bioentities-preprocess/main.py

24 lines
652 B
Python

from pdb.pdb_download import PDBDownloader
from pdb.pdb_metadata_extractor import MetadataExctractor
from pdb.pdb_validator import validate
from uniprot.download import UniprotSwissDownloader
from uniprot.metadata import MetadataExctractor as ME
if __name__ == '__main__':
u = UniprotSwissDownloader()
#u.download()
k = ME()
k.extract_metadata()
# p = PDBDownloader()
# p.get_file_to_downloads(max_item=4)
# m = MetadataExctractor()
# m.extract_metadata()
# error, valid, total, error_record = validate()
# print(error)
# print(f"Valid {valid}/{total}")
# print(f"Error {error_record}/{total}")