.env``.
+  # The values should be a series of export statements to set environment variables for the Tenant.
+  # For example:
+  #
+  # .. code-block:: shell
+  #
+  #    stringData:
+  #       config.env: |-
+  #         export MINIO_ROOT_USER=ROOTUSERNAME
+  #         export MINIO_ROOT_PASSWORD=ROOTUSERPASSWORD
+  #
+  #   existingSecret: false
+  ###
   # Top level key for configuring MinIO Pool(s) in this Tenant.
   #
   # See `Operator CRD: Pools <https://min.io/docs/minio/kubernetes/upstream/reference/operator-crd.html#pool>`__ for more information on all subfields.
@@ -104,7 +103,7 @@ tenant:
       volumesPerServer: 4
       ###
       # The capacity per volume requested per MinIO Tenant Pod.
-      size: 1Gi
+      size: 50Gi
       ###
       # The `storageClass <https://kubernetes.io/docs/concepts/storage/storage-classes/>`__ to associate with volumes generated for this pool.
       #
@@ -166,6 +165,12 @@ tenant:
         runAsUser: 1000
         runAsGroup: 1000
         runAsNonRoot: true
+        allowPrivilegeEscalation: false
+        capabilities:
+          drop:
+            - ALL
+        seccompProfile:
+          type: RuntimeDefault
       ###
       #
       # An array of `Topology Spread Constraints <https://kubernetes.io/docs/concepts/scheduling-eviction/topology-spread-constraints/>`__ to associate to Operator Console pods.
@@ -225,6 +230,10 @@ tenant:
     # Enable automatic Kubernetes based `certificate generation and signing <https://kubernetes.io/docs/tasks/tls/managing-tls-in-a-cluster>`__
     requestAutoCert: true
     ###
+    # The minimum number of days to expiry before an alert for an expiring certificate is fired.
+    # In the below example, if a given certificate will expire in 7 days then expiration events will only be triggered 1 day before expiry
+    # certExpiryAlertThreshold: 1
+    ###
     # This field is used only when ``requestAutoCert: true``.
     # Use this field to set CommonName for the auto-generated certificate.
     # MinIO defaults to using the internal Kubernetes DNS name for the pod
@@ -248,7 +257,9 @@ tenant:
   #    - name: my-minio-bucket
   #         objectLock: false        # optional
   #         region: us-east-1        # optional
-  buckets: [ ]
+  buckets: [ ] 
+
+    
   ###
   # Array of Kubernetes secrets from which the Operator generates MinIO users during tenant provisioning.
   #
@@ -271,6 +282,9 @@ tenant:
   # Refer
   startup: { }
   ###
+  # The `Lifecycle hooks <https://kubernetes.io/docs/concepts/containers/container-lifecycle-hooks/>`__ for container.
+  lifecycle: { }
+  ###
   # Directs the Operator to deploy the MinIO S3 API and Console services as LoadBalancer objects.
   #
   # If the Kubernetes cluster has a configured LoadBalancer, it can attempt to route traffic to those services automatically.
@@ -337,14 +351,14 @@ tenant:
   #  # Image from tag (original behavior), for example:
   #  # image:
   #  #   repository: quay.io/minio/kes
-  #  #   tag: 2024-01-11T13-09-29Z
+  #  #   tag: 2024-09-11T07-22-50Z
   #  # Image from digest (added after original behavior), for example:
   #  # image:
   #  #   repository: quay.io/minio/kes@sha256
   #  #   digest: fb15af611149892f357a8a99d1bcd8bf5dae713bd64c15e6eb27fbdb88fc208b
   #  image:
   #    repository: quay.io/minio/kes
-  #    tag: 2024-01-11T13-09-29Z
+  #    tag: 2024-09-11T07-22-50Z
   #    pullPolicy: IfNotPresent
   #  env: [ ]
   #  replicas: 2
@@ -417,6 +431,17 @@ tenant:
   #    runAsGroup: 1000
   #    runAsNonRoot: true
   #    fsGroup: 1000
+  #  containerSecurityContext:
+  #    runAsUser: 1000
+  #    runAsGroup: 1000
+  #    runAsNonRoot: true
+  #    allowPrivilegeEscalation: false
+  #    capabilities:
+  #      drop:
+  #        - ALL
+  #    seccompProfile:
+  #      type: RuntimeDefault
+
 ###
 # Configures `Ingress <https://kubernetes.io/docs/concepts/services-networking/ingress/>`__ for the Tenant S3 API and Console.
 #
@@ -428,7 +453,7 @@ ingress:
     labels: { }
     annotations:
       nginx.ingress.kubernetes.io/backend-protocol: "HTTPS"
-      nginx.ingress.kubernetes.io/proxy-body-size: 100m
+      nginx.ingress.kubernetes.io/proxy-body-size: 10000m
     tls: [ ]
     host: minio.local
     path: /
@@ -439,6 +464,7 @@ ingress:
     labels: { }
     annotations:
       nginx.ingress.kubernetes.io/backend-protocol: "HTTPS"
+      nginx.ingress.kubernetes.io/proxy-body-size: 10000m
     tls: [ ]
     host: minio-console.local
     path: /
@@ -451,7 +477,7 @@ ingress:
 #    kind: Secret
 #    type: Opaque
 #    metadata:
-#      name: {{ dig "secrets" "existingSecret" "" (.Values | merge (dict)) }}
+#      name: {{ dig "tenant" "configSecret" "name" "" (.Values | merge (dict)) }}
 #    stringData:
 #      config.env: |-
 #        export MINIO_ROOT_USER='minio'

main.tf

@@ -1,21 +1,31 @@
 module "minio" {
-  source = "./modules/minio"
+  source           = "./modules/minio"
-  kube_context = var.kube_context
+  kube_context     = var.kube_context
-  namespace_prefix=var.namespace_prefix
+  namespace_prefix = var.namespace_prefix
+  buckets          = var.minio_buckets
 }
 
 
 module "airflow" {
-  source = "./modules/airflow"
+  source           = "./modules/airflow"
-  kube_context = var.kube_context
+  kube_context     = var.kube_context
-  admin_user = var.admin_user
+  admin_user       = var.admin_user
-  admin_password = var.admin_password
+  admin_password   = var.admin_password
-  namespace_prefix= var.namespace_prefix
+  namespace_prefix = var.namespace_prefix
-  admin_hash = var.admin_hash
+  admin_hash       = var.admin_hash
-  env = var.env
+  env              = var.env
-  domain = var.domain
+  domain           = var.domain
-  s3_endpoint = var.s3_endpoint
+  s3_endpoint      = var.s3_endpoint
-  s3_key = var.s3_key
+  s3_key           = var.s3_key
-  s3_secret = var.s3_secret
+  s3_secret        = var.s3_secret
+  branch_name      = var.dag_branch_name
+  dag_path         = var.dag_path_name
 
