bioentities-preprocess/main.py

from pdb.pdb_download import PDBDownloader
from pdb.pdb_metadata_extractor import MetadataExctractor
from pdb.pdb_validator import validate
from uniprot.download import UniprotSwissDownloader
from uniprot.metadata import MetadataExctractor as ME
from uniprot.uniprot_validator import validate as validate_uniprot

if __name__ == '__main__':
    u = UniprotSwissDownloader()
    #u.download()
    k = ME()
    error, valid, total, error_record = validate_uniprot()
    print(error)
    print(f"Valid {valid}/{total}")
    print(f"Error {error_record}/{total}")
    # k.extract_metadata()
    

    # p = PDBDownloader()
    # p.get_file_to_downloads(max_item=4)
    # m = MetadataExctractor()
    # m.extract_metadata()
    # error, valid, total, error_record = validate()
    # print(error)
    # print(f"Valid {valid}/{total}")
    # print(f"Error {error_record}/{total}")