AriadnePlus/dnet-ariadneplus-publisher/src/main/java/eu/dnetlib/ariadneplus/jrr/JRRPublisher.java

package eu.dnetlib.ariadneplus.jrr;

import java.io.IOException;
import java.net.URISyntaxException;
import javax.annotation.PostConstruct;

import eu.dnetlib.ariadneplus.CRM;
import eu.dnetlib.ariadneplus.CRMdig;
import eu.dnetlib.ariadneplus.CRMpe;
import eu.dnetlib.ariadneplus.catalogue.CatalogueRegistrator;
import eu.dnetlib.ariadneplus.publisher.AriadnePlusPublisherException;
import eu.dnetlib.ariadneplus.rdf.RecordParserHelper;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.jena.ontology.OntModel;
import org.apache.jena.ontology.OntModelSpec;
import org.apache.jena.rdf.model.*;
import org.apache.jena.vocabulary.RDF;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;


/**
 * Created by Alessia Bardi on 25/02/2018.
 *
 * publish on Gcube registry and catalogue.
 *
 *
 * @author Alessia Bardi
 */
@Component
public class JRRPublisher {

	private static final Log log = LogFactory.getLog(JRRPublisher.class);
	private OntModel baseModel;

	@Autowired
	private CatalogueRegistrator catalogueRegistrator;
	//@Autowired
	//private GCubeResourceRegistrator gCubeResourceRegistrator;
	@Autowired
	private RecordParserHelper recordParserHelper;

	@PostConstruct
	public void init(){
		baseModel = ModelFactory.createOntologyModel(OntModelSpec.RDFS_MEM_TRANS_INF);
		baseModel.read(CRMpe.RDFS_URL);
		baseModel.read(CRM.RDFS_URL);
		baseModel.read(CRMdig.RDFS_URL);
	}

	public void register(final String record)
			throws AriadnePlusPublisherException, IOException, URISyntaxException, InterruptedException {
		String id = recordParserHelper.getObjIdentifier(record);
		String datasourceName = recordParserHelper.getDatasourceName(record);
		//objIdentifier contains the subject URI used to get the RDF: that is the only resource we have to register when processing this rdf file!
		log.debug("REGISTERING ON JRR: "+id);
		String rdfRecord = recordParserHelper.getRDF(record);
		InfModel model = loadBaseModel();
		model.read(IOUtils.toInputStream(rdfRecord), CRMpe.NS, "RDF/XML");
		register(model, id, datasourceName);
	}


	protected void register(final Model model, final String resourceURI, final String datasourceName)
			throws AriadnePlusPublisherException, IOException, URISyntaxException, InterruptedException {
		Resource rdfResource = model.getResource(resourceURI);
		if (rdfResource == null) {
			log.error("UNEXPECTED NULL rdfResource with resourceURI " + resourceURI + ". I am skipping it, but you should check!");
		} else {
			//call the correct register method based on the resource type
			//we skip everything that is not Software, Actor, Service, Dataset, Curation Plan and Project: other entities are in fact source of metadata for them
			////base types are {Project, Service, Actors, Datasets, Software, Physical Collections, Standards} i.e. {PE35_Project, PE1_Service, E39_Actor, PE18_Dataset, D14_Software, E78_Collection, E29_Design_or_Procedure)
			if (rdfResource.hasProperty(RDF.type, CRM.E39_Actor)) registerRDFResource(rdfResource, CRM.E39_Actor, datasourceName);
			else {
				if (rdfResource.hasProperty(RDF.type, CRMpe.PE35_Project)) registerRDFResource(rdfResource, CRMpe.PE35_Project, datasourceName);
				else {
					if (rdfResource.hasProperty(RDF.type, CRM.E29_Design_or_Procedure)) registerRDFResource(rdfResource, CRM.E29_Design_or_Procedure, datasourceName);
					else {
						if (rdfResource.hasProperty(RDF.type, CRMdig.D14_Software)) registerRDFResource(rdfResource, CRMdig.D14_Software, datasourceName);
						else {
							if (rdfResource.hasProperty(RDF.type, CRMpe.PE18_Dataset)) registerRDFResource(rdfResource, CRMpe.PE18_Dataset, datasourceName);
							else {
								if (rdfResource.hasProperty(RDF.type, CRM.E78_Collection)) registerRDFResource(rdfResource, CRM.E78_Collection, datasourceName);
								else {
									if (rdfResource.hasProperty(RDF.type, CRMpe.PE1_Service)) registerRDFResource(rdfResource, CRMpe.PE1_Service, datasourceName);
									else {
										log.debug("Skipping " + resourceURI + " because of its type");
									}
								}
							}
						}
					}
				}
			}
		}
	}

	protected boolean registerRDFResource(final Resource rdfResource, final Resource type, final String datasourceName)
			throws AriadnePlusPublisherException, IOException, URISyntaxException, InterruptedException {
		String resURI = rdfResource.getURI();
		if (!resURI.startsWith("http")) {
			//this is something George said: if it has no http URI, then it is not to be considered relevant by itself
			log.info("Resource " + resURI + " skipped: URI does not start with http");
			return false;
		}
		else {
				String uuid = registerOnCatalogue(rdfResource, type, datasourceName);
				if(StringUtils.isNotBlank(uuid)){
					//TODO: let's skip the registration on the registry for now.
					//registerOnRegistry(rdfResource, uuid, type);
					return true;
				}
				else{
					log.warn("Got blank uuid when registering "+resURI+": skipping registration on the registry");
					return false;
				}
			}
		}

	/**
	 * Register resource of the given type on the catalogue
	 * @param rdfResource
	 * @param type
	 * @return the catalogue uuid
	 * @throws IOException
	 */
	protected String registerOnCatalogue(final Resource rdfResource, final Resource type, final String datasourceName)
			throws AriadnePlusPublisherException, IOException, URISyntaxException, InterruptedException {
		return catalogueRegistrator.register(rdfResource, type, datasourceName);
	}

	/*
	protected void registerOnRegistry(final Resource rdfResource, final String uuid, final Resource type)
			throws AriadnePlusPublisherException, ResourceRegistryException, IOException {
			gCubeResourceRegistrator.register(rdfResource, uuid, type);
	}
	*/

	protected InfModel loadBaseModel() {
		return ModelFactory.createRDFSModel(baseModel);
	}


}