import json import gzip import glob def validate(input_path="uniprot_metadata") : error = {} valid = 0 total = 0 error_record = 0 for i in glob.glob(f"{input_path}/dump*.gz"): with gzip.open(i) as f: for line in f: data = json.loads(line.decode("utf-8")) e = False if "dates" not in data or data['dates'] is None or len(data['dates']) ==0: error['MissingDate'] = error.get('MissingDate', 0)+1 e= True if 'pid' not in data and len(data['pid'])==0: error['MissingLinks'] = error.get('MissingLinks', 0)+1 e= True if "title" not in data or data['title'] is None: error['MissingTitle'] = error.get('MissingTitle', 0)+1 e= True if 'subjects' not in data or data['subjects'] is None: error['MissingKeywords'] = error.get('MissingKeywords', 0)+1 total += 1 if e: error_record +=1 else: valid +=1 return (error, valid, total, error_record)