439 lines
18 KiB
Java
439 lines
18 KiB
Java
/**
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*
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*/
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package eu.dnetlib.ariadneplus;
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import eu.dnetlib.ariadneplus.elasticsearch.BulkUpload;
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import eu.dnetlib.ariadneplus.reader.ResourceManager;
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import eu.dnetlib.ariadneplus.reader.RunSPARQLQueryService;
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import eu.dnetlib.ariadneplus.reader.json.ParseRDFJSON;
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import org.apache.commons.io.IOUtils;
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import org.eclipse.rdf4j.model.Resource;
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import org.eclipse.rdf4j.repository.Repository;
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import org.eclipse.rdf4j.repository.RepositoryConnection;
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import org.eclipse.rdf4j.repository.RepositoryResult;
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import org.eclipse.rdf4j.repository.manager.RemoteRepositoryManager;
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import org.junit.Ignore;
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import org.junit.Test;
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import org.springframework.core.io.ClassPathResource;
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import java.nio.charset.StandardCharsets;
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import java.util.Arrays;
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import java.util.List;
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import java.util.Properties;
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/**
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* @author enrico.ottonello
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*
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*/
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//@Ignore
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public class GraphDbReaderAndESIndexTest {
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private RunSPARQLQueryService runSPQRLQuery;
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@Test
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// @Ignore
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public void uploadAMCRFieldworkTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/AIS%20CR/E61E0F4E-268F-39E4-8EDB-A431AFC505AA";
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String datasource = "amcr";
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String collectionId = "oai";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadAMCRFieldworkEventOnlyPeriodoTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/AIS%20CR/849F814F-5892-3408-AD5E-904938B4492A";
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String datasource = "amcr";
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String collectionId = "oai";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadAMCRDocumentTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/AIS%20CR/FC59581D-DC3A-31DA-922A-98DE764F3D76";
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String datasource = "amcr";
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String collectionId = "oai";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadAMCRSiteTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/AIS%20CR/3C7EC936-A7CA-3720-B3DC-413A25754FD4";
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String datasource = "amcr";
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String collectionId = "oai";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadAMCRIndividualFindTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/AIS%20CR/98D717C4-410F-35C6-8072-FABA7686B4A3";
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String datasource = "amcr";
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String collectionId = "oai";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADSRecordWithNativeFromUntilTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/3C3C7A86-FF09-3431-95B1-B9A4AA8293AF";
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String datasource = "ads";
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String collectionId = "1970";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADSRecordWithoutNativeFromUntilTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/DF5F27D3-C877-3F23-9EAA-3776362363AA";
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String datasource = "ads";
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String collectionId = "304";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadZbivaRecordSpatialTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/ZRC-SAZU-Zbiva/B34517C6-8D94-3A02-B461-08522F958479";
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String datasource = "zrc_zbiva";
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String collectionId = "sites";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadHNMCollectionSpatialTest() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/HNM/5A7A4257-EE73-31F9-9F74-BADB371555F5";
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String datasource = "hnm";
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String collectionId = "hnmad";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadHNMCollectionTemporalTest() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/HNM/1AE50143-45C7-304F-8367-BCF3606CEF10";
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String datasource = "hnm";
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String collectionId = "hnmad";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADSArchivesBoundingBoxTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/90D1C95D-E249-3E74-92D9-B58FDF690CC7";
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String datasource = "ads";
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String collectionId = "archives";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansSpatialTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/F100A0AD-6A7F-3976-B77F-FFAB4F5B55DD";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansNativePeriodTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/CA076E46-5CED-322C-B77E-3B90C11B968B";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansTemporalPolygonTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/D4E12349-E214-3F3F-BEE4-D39D9138916B";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadSndRockartTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/SHFA/FED23426-2C68-3BB3-9BBA-24F2077C9C6A";
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String datasource = "snd";
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String collectionId = "rockart";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadNIAMTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/NIAM-BAS%2FAKB/D4388BF5-AF3D-3F24-8C2E-2FEAD1255FB1";
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String datasource = "niam";
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String collectionId = "amb";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADS398Test() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/ADS/AAA81A6D-56F3-341C-BAF0-791C31BC7F73";
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String datasource = "ads";
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String collectionId = "398";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadROADTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/F182086F-1460-3D1E-88A6-0168370D25A1";
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String datasource = "road";
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String collectionId = "sites";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADS328NativeFromUntilTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/7516E8FC-7C1E-38F7-8D62-8BF96B0D2559";
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String datasource = "ads";
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String collectionId = "328";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadFastiMultipleAriadneSubjectTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/FASTIONLINE/FE740BC7-2D9E-3644-A88E-3E8E5A5EA95F";
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String datasource = "fasti";
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String collectionId = "fieldwork";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadSNDArchivePolygonTest() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/A7A2588A-1FE7-3FDD-AD66-C84EACE1860E";
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String datasource = "snd";
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String collectionId = "zip";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDIMEDigitalImageTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/DIME/F9398BD5-DECB-3FF5-8077-D96893D0D0C6";
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String datasource = "aarhusdime";
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String collectionId = "test";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadFastiTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/FASTIONLINE/532D492C-B141-30D0-886A-1E69C2C20474";
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String datasource = "fasti";
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String collectionId = "fieldwork";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansClosedAccessTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/D1C1D6AD-320D-3616-B75D-F2E2C3DA7F3E";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansRestrictedAccessTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/221AAEC8-CC9B-310C-B800-0DFE34850E0B";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadDansOpenAccessTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/B251A0FE-EFE0-341B-A8B3-E0813CC82856";
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String datasource = "dans";
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String collectionId = "easy";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadConicetCollectionTest() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/IDACOR%20%28CONICET%2FUNC%29/8B238475-2BA7-3036-88C0-968E9A642E64";
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String datasource = "conicet";