 }
+
+module "jupyterhub" {
+  source           = "./modules/jupyterhub"
+  kube_context     = var.kube_context
+  namespace_prefix = var.namespace_prefix
+  domain           = var.domain
+}

modules/airflow/airflow.tf

@@ -22,15 +22,17 @@ resource "kubernetes_role" "airflow_spark_role" {
 
   rule {
     api_groups = ["sparkoperator.k8s.io"]
-    resources  = ["sparkapplications", "sparkapplications/status",
+    resources = [
-        "scheduledsparkapplications", "scheduledsparkapplications/status"]
+      "sparkapplications", "sparkapplications/status",
-    verbs      = ["*"]
+      "scheduledsparkapplications", "scheduledsparkapplications/status"
+    ]
+    verbs = ["*"]
   }
 
   rule {
     api_groups = [""]
-    resources  = ["pods/log"]
+    resources = ["pods", "pods/log"]
-    verbs      = ["*"]
+    verbs = ["*"]
   }
 }
 
@@ -55,74 +57,67 @@ resource "kubernetes_role_binding_v1" "airflow_spark_role_binding" {
 }
 
 resource "kubernetes_role_binding_v1" "airflow_spark_role_binding2" {
- depends_on = [kubernetes_namespace.spark_jobs_namespace]
+  depends_on = [kubernetes_namespace.spark_jobs_namespace]
- metadata {
+  metadata {
-   name      = "airflow-spark-role-binding2"
+    name      = "airflow-spark-role-binding2"
-   namespace = "${var.namespace_prefix}spark-jobs"
+    namespace = "${var.namespace_prefix}spark-jobs"
- }
+  }
 
- subject {
+  subject {
-   kind      = "ServiceAccount"
+    kind      = "ServiceAccount"
-   name      = "airflow-worker"
+    name      = "airflow-worker"
-   namespace = "${var.namespace_prefix}airflow"
+    namespace = "${var.namespace_prefix}airflow"
- }
+  }
 
- role_ref {
+  role_ref {
-   api_group = "rbac.authorization.k8s.io"
+    api_group = "rbac.authorization.k8s.io"
-   kind      = "Role"
+    kind      = "Role"
-   name      = "spark-role"
+    name      = "spark-role"
- }
+  }
 }
-#
-#
-# resource "kubernetes_role_binding_v1" "spark_role_binding" {
-#   depends_on = [kubernetes_namespace.spark_jobs_namespace]
-#   metadata {
-#     name      = "spark-role-binding"
-#     namespace = "${var.namespace_prefix}spark-jobs"
-#   }
-#
-#   subject {
-#     kind      = "ServiceAccount"
-#     name      = "spark"
-#     namespace = "${var.namespace_prefix}spark-jobs"
-#   }
-#
-#   role_ref {
-#     api_group = "rbac.authorization.k8s.io"
-#     kind      = "Role"
-#     name      = "spark-role"
-#   }
-# }
-#
 
 resource "helm_release" "gcp_spark_operator" {
-  depends_on        = [kubernetes_namespace.spark_jobs_namespace]
+  depends_on = [kubernetes_namespace.spark_jobs_namespace]
   name              = "gcp-spark-operator"
   chart             = "spark-operator"
   repository        = "https://kubeflow.github.io/spark-operator"
   create_namespace  = "true"
   namespace         = "${var.namespace_prefix}gcp-spark-operator"
   dependency_update = "true"
-  version           = "1.2.7"
+  version           = "2.0.2"
 
   set {
     name  = "image.repository"
-    value = "kubeflow/spark-operator"
+    value = "spark-operator"
   }
 
   set {
     name  = "image.tag"
-    value = "v1beta2-1.4.5-3.5.0"
+    value = "2.0.2"
   }
 
   set {
-    name  = "sparkJobNamespaces"
+    name  = "spark.jobNamespaces"
     value = "{${var.namespace_prefix}spark-jobs}"
   }
 
   set {
-    name  = "serviceAccounts.spark.name"
+    name  = "spark.serviceAccount.create"
+    value = "true"
+  }
+
+  set {
+    name  = "spark.serviceAccount.name"
+    value = "spark"
+  }
+
+  set {
+    name  = "controller.serviceAccount.create"
+    value = "true"
+  }
+
+  set {
+    name  = "controller.serviceAccount.name"
     value = "spark"
   }
 
@@ -132,7 +127,7 @@ resource "helm_release" "gcp_spark_operator" {
   }
 
   set {
-    name  = "ingressUrlFormat"
+    name  = "driver.ingressUrlFormat"
     value = "\\{\\{$appName\\}\\}.\\{\\{$appNamespace\\}\\}.${var.domain}"
     type  = "string"
   }
@@ -147,13 +142,13 @@ resource "kubernetes_namespace" "airflow" {
 resource "kubernetes_secret" "s3_conn_secrets" {
   depends_on = [kubernetes_namespace.airflow]
   metadata {
-    name = "s3-conn-secrets"
+    name      = "s3-conn-secrets"
     namespace = "${var.namespace_prefix}airflow"
   }
 
   data = {
-    username = var.s3_key
+    username             = var.s3_key
-    password = var.s3_secret
+    password             = var.s3_secret
     AIRFLOW_CONN_S3_CONN = <<EOT
 {
   "conn_type": "aws",
@@ -171,7 +166,6 @@ EOT
 }
 
 
-
 resource "helm_release" "airflow" {
   depends_on = [kubernetes_secret.s3_conn_secrets]
 
@@ -180,7 +174,7 @@ resource "helm_release" "airflow" {
   repository        = "https://airflow.apache.org"
   namespace         = "${var.namespace_prefix}airflow"
   dependency_update = "true"
-  version           = "1.13.0"
+  version           = "1.15.0"
 
   values = [
     file("./envs/${var.env}/airflow.yaml")
@@ -197,7 +191,7 @@ resource "helm_release" "airflow" {
   }
 
   set {
-    name  = "spec.values.env"
+    name = "spec.values.env"
     value = yamlencode([
       {
         name  = "AIRFLOW__WEBSERVER__BASE_URL",
@@ -211,13 +205,28 @@ resource "helm_release" "airflow" {
   }
 
   set {
-    name  = "images.airflow.repository"
+    name  = "dags.gitSync.repo"
-    value = "gbloisi/airflow"
+    value = var.repo_url
   }
 
+  set {
+    name  = "dags.gitSync.branch"
+    value = var.branch_name
+  }
+
+  set {
+    name  = "dags.gitSync.subPath"
+    value = var.dag_path
+  }
+
+  # set {
+  #   name  = "images.airflow.repository"
+  #   value = "gbloisi/airflow"
+  # }
+
   set {
     name  = "images.airflow.tag"
-    value = "2.8.3rc1-python3.11"
+    value = "2.9.3-python3.11"
   }
 
   set {

modules/airflow/providers.tf

@@ -1,12 +1,9 @@
-provider "helm" {
+terraform {
-  # Several Kubernetes authentication methods are possible: https://registry.terraform.io/providers/hashicorp/kubernetes/latest/docs#authentication
+  required_providers {
-  kubernetes {
+    helm = {
-    config_path = pathexpand(var.kube_config)
+    }
-    config_context = var.kube_context
+
+    kubernetes = {
+    }
   }
 }
-
-provider "kubernetes" {
-  config_path = pathexpand(var.kube_config)
-  config_context = var.kube_context
-}

