30 lines
924 B
Python
30 lines
924 B
Python
from pdb.pdb_download import PDBDownloader
|
|
from pdb.pdb_metadata_extractor import MetadataExctractor
|
|
from pdb.pdb_validator import validate
|
|
from uniprot.download import UniprotSwissDownloader
|
|
from uniprot.metadata import MetadataExctractor as ME
|
|
from uniprot.uniprot_validator import validate as validate_uniprot
|
|
|
|
if __name__ == '__main__':
|
|
print("UNIPROT -PREPROCESSING")
|
|
u = UniprotSwissDownloader()
|
|
u.download()
|
|
k = ME()
|
|
k.extract_metadata()
|
|
error, valid, total, error_record = validate_uniprot()
|
|
print(error)
|
|
print(f"Valid {valid}/{total}")
|
|
print(f"Error {error_record}/{total}")
|
|
print("PDB -PREPROCESSING")
|
|
p = PDBDownloader()
|
|
p.get_file_to_downloads(max_item=4)
|
|
m = MetadataExctractor()
|
|
m.extract_metadata()
|
|
error, valid, total, error_record = validate()
|
|
print(error)
|
|
print(f"Valid {valid}/{total}")
|
|
print(f"Error {error_record}/{total}")
|
|
|
|
|
|
|