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String collectionId = "CollectionInfo";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadConicetRecordTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/CONICET/0CD6BF2E-4AB7-39B6-937E-7DD59092DD3F";
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String datasource = "conicet";
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String collectionId = "fieldwork";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadNaraTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/07121539-04BD-3896-8E4B-22EEDDD400A8";
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String datasource = "nara";
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String collectionId = "fieldworkreport";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadINFNTest() throws Exception {
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boolean isRecord = false;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Collection/INFN/5AE70226-82A9-3B06-9E25-8FB71B64C51C";
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String datasource = "infn";
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String collectionId = "firenze";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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@Test
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// @Ignore
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public void uploadADSGreyLiteratureOver300TriplesTest() throws Exception {
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boolean isRecord = true;
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String recordId = "https://ariadne-infrastructure.eu/aocat/Resource/35AEC455-6CB5-31BB-B73E-30959FF3C4FE";
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String datasource = "ads";
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String collectionId = "1093";
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readAndIndexTest(isRecord, recordId, datasource, collectionId);
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}
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private void readAndIndexTest(boolean isRecord, String recordId, String datasource, String collectionId) throws Exception {
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final ClassPathResource resource = new ClassPathResource("application.properties");
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Properties appProps = new Properties();
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appProps.load(resource.getInputStream());
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runSPQRLQuery = new RunSPARQLQueryService();
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runSPQRLQuery.setupConnection(
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appProps.getProperty("graphdb.writer.user"),
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appProps.getProperty("graphdb.writer.pwd"),
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appProps.getProperty("graphdb.serverUrl"),
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appProps.getProperty("graphdb.repository"));
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ParseRDFJSON parseRDFJSON = new ParseRDFJSON();
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parseRDFJSON.setCatalogEntryJsonPath(appProps.getProperty("catalog.entry.path"));
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parseRDFJSON.setCatalogEntryCollectionJsonPath(appProps.getProperty("catalog.entry.collection.path"));
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runSPQRLQuery.setParser(parseRDFJSON);
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ResourceManager resourceManager = new ResourceManager();
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resourceManager.setup(
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appProps.getProperty("type.path"),
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appProps.getProperty("general.classpath"),
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appProps.getProperty("exclude.predicates"),
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appProps.getProperty("class.map.specifications")
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);
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runSPQRLQuery.setResourceManager(resourceManager);
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BulkUpload bulkUpload = new BulkUpload();
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bulkUpload.init(appProps.getProperty("elasticsearch.hostname"),appProps.getProperty("elasticsearch.indexname"));
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runSPQRLQuery.setBulkUpload(bulkUpload);
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final ClassPathResource queryTemplateResource;
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if (isRecord) {
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queryTemplateResource = new ClassPathResource("eu/dnetlib/ariadneplus/sparql/read_record_data_template.sparql");
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}
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else {
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queryTemplateResource = new ClassPathResource("eu/dnetlib/ariadneplus/sparql/read_collection_data_template.sparql");
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}
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List<String> recordIds = Arrays.asList(recordId);
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String queryTemplate = IOUtils.toString(queryTemplateResource.getInputStream(), StandardCharsets.UTF_8.name());
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String report = "";
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if (isRecord) {
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report = runSPQRLQuery.executeMultipleQueryGraph(queryTemplate, recordIds, datasource, collectionId, false);
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}
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else {
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report = runSPQRLQuery.executeMultipleQueryGraph(queryTemplate, recordIds, datasource, collectionId, true);
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}
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System.out.println(report);
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if (!report.contains("Total errors: 0")) {
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throw new Exception("Error found - check report value.");
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}
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}
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@Test
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@Ignore
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public void selectRecordsTest() throws Exception {
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final ClassPathResource resource = new ClassPathResource("application.properties");
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Properties appProps = new Properties();
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appProps.load(resource.getInputStream());
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String datasource = "ads";
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String collectionId = "271";
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runSPQRLQuery = new RunSPARQLQueryService();
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runSPQRLQuery.setupConnection(
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appProps.getProperty("graphdb.writer.user"),
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appProps.getProperty("graphdb.writer.pwd"),
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appProps.getProperty("repository.url"),
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appProps.getProperty("graphdb.repository"));
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runSPQRLQuery.selectRecordIds(datasource, collectionId);
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}
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@Test
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@Ignore
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public void loadQueryTest() throws Exception {
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final ClassPathResource resource = new ClassPathResource("eu/dnetlib/ariadneplus/sparql/read_record_data_template.sparql");
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String queryTemplate = IOUtils.toString(resource.getInputStream(), StandardCharsets.UTF_8.name());
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System.out.println(queryTemplate);
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}
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@Test
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@Ignore
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public void httpsRequestTest() throws Exception {
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// RemoteRepositoryManager manager = new RemoteRepositoryManager("http://graphdb-test.ariadne.d4science.org:7200");
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RemoteRepositoryManager manager = new RemoteRepositoryManager("https://graphdb-test.ariadne.d4science.org");
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manager.init();
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manager.setUsernameAndPassword("writer", "******");
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Repository repository = manager.getRepository("ariadneplus-ts01");
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RepositoryConnection connection = repository.getConnection();
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RepositoryResult<Resource> contexts = connection.getContextIDs();
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if (contexts!=null) {
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System.out.println("##### Primo context "+contexts.next().stringValue());
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}
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else {
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System.out.println("No contexts ");
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}
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connection.close();
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repository.shutDown();
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manager.shutDown();
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}
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}
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