modules/airflow/variables.tf

@@ -49,3 +49,18 @@ variable "admin_password" {
 variable "admin_hash" {
   type    = string
 }
+
+variable "repo_url" {
+  type    = string
+  default = "https://code-repo.d4science.org/D-Net/code-infrastructure-lab.git"
+}
+
+variable "branch_name" {
+  type    = string
+  default = "master"
+}
+
+variable "dag_path" {
+  type    = string
+  default = "workflow/dnet"
+}

modules/jupyterhub/main.tf

@@ -0,0 +1,44 @@
+resource "helm_release" "jupyterhub" {
+  name              = "jupyterhub"
+  chart             = "jupyterhub"
+  repository        = "https://hub.jupyter.org/helm-chart/"
+  create_namespace  = "true"
+  namespace         = "${var.namespace_prefix}spark-jobs"
+  dependency_update = "true"
+  version           = "3.3.8"
+
+  set {
+    name = "ingress.enabled"
+    value = "true"
+  }
+
+  set {
+    name = "ingress.ingressClassName"
+    value = "nginx"
+  }
+
+  set {
+    name = "ingress.hosts[0]"
+    value = "jupyter.${var.domain}"
+  }
+
+  set {
+    name = "singleuser.image.name"
+    value = "jupyter/all-spark-notebook"
+  }
+
+  set {
+    name = "singleuser.image.tag"
+    value = "spark-3.5.0"
+  }
+
+  set {
+    name = "singleuser.cmd"
+    value = "start-notebook.py"
+  }
+
+  set {
+    name = "singleuser.serviceAccountName"
+    value = "spark"
+  }
+}

modules/jupyterhub/providers.tf

@@ -0,0 +1,9 @@
+terraform {
+  required_providers {
+    helm = {
+    }
+
+    kubernetes = {
+    }
+  }
+}

modules/jupyterhub/variables.tf

@@ -0,0 +1,25 @@
+variable "env" {
+  type    = string
+  default = "local"
+}
+
+variable "kube_config" {
+  type    = string
+  default = "~/.kube/config"
+}
+
+variable "kube_context" {
+  type    = string
+  default = "default"
+}
+
+variable "namespace_prefix" {
+  type    = string
+  default = "lot1-"
+}
+
+variable "domain" {
+  type    = string
+  default = "local-dataplatform"
+}
+

modules/minio/minio-bucket.yaml

@@ -1,34 +0,0 @@
-apiVersion: batch/v1
-kind: Job
-metadata:
-  name: create-bucket
-  namespace: block-storage
-spec:
-  template:
-    spec:
-      containers:
-        - name: createbucket
-          image: amazon/aws-cli
-          command: ["aws"]
-          args:
-            -  s3api
-            - create-bucket
-            - --bucket
-            - postgres
-            - --endpoint-url
-            - http://minio:80
-          env:
-            - name: AWS_ACCESS_KEY_ID
-              valueFrom:
-                secretKeyRef:
-                  name: minio-secret
-                  key: accesskey
-
-            - name: AWS_SECRET_ACCESS_KEY
-              valueFrom:
-                secretKeyRef:
-                  name: minio-secret
-                  key: secretkey
-
-      restartPolicy: Never
-  backoffLimit: 1

modules/minio/minio-operator.tf

@@ -5,5 +5,5 @@ resource "helm_release" "minio_operator" {
   create_namespace  = "true"
   namespace         = "minio-operator"
   dependency_update = "true"
-  version           = "5.0.12"
+  version           = "6.0.4"
 }

modules/minio/minio-tenant.tf

@@ -6,7 +6,7 @@ resource "helm_release" "minio_tenant" {
   create_namespace  = "true"
   namespace         = "${var.namespace_prefix}minio-tenant"
   dependency_update = "true"
-  version           = "5.0.12"
+  version           = "6.0.4"
 
   values = [
     file("./envs/${var.env}/minio-tenant.yaml")
@@ -21,40 +21,26 @@ resource "helm_release" "minio_tenant" {
     name = "ingress.console.host"
     value = "console-minio.${var.domain}"
   }
-}
 
-/*
+  dynamic "set" {
-resource "kubernetes_manifest" "minio_ingress" {
+    for_each = var.buckets
-  manifest = yamldecode(<<YAML
+    content {
-apiVersion: networking.k8s.io/v1
+      name  = "tenant.buckets[${set.key}].name"
-kind: Ingress
+      value = set.value.name
-metadata:
+    }
-  name: ingress-minio
+  }
-  namespace: block-storage
+
-  annotations:
+
-    kubernetes.io/ingress.class: "nginx"
+  # set {
-    ## Remove if using CA signed certificate
+  #   name = "tenant.buckets[0].name"
-    nginx.ingress.kubernetes.io/proxy-ssl-verify: "off"
+  #   value =  "workflow-logs"
-    nginx.ingress.kubernetes.io/backend-protocol: "HTTPS"
+  # }
-    nginx.ingress.kubernetes.io/rewrite-target: /
+
-    nginx.ingress.kubernetes.io/proxy-body-size: "0"
+  # set {
-spec:
+  #   name = "tenant.buckets[1].name"
-  ingressClassName: nginx
+  #   value =  "binaries"
-  tls:
+  # }
-  - hosts:
+
-      - minio.${var.domain}
+
-    secretName: nginx-tls
+  # ,"binaries","graph","pippo"]
-  rules:
+}
-  - host: minio.${var.domain}
-    http:
-      paths:
-      - path: /
-        pathType: Prefix
-        backend:
-          service:
-            name: minio
-            port:
-              number: 443
-  YAML
-  )
-}*/

modules/minio/providers.tf

@@ -1,12 +1,9 @@
-provider "helm" {
+terraform {
-  # Several Kubernetes authentication methods are possible: https://registry.terraform.io/providers/hashicorp/kubernetes/latest/docs#authentication
+  required_providers {
-  kubernetes {
+    helm = {
-    config_path = pathexpand(var.kube_config)
+    }
-    config_context = var.kube_context
+
+    kubernetes = {
+    }
   }
 }
-
-provider "kubernetes" {
-  config_path = pathexpand(var.kube_config)
-  config_context = var.kube_context
-}

modules/minio/variables.tf

@@ -22,3 +22,9 @@ variable "domain" {
   type    = string
   default = "local-dataplatform"
 }
+
+variable "buckets" {
+  type    = list(map(string))
+  default = [ ]
+}
+

providers.tf

@@ -0,0 +1,12 @@
+provider "helm" {
+  # Several Kubernetes authentication methods are possible: https://registry.terraform.io/providers/hashicorp/kubernetes/latest/docs#authentication
+  kubernetes {
+    config_path = pathexpand(var.kube_config)
+    config_context = var.kube_context
+  }
+}
+
+provider "kubernetes" {
+  config_path = pathexpand(var.kube_config)
+  config_context = var.kube_context
+}

spark-image/Dockerfile

@@ -1,6 +1,7 @@
-FROM spark:3.5.1-scala2.12-java17-ubuntu
+# docker build -t dnet-spark:1.0.0 . && kind load docker-image -n dnet-data-platform dnet-spark:1.0.0
+FROM spark:3.5.3-scala2.12-java17-ubuntu
 
