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slow down the task producer to avoid OOM errors. See here for more: https://stackoverflow.com/questions/42108351/executorservice-giving-out-of-memory-error

This commit is contained in:
Alessia Bardi 2019-12-16 18:52:08 +01:00
parent c770fc40e0
commit 11e3992ab4
1 changed files with 42 additions and 11 deletions
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53
dnet-ariadneplus/src/main/java/eu/dnetlib/ariadneplus/workflows/nodes/PublishGraphDBJobNode.java
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@ -14,8 +14,11 @@ import org.apache.http.HttpResponse;
import org.apache.http.NameValuePair;
import org.apache.http.client.HttpClient;
import org.apache.http.client.entity.UrlEncodedFormEntity;
import org.apache.http.client.methods.CloseableHttpResponse;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.impl.client.CloseableHttpClient;
import org.apache.http.impl.client.HttpClients;
import org.apache.http.impl.conn.PoolingHttpClientConnectionManager;
import org.apache.http.message.BasicNameValuePair;
import org.springframework.beans.factory.annotation.Autowired;
@ -46,6 +49,7 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
//for parallel requests to the publisher endpoint
private int nThreads = 5;
private int nTasks = 150;
private ExecutorService executorService = Executors.newFixedThreadPool(nThreads);
private List<Future<Integer>> resList = Lists.newArrayList();
@ -57,19 +61,39 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
int countAll = 0;
int countOk = 0;
int partial = 0;
Map<Integer, Integer> errors = Maps.newHashMap();
log.info("Publish endpoint: " + getPublishEndpoint());
log.info("Publisher endpoint: " + getPublisherEndpoint());
PoolingHttpClientConnectionManager cm = new PoolingHttpClientConnectionManager();
cm.setMaxTotal(nThreads);
CloseableHttpClient client = HttpClients.custom().setConnectionManager(cm).build();
//need to slow down the producer to avoid OOM errors due to many tasks in the queue of the executor
//see for example here: https://stackoverflow.com/questions/42108351/executorservice-giving-out-of-memory-error
//let's stop and wait after submission of nLatch tasks
for (String record : getResultSetClient().iter(rsIn, String.class)) {
countAll++;
if(partial == nTasks) {
log.debug("Waiting for tasks to complete before resubmitting to executor (countAll = "+countAll+") . . . ");
log.debug("Getting replies");
long startWait = System.currentTimeMillis();
for(Future<Integer> res : resList){
if(res.get() == 200) countOk++;
}
resList.clear();
partial = 0;
log.debug(". . . Ready to submit again after "+(System.currentTimeMillis() - startWait)+" ms" );
}
partial++;
Future<Integer> res = executorService.submit( () -> {
CloseableHttpResponse responsePOST = null;
try {
HttpPost post = new HttpPost(getPublishEndpoint());
List<NameValuePair> params = Lists.newArrayList();
params.add(new BasicNameValuePair("record", record));
UrlEncodedFormEntity ent = new UrlEncodedFormEntity(params, "UTF-8");
post.setEntity(ent);
HttpClient client = HttpClients.createDefault();
HttpResponse responsePOST = client.execute(post);
responsePOST = client.execute(post);
int statusCode = responsePOST.getStatusLine().getStatusCode();
switch (statusCode) {
case 200:
@ -87,6 +111,9 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
e.printStackTrace();
errors.merge(-1, 1, Integer::sum);
}
finally{
if(responsePOST != null) responsePOST.close();
}
return -1;
});
resList.add(res);
@ -98,6 +125,7 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
for(Future<Integer> res : resList){
if(res.get() == 200) countOk++;
}
client.close();
log.info(String.format("Got all responses. Ok responses: %s/%s", countOk, countAll));
env.setAttribute(WorkflowsConstants.MAIN_LOG_PREFIX + "countOk", countOk);
@ -108,14 +136,14 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
if (!errors.isEmpty()) {
log.warn("Problems in publishing: "+countOk+"/"+countAll+" see error maps for details");
}
if(countAll == 0) log.warn("0 resources to publish");
env.setAttribute(WorkflowsConstants.MAIN_LOG_PREFIX + "countOk", countOk);
env.setAttribute(WorkflowsConstants.MAIN_LOG_PREFIX + "countAll", countAll);
env.setAttribute(WorkflowsConstants.MAIN_LOG_PREFIX + "errorsMap", new Gson().toJson(errors));
if(countAll == 0) {
log.warn("0 resources to publish");
cm.shutdown();
}
if (countOk > 0) {
log.info("Feed provenance endpoint: " + getProvenanceFeedEndpoint());
CloseableHttpResponse responsePOST = null;
try {
HttpPost post = new HttpPost(getProvenanceFeedEndpoint());
List<NameValuePair> params = Lists.newArrayList();
@ -124,8 +152,7 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
params.add(new BasicNameValuePair("datasourceApi", datasourceInterfaceValue));
UrlEncodedFormEntity ent = new UrlEncodedFormEntity(params, "UTF-8");
post.setEntity(ent);
HttpClient client = HttpClients.createDefault();
HttpResponse responsePOST = client.execute(post);
responsePOST = client.execute(post);
int statusCode = responsePOST.getStatusLine().getStatusCode();
switch (statusCode) {
case 200:
@ -141,8 +168,12 @@ public class PublishGraphDBJobNode extends AsyncJobNode {
catch (IOException e) {
log.error("error feeding provenance ", e);
}
finally{
if(responsePOST != null) responsePOST.close();
cm.shutdown();
}
}
return Arc.DEFAULT_ARC;
}