-user root
+USER root
 RUN curl https://repo1.maven.org/maven2/org/apache/hadoop/hadoop-aws/3.3.4/hadoop-aws-3.3.4.jar -o ${SPARK_HOME}/jars/hadoop-aws-3.3.4.jar
 RUN curl https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-bundle/1.12.262/aws-java-sdk-bundle-1.12.262.jar -o ${SPARK_HOME}/jars/aws-java-sdk-bundle-1.12.262.jar
 

variables.tf

@@ -44,3 +44,21 @@ variable "s3_key" {
 variable "s3_secret" {
   default = "minio123"
 }
+
+variable "minio_buckets" {
+  type    = list(map(string))
+  default = [
+    { name = "workflow-logs" },
+    { name = "binaries" },
+    { name = "graph" },
+  ]
+}
+
+variable "dag_branch_name" {
+  default = "master"
+}
+
+variable "dag_path_name" {
+  default = "workflow/dnet"
+}
+

workflow/dag_utils.py

@@ -0,0 +1,16 @@
+from airflow.hooks.base import BaseHook
+from airflow.providers.amazon.aws.hooks.s3 import S3Hook
+
+def get_bucket_name(context: dict, hook: S3Hook, param_name: str):
+    bucket_name = context["params"][param_name]
+    if not bucket_name:
+        bucket_name = hook.extra_args['bucket_name']
+    return bucket_name
+
+
+def get_default_bucket():
+    hook = S3Hook("s3_conn", transfer_config_args={'use_threads': False})
+    try:
+        return hook.service_config['bucket_name']
+    except KeyError:
+        return ''

workflow/dnet/S3_untar.py

@@ -0,0 +1,100 @@
+import os
+import tarfile
+import time
+from datetime import timedelta
+
+import pendulum
+from airflow.decorators import dag
+from airflow.decorators import task
+from airflow.models.param import Param
+from airflow.operators.python import get_current_context
+from airflow.providers.amazon.aws.hooks.s3 import S3Hook
+from botocore.exceptions import ClientError
+
+import dag_utils
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60))),
+}
+
+
+def load_file_obj_with_backoff(hook: S3Hook, fileobj, key: str, bucket: str, replace: bool) -> bool:
+    delay = 10  # initial delay
+    delay_incr = 10  # additional delay in each loop
+    max_delay = 60  # max delay of one loop. Total delay is (max_delay**2)/2
+
+    while delay < max_delay:
+        try:
+            return hook.load_file_obj(fileobj,
+                                      key,
+                                      bucket,
+                                      replace=replace)
+        except ClientError as err:
+            code = err.response.get('Error', {}).get('Code', '')
+            if code in ['NoSuchBucket']:
+                print(f"Error: {code}. Check s3path: s3://{bucket}/{key}")
+                raise err
+            time.sleep(delay)
+            delay += delay_incr
+
+
+@dag(
+    dag_id="s3_untar",
+    dag_display_name="S3 streaming untar",
+    start_date=pendulum.datetime(2021, 1, 1, tz="UTC"),
+    schedule=None,
+    catchup=False,
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+        "src_bucket": Param(dag_utils.get_default_bucket(), type='string',
+                            description="Override S3 default bucket for source"),
+        "src_key": Param("", type='string', description="File to untar"),
+        "dst_bucket": Param(dag_utils.get_default_bucket(), type='string',
+                            description="Override S3 default bucket for destination"),
+        "dst_key_prefix": Param("", type='string', description="Key prefix for unarchived files"),
+    },
+    tags=["s3", "tools"],
+)
+def s3_untar():
+    @task
+    def untar():
+        context = get_current_context()
+        hook = S3Hook(context["params"]["S3_CONN_ID"], transfer_config_args={'use_threads': False})
+        src_bucket = context['params']['src_bucket']
+        dst_bucket = context['params']['dst_bucket']
+        dst_key_prefix = os.path.normpath(context["params"]["dst_key_prefix"])
+
+        print(f"Existing keys with prefix:  {dst_key_prefix}/")
+        existing_keys = dict.fromkeys(hook.list_keys(bucket_name=dst_bucket,
+                                                     prefix=dst_key_prefix + "/"), 0)
+        for k in existing_keys.keys():
+            print(f"{k}")
+        s3_obj = hook.get_key(context["params"]["src_key"], bucket_name=src_bucket)
+
+        with tarfile.open(fileobj=s3_obj.get()["Body"], mode='r|*') as tar:
+            for member in tar:
+                dst_key = os.path.normpath(dst_key_prefix + "/" + member.name)
+                # Ignore directories, links, devices, fifos, etc.
+                if (not member.isfile()) or member.name.endswith('/'):
+                    print(f"Skipping {member.name}: is not a file")
+                    continue
+                if dst_key in existing_keys:
+                    print(f"Skipping {member.name}: already exists as {dst_key}")
+                    continue
+                print(f"Extracting {member.name} to {dst_key}")
+                fileobj = tar.extractfile(member)
+                fileobj.seekable = lambda: False
+                load_file_obj_with_backoff(hook, fileobj,
+                                           dst_key,
+                                           dst_bucket,
+                                           replace=True)
+
+    untar()
+
+
+s3_untar()

workflow/dnet/build_openaire_graph.py

@@ -0,0 +1,75 @@
+from __future__ import annotations
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.operators.trigger_dagrun import TriggerDagRunOperator
+
+import dag_utils
+
+
+@dag(
+    dag_id="build_openaire_graph",
+    dag_display_name="Build the OpenAIRE graph",
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection for S3 endpoint"),
+        "GRAPH_PATH": Param("s3a://graph/tmp/prod_provision/graph", type='string', description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir", type='string', description=""),
+        "IS_LOOKUP_URL": Param("http://services.openaire.eu:8280/is/services/isLookUp?wsdl", type='string',
+                               description=""),
+        "DEDUP_CONFIG_ID": Param("dedup-result-decisiontree-v4", type='string', description=""),
+        "ORCID_PATH": Param("s3a://graph/data/orcid_2023/tables", type='string', description="")
+    },
+    tags=["openaire"]
+)
+def build_new_graph():
+    chain(
+        TriggerDagRunOperator(
+            task_id="dedup",
+            task_display_name="Deduplicate Research Results",
+            trigger_dag_id="results_deduplication",
+            wait_for_completion=True,
+            conf={
+                "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+
+                "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["inference"],
+                "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["dedup"],
+                "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/dedup",
+                "IS_LOOKUP_URL": "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                "DEDUP_CONFIG_ID": "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}"
+            }
+        ),
+        TriggerDagRunOperator(
+            task_id="consistency",
+            task_display_name="Enforce Consistency of Graph",
+            trigger_dag_id="consistency_graph",
+            wait_for_completion=True,
+
+            conf={
+                "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+
+                "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["dedup"],
+                "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["consistency"],
+                "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/dedup",
+                "IS_LOOKUP_URL": "{{ dag_run.conf.get('IS_LOOKUP_URL') }}"
+            }
+        ),
+        TriggerDagRunOperator(
+            task_id="orcid_enrichment",
+            task_display_name="Enrich Graph with ORCID data",
+            trigger_dag_id="orcid_enrichment_graph",
+            wait_for_completion=True,
+
+            conf={
+                "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+
+                "ORCID_PATH": "{{ dag_run.conf.get('ORCID_PATH') }}",
+                "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["consistency"],
+                "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["orcid_enhancement"],
+                "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/orcid_enrichment"
+            }
+        )
+    )
+
+
+build_new_graph()

workflow/dnet/build_openaire_graph_incremental.py

@@ -0,0 +1,173 @@
+from __future__ import annotations
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.operators.trigger_dagrun import TriggerDagRunOperator
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+import dag_utils
+from spark_configurator import SparkConfigurator
+
+
+@dag(
+    dag_id="build_openaire_graph_incremental",
+    dag_display_name="Build the OpenAIRE graph incrementally",
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection for S3 endpoint"),
+        "GRAPH_PATH": Param("s3a://graph/tmp/prod_provision/graph", type='string', description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir", type='string', description=""),
+        "IS_LOOKUP_URL": Param("http://services.openaire.eu:8280/is/services/isLookUp?wsdl", type='string',
+                               description=""),
+        "DEDUP_CONFIG_ID": Param("dedup-result-decisiontree-v4", type='string', description=""),
+        "ORCID_PATH": Param("s3a://graph/data/orcid_2023/tables", type='string', description=""),
+        "DELTA_PATH": Param("s3a://graph/data/delta", type='string', description=""),
+    },
+    tags=["openaire"]
+)
+def build_new_graph():
+    chain(
+        SparkKubernetesOperator(
+            task_id='raw_graph',
+            task_display_name="Generate Raw Graph",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="rawgraph-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.graph.raw.CopyIncrementalOafSparkApplication",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--inputPath", "{{ dag_run.conf.get('DELTA_PATH') }}",
+                           "--graphOutputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["raw"]
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        ),
+
+        SparkKubernetesOperator(
+            task_id='grouped_graph',
+            task_display_name="Generate Grouped-by-id Graph",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="groupedgraph-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.merge.GroupEntitiesSparkJob",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--graphInputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["raw"],
+                           "--outputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["grouped"],
+                           "--checkpointPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}/grouped_entities",
+                           "--isLookupUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                           "--filterInvisible", "false"
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        ),
+
+        SparkKubernetesOperator(
+            task_id='copygroupedrels',
+            task_display_name="Copy relations to Grouped-by-id Graph",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="copygroupedrels-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.merge.CopyEntitiesSparkJob",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--graphInputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["raw"],
+                           "--outputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["grouped"],
+                           "--entities", "relation",
+                           "--format", "text"
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        ),
+
+        TriggerDagRunOperator(
+            task_id="clean_graph",
+            task_display_name="Clean Results",
+            trigger_dag_id="clean_graph",
+            wait_for_completion=True,
+            conf={
+                "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+
+                "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["grouped"],
+                "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["clean"],
+                "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/dedup",
+                "IS_LOOKUP_URL": "{{ dag_run.conf.get('IS_LOOKUP_URL') }}"
+            }
+        ),
+
+        SparkKubernetesOperator(
+            task_id='resolverels',
+            task_display_name="Resolve Relations",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="resolverels-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.graph.resolution.SparkResolveRelationById",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--graphBasePath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["clean"],
+                           "--targetPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["resolve"],
+                           "--relationPath",
+                           "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["consistency"] + "/relation"
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        ),
+
+        SparkKubernetesOperator(
+            task_id='copyresolveents',
+            task_display_name="Copy entities to Resolved Graph",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="copyresolveents-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.merge.CopyEntitiesSparkJob",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--graphInputPath",
+                           "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["clean"],
+                           "--outputPath", "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["resolve"],
+                           "--entities", ",".join([item for item in dag_utils.GRAPH_ENTITIES if item != "relation"]),
+                           "--format", "text"
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        )
+
+        # , TriggerDagRunOperator(
+        #     task_id="dedup",
+        #     task_display_name="Deduplicate Research Results",
+        #     trigger_dag_id="results_deduplication",
+        #     wait_for_completion=True,
+        #     conf={
+        #         "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+        #
+        #         "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["inference"],
+        #         "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["dedup"],
+        #         "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/dedup",
+        #         "IS_LOOKUP_URL": "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+        #         "DEDUP_CONFIG_ID": "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}"
+        #     }
+        # ),
+        # TriggerDagRunOperator(
+        #     task_id="consistency",
+        #     task_display_name="Enforce Consistency of Graph",
+        #     trigger_dag_id="consistency_graph",
+        #     wait_for_completion=True,
+        #
+        #     conf={
+        #         "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+        #
+        #         "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["dedup"],
+        #         "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["consistency"],
+        #         "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/dedup",
+        #         "IS_LOOKUP_URL": "{{ dag_run.conf.get('IS_LOOKUP_URL') }}"
+        #     }
+        # ),
+        # TriggerDagRunOperator(
+        #     task_id="orcid_enrichment",
+        #     task_display_name="Enrich Graph with ORCID data",
+        #     trigger_dag_id="orcid_enrichment_graph",
+        #     wait_for_completion=True,
+        #
+        #     conf={
+        #         "S3_CONN_ID": "{{ dag_run.conf.get('S3_CONN_ID') }}",
+        #
+        #         "ORCID_PATH": "{{ dag_run.conf.get('ORCID_PATH') }}",
+        #         "INPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["consistency"],
+        #         "OUTPUT_PATH": "{{ dag_run.conf.get('GRAPH_PATH') }}/" + dag_utils.BUILD_PHASES["orcid_enhancement"],
+        #         "WRKDIR_PATH": "{{ dag_run.conf.get('WRKDIR_PATH') }}/orcid_enrichment"
+        #     }
+        # )
+    )
+
+
+build_new_graph()

workflow/dnet/clean.py

@@ -0,0 +1,109 @@
+import os
+from datetime import timedelta
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+import dag_utils
+from spark_configurator import SparkConfigurator
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60)))
+}
+
+
+@dag(
+    dag_id="clean_graph",
+    dag_display_name="Cleaning of Graph",
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+        "POSTGRES_CONN_ID": Param("postgres_conn", type='string', description=""),
+
+        "INPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/02_graph_grouped", type='string', description=""),
+        "OUTPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/03_graph_cleaned", type='string', description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir/clean", type='string', description=""),
+        "IS_LOOKUP_URL": Param("http://services.openaire.eu:8280/is/services/isLookUp?wsdl", type='string',
+                               description=""),
+        "COUNTRY": Param("NL", type='string', description=""),
+        "SHOULD_CLEAN": Param("false", type='string', description=""),
+        "CONTEXT_ID": Param("sobigdata", type='string', description=""),
+        "VERIFY_PARAM": Param("gcube", type='string', description=""),
+        "VERIFY_COUNTRY_PARAM": Param("10.17632;10.5061", type='string', description=""),
+        "COLLECTED_FROM": Param("NARCIS", type='string', description="")
+    },
+    tags=["openaire"]
+)
+def clean_graph_dag():
+    getdatasourcefromcountry = SparkKubernetesOperator(
+        task_id='getdatasourcefromcountry',
+        task_display_name="Get datasource from Country",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="getdatasourcefromcountry-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.graph.clean.GetDatasourceFromCountry",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--inputPath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--country", "{{ dag_run.conf.get('COUNTRY') }}",
+                       "--workingDir", "{{ dag_run.conf.get('WRKDIR_PATH') }}/working/hostedby"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    masterduplicateaction = SparkKubernetesOperator(
+        task_id='masterduplicateaction',
+        task_display_name="MasterDuplicateAction",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="masterduplicateaction-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.graph.clean.MasterDuplicateAction",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--hdfsNameNode", "s3a://graph/",
+                       "--hdfsPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}/masterduplicate",
+                       "--postgresUrl", "jdbc:postgresql://{{ conn.get(dag_run.conf.get('POSTGRES_CONN_ID')).host }}:{{ conn.get(dag_run.conf.get('POSTGRES_CONN_ID')).port }}/dnet_openaireplus",
+                       "--postgresUser", "{{ conn.get(dag_run.conf.get('POSTGRES_CONN_ID')).login }}",
+                       "--postgresPassword", "{{ conn.get(dag_run.conf.get('POSTGRES_CONN_ID')).password }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    clean_tasks = []
+    for entity in dag_utils.GRAPH_ENTITIES:
+        clean_tasks.append(SparkKubernetesOperator(
+            task_id='cleansparkjob_' + entity,
+            task_display_name="Clean " + entity,
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="cleansparkjob-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=[
+                    "--inputPath", "{{ dag_run.conf.get('INPUT_PATH') }}/" + entity,
+                    "--outputPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}/" + entity,
+                    "--graphTableClassName", dag_utils.GRAPH_ENTITIES_CLASS_NAMES[entity],
+                    "--isLookupUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                    "--contextId", "{{ dag_run.conf.get('CONTEXT_ID') }}",
+                    "--verifyParam", "{{ dag_run.conf.get('VERIFY_PARAM') }}",
+                    "--country", "{{ dag_run.conf.get('COUNTRY') }}",
+                    "--verifyCountryParam", "{{ dag_run.conf.get('VERIFY_COUNTRY_PARAM') }}",
+                    "--hostedBy", "{{ dag_run.conf.get('WRKDIR_PATH') }}/working/hostedby",
+                    "--collectedfrom", "{{ dag_run.conf.get('COLLECTED_FROM') }}",
+                    "--masterDuplicatePath", "{{ dag_run.conf.get('WRKDIR_PATH') }}/masterduplicate",
+                    "--deepClean", "{{ dag_run.conf.get('SHOULD_CLEAN') }}"
+
+                ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        ))
+
+    chain(getdatasourcefromcountry,
+          #masterduplicateaction,
+          clean_tasks)
+
+
+clean_graph_dag()

workflow/dnet/consistency.py

@@ -0,0 +1,71 @@
+import os
+from datetime import timedelta
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+from spark_configurator import SparkConfigurator
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60)))
+}
+
+
+@dag(
+    dag_id="consistency_graph",
+    dag_display_name="Enforce Consistency of Graph",
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+
+        "INPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/06_graph_dedup", type='string', description=""),
+        "OUTPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/07_graph_consistent", type='string', description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir/dedup", type='string', description=""),
+        "IS_LOOKUP_URL": Param("http://services.openaire.eu:8280/is/services/isLookUp?wsdl", type='string',
+                               description="")
+    },
+    tags=["openaire"]
+)
+def consistency_graph_dag():
+    propagate_rel = SparkKubernetesOperator(
+        task_id='PropagateRelation',
+        task_display_name="Propagate Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="propagaterels-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkPropagateRelation",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--graphOutputPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    group_entities = SparkKubernetesOperator(
+        task_id='GroupEntities',
+        task_display_name="Group results by id",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="groupentities-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.merge.GroupEntitiesSparkJob",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphInputPath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--checkpointPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}/grouped_entities",
+                       "--outputPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}",
+                       "--isLookupUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--filterInvisible", "true"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    chain(propagate_rel, group_entities)
+
+
+consistency_graph_dag()

workflow/dnet/dag_utils.py

@@ -0,0 +1,44 @@
+from airflow.hooks.base import BaseHook
+from airflow.providers.amazon.aws.hooks.s3 import S3Hook
+
+BUILD_PHASES = {
+    "raw": "01_graph_raw",
+    "grouped": "02_graph_grouped",
+    "clean": "03_graph_cleaned",
+    "resolve": "04_graph_resolved",
+
+    "inference": "05_graph_inferred",
+    "dedup": "06_graph_dedup",
+    "consistency": "07_graph_consistent",
+    "enrichment": "08_graph_dedup_enriched", # actionset
+    "orcid_enhancement": "09_graph_orcid_enriched"
+}
+
+def get_bucket_name(context: dict, hook: S3Hook, param_name: str):
+    bucket_name = context["params"][param_name]
+    if not bucket_name:
+        bucket_name = hook.extra_args['bucket_name']
+    return bucket_name
+
+
+def get_default_bucket():
+    hook = S3Hook("s3_conn", transfer_config_args={'use_threads': False})
+    try:
+        return hook.service_config['bucket_name']
+    except KeyError:
+        return ''
+
+
+GRAPH_ENTITIES = ["publication", "dataset", "otherresearchproduct", "software", "datasource", "organization", "project", "relation"]
+
+
+GRAPH_ENTITIES_CLASS_NAMES = {
+    "publication": "eu.dnetlib.dhp.schema.oaf.Publication",
+    "dataset": "eu.dnetlib.dhp.schema.oaf.Dataset",
+    "otherresearchproduct": "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
+    "software": "eu.dnetlib.dhp.schema.oaf.Software",
+    "datasource": "eu.dnetlib.dhp.schema.oaf.Datasource",
+    "organization": "eu.dnetlib.dhp.schema.oaf.Organization",
+    "project": "eu.dnetlib.dhp.schema.oaf.Project",
+    "relation": "eu.dnetlib.dhp.schema.oaf.Relation"
+}

workflow/dnet/dedup.py

@@ -0,0 +1,173 @@
+import os
+from datetime import timedelta
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+from spark_configurator import SparkConfigurator
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60)))
+}
+
+
+@dag(
+    dag_id="results_deduplication",
+    dag_display_name="Deduplicate Research Results",
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+
+        "INPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/05_graph_inferred", type='string', description=""),
+        "OUTPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/06_graph_dedup", type='string', description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir/dedup", type='string', description=""),
+        "IS_LOOKUP_URL": Param("http://services.openaire.eu:8280/is/services/isLookUp?wsdl", type='string',
+                               description=""),
+        "DEDUP_CONFIG_ID": Param("dedup-result-decisiontree-v4", type='string', description="")
+    },
+    tags=["openaire"]
+)
+def results_deduplication_dag():
+    simrel = SparkKubernetesOperator(
+        task_id='CreateSimRel',
+        task_display_name="Create Similarity Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="createsimrels-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--numPartitions", "64"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    whitelist = SparkKubernetesOperator(
+        task_id='WhitelistSimRels',
+        task_display_name="Add Whitelist Similarity Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="whitelistsimrels-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkWhitelistSimRels",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--whiteListPath", "s3a://graph/data/dedup/whitelist_prod",  # TODO: copy!
+                       "--numPartitions", "64"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    createmergerel = SparkKubernetesOperator(
+        task_id='CreateMergeRels',
+        task_display_name="Create Merge Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="createmergerels-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--cutConnectedComponent", "200",
+                       "--hiveMetastoreUris", "",
+                       "--pivotHistoryDatabase", ""
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    creatededuprecord = SparkKubernetesOperator(
+        task_id='CreateDedupRecord',
+        task_display_name="Create Dedup Record",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="creatededuprecord-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCreateDedupRecord",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    copyopenorgsmergerel = SparkKubernetesOperator(
+        task_id='CopyOpenorgsMergeRels',
+        task_display_name="Copy Openorgs Merge Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="copyopenorgsmergerels-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCopyOpenorgsMergeRels",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--numPartitions", "64"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    createorgsdeduprecord = SparkKubernetesOperator(
+        task_id='CreateOrgsDedupRecord',
+        task_display_name="Create Organizations Dedup Records",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="createorgsdeduprecord-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCreateOrgsDedupRecord",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--isLookUpUrl", "{{ dag_run.conf.get('IS_LOOKUP_URL') }}",
+                       "--actionSetId", "{{ dag_run.conf.get('DEDUP_CONFIG_ID') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    updateentity = SparkKubernetesOperator(
+        task_id='UpdateEntity',
+        task_display_name="Update Entity",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="updateentity-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkUpdateEntity",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--dedupGraphPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    copyrelations = SparkKubernetesOperator(
+        task_id='copyRelations',
+        task_display_name="Copy Non-Openorgs Relations",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="copyrelations-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.oa.dedup.SparkCopyRelationsNoOpenorgs",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--graphBasePath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--workingPath", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--dedupGraphPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    chain(simrel, whitelist, createmergerel, creatededuprecord, copyopenorgsmergerel, createorgsdeduprecord, updateentity, copyrelations)
+
+
+results_deduplication_dag()

workflow/dnet/orcid_enrich.py

@@ -0,0 +1,70 @@
+import os
+from datetime import timedelta
+
+from airflow.decorators import dag
+from airflow.models.baseoperator import chain
+from airflow.models.param import Param
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+from spark_configurator import SparkConfigurator
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60)))
+}
+
+
+@dag(
+    dag_id="orcid_enrichment_graph",
+    dag_display_name="Enrich Graph with ORCID data",
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+        "ORCID_PATH": Param("s3a://graph/data/orcid_2023/tables", type='string', description=""),
+        "INPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/07_graph_consistent", type='string', description=""),
+        "OUTPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/09_graph_orcid_enriched", type='string',
+                             description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir/orcid_enrichment", type='string',
+                             description="")
+    },
+    tags=["openaire"]
+)
+def orcid_enrichment_dag():
+    chain(SparkKubernetesOperator(
+        task_id='EnrichGraphWithOrcidAuthors',
+        task_display_name='Enrich Authors with ORCID',
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="orcidenrich-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.enrich.orcid.SparkEnrichGraphWithOrcidAuthors",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--orcidPath", "{{ dag_run.conf.get('ORCID_PATH') }}",
+                       "--graphPath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--targetPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}",
+                       "--workingDir", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--master", ""
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    ),
+        SparkKubernetesOperator(
+            task_id='copyorcidenrichrels',
+            task_display_name="Copy relations to ORCID Enriched graph",
+            namespace='dnet-spark-jobs',
+            template_spec=SparkConfigurator(
+                name="copygroupedrels-{{ ds }}-{{ task_instance.try_number }}",
+                mainClass="eu.dnetlib.dhp.oa.merge.CopyEntitiesSparkJob",
+                jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+                arguments=["--graphInputPath", "{{ dag_run.conf.get('INPUT_PATH') }}/",
+                           "--outputPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}/",
+                           "--entities", "relation",
+                           "--format", "text"
+                           ]).get_configuration(),
+            kubernetes_conn_id="kubernetes_default"
+        )
+    )
+
+
+orcid_enrichment_dag()

workflow/dnet/orcid_propagate.py

@@ -0,0 +1,55 @@
+import os
+from datetime import timedelta
+
+from airflow.decorators import dag
+from airflow.models.param import Param
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+
+from spark_configurator import SparkConfigurator
+
+EXECUTION_TIMEOUT = int(os.getenv("EXECUTION_TIMEOUT", 6))
+
+default_args = {
+    "execution_timeout": timedelta(days=EXECUTION_TIMEOUT),
+    "retries": int(os.getenv("DEFAULT_TASK_RETRIES", 1)),
+    "retry_delay": timedelta(seconds=int(os.getenv("DEFAULT_RETRY_DELAY_SECONDS", 60)))
+}
+
+
+@dag(
+    dag_id="orcid_propagation_graph",
+    dag_display_name="Propagate ORCID data in graph",
+    default_args=default_args,
+    params={
+        "S3_CONN_ID": Param("s3_conn", type='string', description="Airflow connection of S3 endpoint"),
+        "ORCID_PATH": Param("s3a://graph/tmp/prod_provision/graph/09_graph_orcid_enriched", type='string', description=""),
+        "INPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/09_graph_orcid_enriched", type='string', description=""),
+        "OUTPUT_PATH": Param("s3a://graph/tmp/prod_provision/graph/10_graph_propagated", type='string',
+                             description=""),
+        "WRKDIR_PATH": Param("s3a://graph/tmp/prod_provision/working_dir/orcid_propagation", type='string',
+                             description="")
+    },
+    tags=["openaire"]
+)
+def orcid_propagation_dag():
+    orcid_propagate = SparkKubernetesOperator(
+        task_id='PropagateGraphWithOrcid',
+        task_display_name="Propagate ORCID data",
+        namespace='dnet-spark-jobs',
+        template_spec=SparkConfigurator(
+            name="orcidpropagate-{{ ds }}-{{ task_instance.try_number }}",
+            mainClass="eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkPropagateOrcidAuthor",
+            jarLocation='s3a://binaries/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+            arguments=["--orcidPath", "{{ dag_run.conf.get('ORCID_PATH') }}",
+                       "--graphPath", "{{ dag_run.conf.get('INPUT_PATH') }}",
+                       "--targetPath", "{{ dag_run.conf.get('OUTPUT_PATH') }}",
+                       "--workingDir", "{{ dag_run.conf.get('WRKDIR_PATH') }}",
+                       "--matchingSource", "graph"
+                       ]).get_configuration(),
+        kubernetes_conn_id="kubernetes_default"
+    )
+
+    orcid_propagate
+
+
+orcid_propagation_dag()

workflow/dnet/run_spark.py

@@ -0,0 +1,87 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+"""
+This is an example DAG which uses SparkKubernetesOperator and SparkKubernetesSensor.
+In this example, we create two tasks which execute sequentially.
+The first task is to submit sparkApplication on Kubernetes cluster(the example uses spark-pi application).
+and the second task is to check the final state of the sparkApplication that submitted in the first state.
+
+Spark-on-k8s operator is required to be already installed on Kubernetes
+https://github.com/GoogleCloudPlatform/spark-on-k8s-operator
+"""
+
+from os import path
+from datetime import timedelta, datetime
+from spark_configurator import SparkConfigurator
+
+# [START import_module]
+# The DAG object; we'll need this to instantiate a DAG
+from airflow import DAG
+# Operators; we need this to operate!
+from airflow.providers.cncf.kubernetes.operators.spark_kubernetes import SparkKubernetesOperator
+from airflow.providers.cncf.kubernetes.sensors.spark_kubernetes import SparkKubernetesSensor
+from airflow.utils.dates import days_ago
+
+
+# [END import_module]
+
+# [START default_args]
+# These args will get passed on to each operator
+# You can override them on a per-task basis during operator initialization
+default_args = {
+    'owner': 'airflow',
+    'depends_on_past': False,
+    'start_date': days_ago(1),
+    'email': ['airflow@example.com'],
+    'email_on_failure': False,
+    'email_on_retry': False,
+    'max_active_runs': 1,
+    'retries': 3
+}
+
+spec =SparkConfigurator(
+    name="spark-scholix-{{ ds }}-{{ task_instance.try_number }}", 
+        mainClass="eu.dnetlib.dhp.sx.graph.SparkCreateScholexplorerDump", 
+        jarLocation = 's3a://deps/dhp-shade-package-1.2.5-SNAPSHOT.jar',
+        arguments =[ "--sourcePath", "s3a://raw-graph/01", "--targetPath", "s3a://scholix"],\
+        executor_cores=4,
+        executor_memory="4G", 
+        executor_instances=1, 
+        executor_memoryOverhead="3G").get_configuration()
+
+dag = DAG(
+    'spark_run_test',
+    default_args=default_args,
+    schedule_interval=None,
+    tags=['example', 'spark']
+)
+
+submit = SparkKubernetesOperator(
+    task_id='spark-scholix',
+    namespace='dnet-spark-jobs',
+    template_spec=spec,
+    kubernetes_conn_id="kubernetes_default",
+    #    do_xcom_push=True,
+    #    delete_on_termination=True,
+    # base_container_name="spark-kubernetes-driver",
+    dag=dag
+)
+
+
+
+submit

workflow/dnet/spark_configurator.py

@@ -0,0 +1,106 @@
+
+class SparkConfigurator:
+    def __init__(self,
+                 name, 
+                 mainClass,
+                 jarLocation:str,
+                 arguments,
+                 apiVersion=None,
+                 namespace="dnet-spark-jobs",
+                 image= "dnet-spark:1.0.0",
+                 driver_cores=1,
+                 driver_memory='1G',
+                 executor_cores=8,
+                 executor_memory="16G",
+                 executor_memoryOverhead="8G",
+                 executor_instances=1
+                 ) -> None:
+        if apiVersion:
+            self.apiVersion = apiVersion
+        else:
+            self.apiVersion = "sparkoperator.k8s.io/v1beta2"
+        self.namespace= namespace
+        self.name = name
+        self.image= image
+        self.mainClass = mainClass
+        self.jarLocation = jarLocation
+        self.arguments= arguments
+        self.s3Configuration =  {
+                    "spark.driver.extraJavaOptions": "-Divy.cache.dir=/tmp -Dcom.amazonaws.sdk.disableCertChecking=true -Dcom.cloudera.com.amazonaws.sdk.disableCertChecking=true",
+                    "spark.executor.extraJavaOptions": "-Divy.cache.dir=/tmp -Dcom.amazonaws.sdk.disableCertChecking=true -Dcom.cloudera.com.amazonaws.sdk.disableCertChecking=true",
+                    "spark.hadoop.fs.defaultFS": "s3a://graph",
+                    "spark.hadoop.fs.s3a.access.key": "minio",
+                    "spark.hadoop.fs.s3a.secret.key": "minio123",
+                    "spark.hadoop.fs.s3a.endpoint": "https://minio.dnet-minio-tenant.svc.cluster.local",
+                    "spark.hadoop.fs.s3a.impl": "org.apache.hadoop.fs.s3a.S3AFileSystem",
+                    "spark.hadoop.fs.s3a.path.style.access": "true",
+                    "spark.hadoop.fs.s3a.attempts.maximum": "1",
+                    "spark.hadoop.fs.s3a.connection.establish.timeout": "5000",
+                    "spark.hadoop.fs.s3a.connection.timeout": "10001",
+                    "spark.hadoop.fs.s3a.connection.ssl.enabled": "false",
+                    "com.amazonaws.sdk.disableCertChecking": "true",
+                    "com.cloudera.com.amazonaws.sdk.disableCertChecking": "true",
+                    "fs.s3a.connection.ssl.strictverify": "false",
+                    "fs.s3a.connection.ssl.enabled": "false",
+                    "fs.s3a.ssl.enabled": "false",
+                    "spark.hadoop.fs.s3a.ssl.enabled": "false"
+                }
+        self.sparkResoruceConf= {
+            'driver_cores':driver_cores,
+            'driver_memory':driver_memory,
+            'executor_cores':executor_cores,
+            'executor_memory':executor_memory,
+            'executor_instances':executor_instances,
+            'memoryOverhead':executor_memoryOverhead 
+            
+        }
+
+    def get_configuration(self) -> dict:
+        return {
+            "apiVersion": self.apiVersion,
+            "kind": "SparkApplication",
+            "metadata": {
+                "name": self.name,
+                "namespace": self.namespace
+            },
+            "spec": {
+                "type": "Scala",
+                "mode": "cluster",
+                "image":self.image,
+                "imagePullPolicy": "IfNotPresent",
+                "mainClass": self.mainClass,
+                "mainApplicationFile": self.jarLocation,
+                "deps": {
+                    "jar": [self.jarLocation]
+                },
+                "arguments": self.arguments,
+                "sparkVersion": "3.5.3",
+                "sparkConf": self.s3Configuration,
+                "restartPolicy": {
+                    "type": "Never"
+                },
+                "dynamicAllocation": {
+                    "enables": True
+                },
+                "driver": {
+                    "javaOptions": "-Dcom.amazonaws.sdk.disableCertChecking=true -Dcom.cloudera.com.amazonaws.sdk.disableCertChecking=true",
+                    "cores": self.sparkResoruceConf['driver_cores'],
+                    "coreLimit": "1200m",
+                    "memory": self.sparkResoruceConf['driver_memory'],
+                    "labels": {
+                        "version": "3.5.3"
+                    },
+                    "serviceAccount": "spark"
+                },
+                "executor": {
+                    "javaOptions": "-Dcom.amazonaws.sdk.disableCertChecking=true  -Dcom.cloudera.com.amazonaws.sdk.disableCertChecking=true",
+                    "cores": self.sparkResoruceConf['executor_cores'],
+                    "memoryOverhead": self.sparkResoruceConf['memoryOverhead'],
+                    "memory": self.sparkResoruceConf['executor_memory'],
+                    "instances": self.sparkResoruceConf['executor_instances'],
+                    "labels": {
+                        "version": "3.5.3"
+                    }
+                }
+            }
+        }